Strain Fitness in Escherichia fergusonii Becca around EFB2_00986

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,009,929	+				+0.1
1,009,929	+				-0.2
1,009,929	+				+0.8
1,009,929	+				+1.4
1,009,929	+				-0.7
1,009,929	+				-0.4
1,009,929	+				+0.2
1,009,929	+				+0.2
1,009,929	+				-0.2
1,009,929	+				+0.2
1,009,929	+				+2.3
1,009,929	+				+0.4
1,009,929	+				-2.1
1,009,929	+				+1.1
1,009,929	+				-1.5
1,009,929	+				-1.3
1,009,929	+				+0.4
1,009,929	+				+0.5
1,009,929	+				+0.5
1,009,929	+				+2.1
1,009,929	+				+0.7
1,009,929	+				-2.8
1,009,930	-				-2.5
1,009,930	-				+0.0
1,009,930	-				+0.5
1,009,930	-				+0.8
1,009,930	-				-1.1
1,009,930	-				-0.1
1,009,930	-				+0.2
1,009,930	-				-0.2
1,009,930	-				-0.4
1,009,930	-				-2.5
1,009,930	-				+0.9
1,009,930	-				-0.2
1,009,930	-				-0.1
1,009,930	-				+0.2
1,009,930	-				-0.4
1,009,930	-				+0.5
1,009,930	-				-0.6
1,009,930	-				+0.5
1,009,930	-				+0.7
1,009,930	-				-2.1
1,009,930	-				+0.1
1,009,930	-				-1.8
1,009,930	-				+0.4
1,009,930	-				+0.4
1,009,930	-				-0.4
1,009,930	-				-1.1
1,009,930	-				+1.3
1,009,930	-				-0.2
1,009,930	-				-0.8
1,009,937	+				-1.2
1,009,937	+				-3.8
1,009,937	+				+0.3
1,009,937	+				+1.3
1,009,938	-				+1.3
1,009,938	-				-0.0
1,009,938	-				+0.7
1,009,938	-				-1.0
1,009,938	-				+0.8
1,009,938	-				+0.7
1,009,964	+				-0.8
1,009,965	-				-3.9
1,009,965	-				-1.1
1,009,965	-				+1.3
1,010,023	-				-2.9
1,010,051	+				-1.2
1,010,051	+				-0.4
1,010,052	-				+0.8
1,010,070	+				-1.3
1,010,070	+				-0.7
1,010,071	-				-0.3
1,010,097	+				-0.1
1,010,152	+		EFB2_00985	0.16	-1.4
1,010,153	-		EFB2_00985	0.16	-1.8
1,010,154	+		EFB2_00985	0.16	+1.9
1,010,154	+		EFB2_00985	0.16	+1.7
1,010,154	+		EFB2_00985	0.16	+1.7
1,010,154	+		EFB2_00985	0.16	+1.4
1,010,154	+		EFB2_00985	0.16	-0.4
1,010,154	+		EFB2_00985	0.16	-1.0
1,010,154	+		EFB2_00985	0.16	-1.0
1,010,154	+		EFB2_00985	0.16	+0.8
1,010,154	+		EFB2_00985	0.16	-3.7
1,010,154	+		EFB2_00985	0.16	-1.7
1,010,154	+		EFB2_00985	0.16	+2.0
1,010,154	+		EFB2_00985	0.16	-0.8
1,010,154	+		EFB2_00985	0.16	+1.5
1,010,155	-		EFB2_00985	0.16	+0.2
1,010,155	-		EFB2_00985	0.16	+0.3
1,010,155	-		EFB2_00985	0.16	-3.8
1,010,155	-		EFB2_00985	0.16	-4.2
1,010,155	-		EFB2_00985	0.16	+0.1
1,010,155	-		EFB2_00985	0.16	+1.3
1,010,155	-		EFB2_00985	0.16	-0.6
1,010,155	-		EFB2_00985	0.16	+3.2
1,010,155	-		EFB2_00985	0.16	+0.2
1,010,155	-		EFB2_00985	0.16	-0.3
1,010,159	+		EFB2_00985	0.16	-0.0
1,010,159	+		EFB2_00985	0.16	-0.0
1,010,160	-		EFB2_00985	0.17	+0.3
1,010,163	+		EFB2_00985	0.17	-0.2
1,010,164	-		EFB2_00985	0.17	-1.9
1,010,164	-		EFB2_00985	0.17	-0.2
1,010,175	+		EFB2_00985	0.18	+0.3
1,010,175	+		EFB2_00985	0.18	+1.4
1,010,176	-		EFB2_00985	0.18	-0.6
1,010,176	-		EFB2_00985	0.18	-0.2
1,010,176	-		EFB2_00985	0.18	-0.1
1,010,178	+		EFB2_00985	0.19	-1.2
1,010,178	+		EFB2_00985	0.19	+0.1
1,010,178	+		EFB2_00985	0.19	-0.7
1,010,178	+		EFB2_00985	0.19	+0.9
1,010,178	+		EFB2_00985	0.19	+1.2
1,010,178	+		EFB2_00985	0.19	-1.1
1,010,178	+		EFB2_00985	0.19	-1.6
1,010,178	+		EFB2_00985	0.19	+1.3
1,010,179	-		EFB2_00985	0.19	+0.8
1,010,179	-		EFB2_00985	0.19	-2.6
1,010,179	-		EFB2_00985	0.19	-1.2
1,010,179	-		EFB2_00985	0.19	-0.5
1,010,181	+		EFB2_00985	0.19	-1.1
1,010,182	-		EFB2_00985	0.19	-0.1
1,010,182	-		EFB2_00985	0.19	+1.5
1,010,182	-		EFB2_00985	0.19	+0.6
1,010,182	-		EFB2_00985	0.19	+0.9
1,010,193	+		EFB2_00985	0.20	-0.9
1,010,212	+		EFB2_00985	0.22	-1.7
1,010,213	-		EFB2_00985	0.23	+0.5
1,010,233	+		EFB2_00985	0.25	+0.8
1,010,301	-		EFB2_00985	0.32	-0.3
1,010,301	-		EFB2_00985	0.32	-0.6
1,010,301	-		EFB2_00985	0.32	-0.1
1,010,301	-		EFB2_00985	0.32	+2.2
1,010,301	-		EFB2_00985	0.32	-0.1
1,010,306	+		EFB2_00985	0.33	-0.4
1,010,306	+		EFB2_00985	0.33	-0.7
1,010,306	+		EFB2_00985	0.33	-0.6
1,010,306	+		EFB2_00985	0.33	+0.5
1,010,306	+		EFB2_00985	0.33	-0.3
1,010,306	+		EFB2_00985	0.33	+0.1
1,010,306	+		EFB2_00985	0.33	+0.2
1,010,306	+		EFB2_00985	0.33	+0.6
1,010,306	+		EFB2_00985	0.33	-2.0
1,010,306	+		EFB2_00985	0.33	+0.6
1,010,306	+		EFB2_00985	0.33	+0.6
1,010,306	+		EFB2_00985	0.33	-1.1
1,010,306	+		EFB2_00985	0.33	-0.1
1,010,306	+		EFB2_00985	0.33	-0.4
1,010,306	+		EFB2_00985	0.33	+1.0
1,010,306	+		EFB2_00985	0.33	+0.8
1,010,306	+		EFB2_00985	0.33	-0.8
1,010,306	+		EFB2_00985	0.33	-2.0
1,010,306	+		EFB2_00985	0.33	-0.0
1,010,306	+		EFB2_00985	0.33	+0.1
1,010,306	+		EFB2_00985	0.33	+1.7
1,010,306	+		EFB2_00985	0.33	+0.5
1,010,307	-		EFB2_00985	0.33	-0.9
1,010,307	-		EFB2_00985	0.33	+0.7
1,010,307	-		EFB2_00985	0.33	+0.5
1,010,307	-		EFB2_00985	0.33	-2.3
1,010,307	-		EFB2_00985	0.33	+1.4
1,010,307	-		EFB2_00985	0.33	+0.7
1,010,307	-		EFB2_00985	0.33	-0.3
1,010,307	-		EFB2_00985	0.33	-0.2
1,010,307	-		EFB2_00985	0.33	-0.9
1,010,307	-		EFB2_00985	0.33	-3.1
1,010,307	-		EFB2_00985	0.33	+0.3
1,010,307	-		EFB2_00985	0.33	+0.8
1,010,307	-		EFB2_00985	0.33	-0.9
1,010,307	-		EFB2_00985	0.33	+0.1
1,010,307	-		EFB2_00985	0.33	-1.6
1,010,307	-		EFB2_00985	0.33	+1.2
1,010,307	-		EFB2_00985	0.33	+0.0
1,010,307	-		EFB2_00985	0.33	+1.1
1,010,307	-		EFB2_00985	0.33	+0.2
1,010,307	-		EFB2_00985	0.33	+0.0
1,010,307	-		EFB2_00985	0.33	-0.7
1,010,307	-		EFB2_00985	0.33	+0.5
1,010,307	-		EFB2_00985	0.33	-0.2
1,010,307	-		EFB2_00985	0.33	+0.5
1,010,307	-		EFB2_00985	0.33	+0.6
1,010,307	-		EFB2_00985	0.33	+0.2
1,010,307	-		EFB2_00985	0.33	-0.6
1,010,307	-		EFB2_00985	0.33	+0.7
1,010,307	-		EFB2_00985	0.33	+0.5
1,010,307	-		EFB2_00985	0.33	-0.2
1,010,307	-		EFB2_00985	0.33	-2.3
1,010,307	-		EFB2_00985	0.33	+0.3
1,010,307	-		EFB2_00985	0.33	-0.4
1,010,310	+		EFB2_00985	0.33	-1.5
1,010,310	+		EFB2_00985	0.33	-0.8
1,010,310	+		EFB2_00985	0.33	+0.6
1,010,310	+		EFB2_00985	0.33	-1.8
1,010,310	+		EFB2_00985	0.33	+1.3
1,010,310	+		EFB2_00985	0.33	-0.4
1,010,310	+		EFB2_00985	0.33	+0.6
1,010,310	+		EFB2_00985	0.33	-0.5
1,010,310	+		EFB2_00985	0.33	+0.7
1,010,310	+		EFB2_00985	0.33	+0.6
1,010,310	+		EFB2_00985	0.33	+0.8
1,010,310	+		EFB2_00985	0.33	-0.6
1,010,310	+		EFB2_00985	0.33	+1.1
1,010,310	+		EFB2_00985	0.33	+0.2
1,010,310	+		EFB2_00985	0.33	+3.1
1,010,310	+		EFB2_00985	0.33	+1.8
1,010,310	+		EFB2_00985	0.33	-0.5
1,010,310	+		EFB2_00985	0.33	+0.2
1,010,310	+		EFB2_00985	0.33	-0.7
1,010,310	+		EFB2_00985	0.33	-1.3
1,010,310	+		EFB2_00985	0.33	-2.8
1,010,311	-		EFB2_00985	0.33	-2.8
1,010,311	-		EFB2_00985	0.33	+0.8
1,010,311	-		EFB2_00985	0.33	-1.6
1,010,311	-		EFB2_00985	0.33	+1.1
1,010,311	-		EFB2_00985	0.33	-1.3
1,010,311	-		EFB2_00985	0.33	+0.9
1,010,311	-		EFB2_00985	0.33	-2.6
1,010,311	-		EFB2_00985	0.33	+1.7
1,010,311	-		EFB2_00985	0.33	-1.1
1,010,311	-		EFB2_00985	0.33	+0.1
1,010,311	-		EFB2_00985	0.33	-0.6
1,010,311	-		EFB2_00985	0.33	-0.7
1,010,311	-		EFB2_00985	0.33	-3.3
1,010,311	-		EFB2_00985	0.33	+0.2
1,010,311	-		EFB2_00985	0.33	+0.4
1,010,311	-		EFB2_00985	0.33	+1.3
1,010,313	+		EFB2_00985	0.34	-1.4
1,010,313	+		EFB2_00985	0.34	-1.6
1,010,313	+		EFB2_00985	0.34	+0.8
1,010,313	+		EFB2_00985	0.34	+1.3
1,010,313	+		EFB2_00985	0.34	-0.2
1,010,313	+		EFB2_00985	0.34	-2.1
1,010,313	+		EFB2_00985	0.34	+0.4
1,010,313	+		EFB2_00985	0.34	-0.2
1,010,313	+		EFB2_00985	0.34	-0.1
1,010,313	+		EFB2_00985	0.34	-2.4
1,010,313	+		EFB2_00985	0.34	-0.4
1,010,313	+		EFB2_00985	0.34	-2.3
1,010,313	+		EFB2_00985	0.34	-1.0
1,010,313	+		EFB2_00985	0.34	+0.5
1,010,313	+		EFB2_00985	0.34	+0.4
1,010,313	+		EFB2_00985	0.34	+2.6
1,010,313	+		EFB2_00985	0.34	-1.0
1,010,313	+		EFB2_00985	0.34	+0.1
1,010,313	+		EFB2_00985	0.34	+1.5
1,010,313	+		EFB2_00985	0.34	+1.0
1,010,314	-		EFB2_00985	0.34	-0.6
1,010,314	-		EFB2_00985	0.34	-2.2
1,010,314	-		EFB2_00985	0.34	+0.3
1,010,314	-		EFB2_00985	0.34	-0.5
1,010,314	-		EFB2_00985	0.34	+0.8
1,010,314	-		EFB2_00985	0.34	-1.5
1,010,314	-		EFB2_00985	0.34	-2.5
1,010,314	-		EFB2_00985	0.34	-1.3
1,010,314	-		EFB2_00985	0.34	+1.3
1,010,314	-		EFB2_00985	0.34	-0.8
1,010,314	-		EFB2_00985	0.34	+1.8
1,010,314	-		EFB2_00985	0.34	+0.6
1,010,314	-		EFB2_00985	0.34	-0.1
1,010,314	-		EFB2_00985	0.34	+0.5
1,010,318	-		EFB2_00985	0.34	+1.5
1,010,318	-		EFB2_00985	0.34	+0.8
1,010,318	-		EFB2_00985	0.34	-1.7
1,010,328	+		EFB2_00985	0.35	-0.2
1,010,329	-		EFB2_00985	0.35	-0.3
1,010,346	+		EFB2_00985	0.37	-0.6
1,010,347	-		EFB2_00985	0.37	-1.4
1,010,359	-		EFB2_00985	0.39	+0.7
1,010,359	-		EFB2_00985	0.39	-0.5
1,010,435	+		EFB2_00985	0.47	+0.0
1,010,436	-		EFB2_00985	0.47	-0.5
1,010,436	-		EFB2_00985	0.47	+0.5
1,010,442	+		EFB2_00985	0.48	+0.5
1,010,442	+		EFB2_00985	0.48	-0.8
1,010,442	+		EFB2_00985	0.48	+0.6
1,010,442	+		EFB2_00985	0.48	+0.8
1,010,443	-		EFB2_00985	0.48	-1.4
1,010,443	-		EFB2_00985	0.48	-0.1
1,010,443	-		EFB2_00985	0.48	-1.2
1,010,443	-		EFB2_00985	0.48	+0.5
1,010,443	-		EFB2_00985	0.48	+0.3
1,010,444	+		EFB2_00985	0.48	-1.4
1,010,445	-		EFB2_00985	0.48	+1.1
1,010,462	+		EFB2_00985	0.50	-1.2
1,010,462	+		EFB2_00985	0.50	+0.1
1,010,462	+		EFB2_00985	0.50	-0.1
1,010,462	+		EFB2_00985	0.50	+0.3
1,010,462	+		EFB2_00985	0.50	+0.9
1,010,462	+		EFB2_00985	0.50	-1.4
1,010,462	+		EFB2_00985	0.50	+1.7
1,010,462	+		EFB2_00985	0.50	-0.3
1,010,462	+		EFB2_00985	0.50	+1.1
1,010,462	+		EFB2_00985	0.50	-1.5
1,010,462	+		EFB2_00985	0.50	-1.5
1,010,462	+		EFB2_00985	0.50	+0.5
1,010,462	+		EFB2_00985	0.50	+0.0
1,010,462	+		EFB2_00985	0.50	-0.6
1,010,462	+		EFB2_00985	0.50	-0.5
1,010,462	+		EFB2_00985	0.50	-0.2
1,010,463	-		EFB2_00985	0.50	-1.1
1,010,463	-		EFB2_00985	0.50	+0.2
1,010,463	-		EFB2_00985	0.50	+0.7
1,010,463	-		EFB2_00985	0.50	-0.3
1,010,463	-		EFB2_00985	0.50	-0.6
1,010,463	-		EFB2_00985	0.50	-0.9
1,010,463	-		EFB2_00985	0.50	-1.3
1,010,463	-		EFB2_00985	0.50	+0.9
1,010,463	-		EFB2_00985	0.50	-0.6
1,010,463	-		EFB2_00985	0.50	+0.6
1,010,463	-		EFB2_00985	0.50	+0.2
1,010,463	-		EFB2_00985	0.50	+1.1
1,010,463	-		EFB2_00985	0.50	-0.8
1,010,463	-		EFB2_00985	0.50	-2.5
1,010,463	-		EFB2_00985	0.50	-3.5
1,010,463	-		EFB2_00985	0.50	-2.9
1,010,463	-		EFB2_00985	0.50	-1.5
1,010,463	-		EFB2_00985	0.50	-0.5
1,010,463	-		EFB2_00985	0.50	-1.3
1,010,496	+		EFB2_00985	0.54	+1.9
1,010,497	-		EFB2_00985	0.54	-1.6
1,010,497	-		EFB2_00985	0.54	-1.5
1,010,507	+		EFB2_00985	0.55	+0.8
1,010,507	+		EFB2_00985	0.55	-1.2
1,010,507	+		EFB2_00985	0.55	-0.3
1,010,507	+		EFB2_00985	0.55	-1.9
1,010,507	+		EFB2_00985	0.55	+0.1
1,010,507	+		EFB2_00985	0.55	-3.1
1,010,508	-		EFB2_00985	0.55	+6.4
1,010,508	-		EFB2_00985	0.55	+0.2
1,010,508	-		EFB2_00985	0.55	-1.4
1,010,508	-		EFB2_00985	0.55	-1.5
1,010,508	-		EFB2_00985	0.55	+0.2
1,010,508	-		EFB2_00985	0.55	+1.6
1,010,508	-		EFB2_00985	0.55	-1.5
1,010,508	-		EFB2_00985	0.55	+0.5
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