Strain Fitness in Escherichia fergusonii Becca around EFB2_00842

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
863,808	+		EFB2_00841	0.82	+0.0
863,808	+		EFB2_00841	0.82	+0.3
863,808	+		EFB2_00841	0.82	-0.8
863,808	+		EFB2_00841	0.82	+0.2
863,808	+		EFB2_00841	0.82	-0.1
863,808	+		EFB2_00841	0.82	-0.7
863,809	-		EFB2_00841	0.82	-0.2
863,809	-		EFB2_00841	0.82	+0.4
863,809	-		EFB2_00841	0.82	-1.3
863,809	-		EFB2_00841	0.82	-1.9
863,809	-		EFB2_00841	0.82	+0.5
863,812	+		EFB2_00841	0.82	-2.0
863,812	+		EFB2_00841	0.82	-0.0
863,812	+		EFB2_00841	0.82	+0.4
863,812	+		EFB2_00841	0.82	+1.9
863,812	+		EFB2_00841	0.82	+1.4
863,812	+		EFB2_00841	0.82	-0.1
863,812	+		EFB2_00841	0.82	+3.4
863,812	+		EFB2_00841	0.82	+2.0
863,812	+		EFB2_00841	0.82	+0.4
863,812	+		EFB2_00841	0.82	+0.8
863,812	+		EFB2_00841	0.82	+0.1
863,812	+		EFB2_00841	0.82	+0.6
863,812	+		EFB2_00841	0.82	-0.8
863,812	+		EFB2_00841	0.82	-0.0
863,812	+		EFB2_00841	0.82	-0.3
863,812	+		EFB2_00841	0.82	-0.5
863,812	+		EFB2_00841	0.82	-1.0
863,812	+		EFB2_00841	0.82	+0.3
863,812	+		EFB2_00841	0.82	-2.8
863,812	+		EFB2_00841	0.82	-0.0
863,813	-		EFB2_00841	0.82	+0.9
863,813	-		EFB2_00841	0.82	-0.8
863,813	-		EFB2_00841	0.82	+0.2
863,813	-		EFB2_00841	0.82	-2.6
863,813	-		EFB2_00841	0.82	+0.3
863,813	-		EFB2_00841	0.82	+0.7
863,813	-		EFB2_00841	0.82	-1.0
863,813	-		EFB2_00841	0.82	-1.8
863,813	-		EFB2_00841	0.82	+1.6
863,813	-		EFB2_00841	0.82	-0.5
863,813	-		EFB2_00841	0.82	-0.3
863,813	-		EFB2_00841	0.82	+0.8
863,813	-		EFB2_00841	0.82	-0.3
863,813	-		EFB2_00841	0.82	+1.0
863,832	+		EFB2_00841	0.83	+1.0
863,832	+		EFB2_00841	0.83	+0.8
863,832	+		EFB2_00841	0.83	+0.4
863,832	+		EFB2_00841	0.83	-0.7
863,833	-		EFB2_00841	0.83	-2.6
863,833	-		EFB2_00841	0.83	+0.3
863,979	+		EFB2_00841	0.86	+0.8
863,979	+		EFB2_00841	0.86	-1.2
864,006	-		EFB2_00841	0.87	+1.2
864,046	+		EFB2_00841	0.87	-0.0
864,046	+		EFB2_00841	0.87	+0.8
864,046	+		EFB2_00841	0.87	+0.5
864,046	+		EFB2_00841	0.87	-0.8
864,046	+		EFB2_00841	0.87	-1.1
864,046	+		EFB2_00841	0.87	-0.5
864,046	+		EFB2_00841	0.87	-2.3
864,046	+		EFB2_00841	0.87	+0.1
864,046	+		EFB2_00841	0.87	+0.4
864,046	+		EFB2_00841	0.87	-0.1
864,046	+		EFB2_00841	0.87	+0.8
864,046	+		EFB2_00841	0.87	+0.2
864,046	+		EFB2_00841	0.87	+3.3
864,046	+		EFB2_00841	0.87	-1.4
864,047	-		EFB2_00841	0.87	-2.0
864,047	-		EFB2_00841	0.87	-0.0
864,047	-		EFB2_00841	0.87	+0.5
864,047	-		EFB2_00841	0.87	+0.6
864,047	-		EFB2_00841	0.87	+0.3
864,047	-		EFB2_00841	0.87	+0.5
864,047	-		EFB2_00841	0.87	+1.0
864,047	-		EFB2_00841	0.87	-0.5
864,061	+		EFB2_00841	0.88	-2.1
864,062	-		EFB2_00841	0.88	+0.5
864,062	-		EFB2_00841	0.88	-0.4
864,096	+		EFB2_00841	0.89	+1.7
864,096	+		EFB2_00841	0.89	-0.1
864,097	-		EFB2_00841	0.89	-1.1
864,113	-		EFB2_00841	0.89	+0.0
864,113	-		EFB2_00841	0.89	-0.4
864,175	+				+1.5
864,175	+				-0.0
864,175	+				-0.0
864,175	+				-0.9
864,175	+				-1.7
864,175	+				+1.8
864,175	+				-1.4
864,175	+				+0.3
864,175	+				-1.7
864,175	+				+1.2
864,175	+				-1.1
864,175	+				-0.7
864,175	+				-0.0
864,176	-				+1.4
864,176	-				-1.6
864,176	-				+0.5
864,176	-				+0.1
864,176	-				+0.1
864,176	-				-0.4
864,176	-				+0.9
864,176	-				-1.9
864,176	-				-0.6
864,176	-				-0.4
864,176	-				-0.5
864,176	-				-1.7
864,176	-				-0.1
864,176	-				+0.7
864,176	-				+0.0
864,176	-				+1.4
864,176	-				+0.2
864,176	-				-1.1
864,176	-				+0.1
864,176	-				+0.7
864,213	+				-0.6
864,253	+				-0.8
864,253	+				+0.7
864,254	-				-0.6
864,254	-				-1.0
864,254	-				+0.2
864,254	-				+0.6
864,306	+				-2.1
864,306	+				-0.6
864,307	-				+1.6
864,330	+				-0.8
864,330	+				-1.6
864,331	-				+0.4
864,355	+				-0.3
864,355	+				+1.1
864,355	+				-0.1
864,355	+				+0.4
864,355	+				+0.4
864,356	-				-1.0
864,356	-				-0.1
864,470	-				-0.6
864,470	-				+0.3
864,476	+				-0.6
864,526	+				+0.5
864,526	+				-1.2
864,527	-				+0.0
864,527	-				-0.2
864,527	-				-1.1
864,527	-				-0.8
864,582	+				+0.1
864,583	-				-1.5
864,583	-				-0.6
864,600	+				+1.1
864,600	+				+0.1
864,600	+				+0.3
864,600	+				+0.5
864,600	+				-0.1
864,600	+				+0.7
864,600	+				+0.8
864,600	+				-1.1
864,600	+				+0.5
864,600	+				-1.1
864,601	-				-1.2
864,601	-				-1.6
864,601	-				-1.6
864,601	-				+3.4
864,601	-				-0.1
864,601	-				-1.2
864,601	-				+0.4
864,601	-				+2.1
864,601	-				+0.9
864,601	-				-3.5
864,601	-				-0.2
864,601	-				+0.4
864,616	+				-0.8
864,616	+				-0.0
864,616	+				-1.5
864,617	-				-0.6
864,617	-				-0.4
864,625	-				-0.7
864,625	-				-1.3
864,663	+				-1.4
864,663	+				+2.0
864,663	+				-3.5
864,663	+				+0.2
864,663	+				+0.5
864,663	+				+0.8
864,678	+				-1.4
864,705	-				-0.6
864,727	-				+0.9
864,727	-				-0.6
864,727	-				-0.3
864,733	+				+2.4
864,733	+				+0.5
864,733	+				+0.3
864,733	+				+0.2
864,733	+				-0.2
864,733	+				+1.6
864,733	+				-0.8
864,733	+				+1.3
864,733	+				+1.4
864,733	+				-1.5
864,734	-				+0.7
864,734	-				-1.4
864,734	-				-1.6
864,734	-				+0.7
864,734	-				-0.9
864,734	-				-0.9
864,734	-				+1.6
864,734	-				-0.0
864,734	-				-0.1
864,734	-				+0.6
864,734	-				-1.4
864,734	-				-2.6
864,734	-				+1.6
864,762	-				-0.4
864,762	-				-0.1
864,762	-				-1.3
864,762	-				+0.5
864,770	+				+0.5
864,770	+				+1.5
864,770	+				+0.1
864,770	+				-0.8
864,771	-				-1.5
864,771	-				+0.2
864,771	-				+1.9
864,771	-				-1.5
864,771	-				-1.4
864,807	-				-2.2
864,937	+		EFB2_00842	0.19	+0.5
864,937	+		EFB2_00842	0.19	+0.5
864,937	+		EFB2_00842	0.19	+0.5
864,937	+		EFB2_00842	0.19	+0.3
864,937	+		EFB2_00842	0.19	-2.4
864,938	-		EFB2_00842	0.19	+0.9
864,938	-		EFB2_00842	0.19	-1.7
864,951	+		EFB2_00842	0.21	+0.5
864,952	-		EFB2_00842	0.21	+0.2
864,997	+		EFB2_00842	0.27	-0.6
864,998	-		EFB2_00842	0.27	+1.5
864,998	-		EFB2_00842	0.27	+1.2
865,015	+		EFB2_00842	0.29	-0.4
865,015	+		EFB2_00842	0.29	-0.1
865,015	+		EFB2_00842	0.29	-1.8
865,015	+		EFB2_00842	0.29	-0.1
865,016	-		EFB2_00842	0.29	-1.7
865,016	-		EFB2_00842	0.29	+0.6
865,016	-		EFB2_00842	0.29	-4.0
865,101	+		EFB2_00842	0.39	+0.8
865,173	+		EFB2_00842	0.48	+0.7
865,173	+		EFB2_00842	0.48	+0.4
865,173	+		EFB2_00842	0.48	+0.4
865,173	+		EFB2_00842	0.48	-1.4
865,173	+		EFB2_00842	0.48	-1.4
865,173	+		EFB2_00842	0.48	+0.8
865,173	+		EFB2_00842	0.48	-1.9
865,173	+		EFB2_00842	0.48	+1.2
865,174	-		EFB2_00842	0.48	-0.3
865,174	-		EFB2_00842	0.48	+1.1
865,174	-		EFB2_00842	0.48	-1.2
865,174	-		EFB2_00842	0.48	+0.6
865,174	-		EFB2_00842	0.48	-0.1
865,174	-		EFB2_00842	0.48	+0.9
865,174	-		EFB2_00842	0.48	+0.1
865,240	+		EFB2_00842	0.57	-0.2
865,251	+		EFB2_00842	0.58	-0.6
865,251	+		EFB2_00842	0.58	-0.8
865,252	-		EFB2_00842	0.58	-0.4
865,252	-		EFB2_00842	0.58	-0.8
865,302	+		EFB2_00842	0.64	+1.8
865,302	+		EFB2_00842	0.64	+2.4
865,302	+		EFB2_00842	0.64	+0.6
865,302	+		EFB2_00842	0.64	-1.3
865,303	-		EFB2_00842	0.64	+1.3
865,303	-		EFB2_00842	0.64	-0.9
865,303	-		EFB2_00842	0.64	+1.7
865,303	-		EFB2_00842	0.64	+0.0
865,303	-		EFB2_00842	0.64	+0.8
865,336	+		EFB2_00842	0.68	+0.1
865,336	+		EFB2_00842	0.68	-2.0
865,337	-		EFB2_00842	0.69	-2.9
865,339	+		EFB2_00842	0.69	-0.6
865,339	+		EFB2_00842	0.69	-0.4
865,339	+		EFB2_00842	0.69	-1.1
865,340	-		EFB2_00842	0.69	+0.3
865,340	-		EFB2_00842	0.69	+0.8
865,340	-		EFB2_00842	0.69	+0.0
865,340	-		EFB2_00842	0.69	+0.9
865,340	-		EFB2_00842	0.69	+0.7
865,340	-		EFB2_00842	0.69	+0.5
865,340	-		EFB2_00842	0.69	-0.6
865,346	+		EFB2_00842	0.70	+1.3
865,347	-		EFB2_00842	0.70	-2.6
865,362	+		EFB2_00842	0.72	+2.2
865,371	+		EFB2_00842	0.73	+2.4
865,371	+		EFB2_00842	0.73	-1.4
865,372	-		EFB2_00842	0.73	-1.6
865,372	-		EFB2_00842	0.73	+0.6
865,372	-		EFB2_00842	0.73	+0.1
865,381	+		EFB2_00842	0.74	-0.6
865,381	+		EFB2_00842	0.74	-0.7
865,382	-		EFB2_00842	0.74	+0.8
865,392	+		EFB2_00842	0.75	-0.4
865,392	+		EFB2_00842	0.75	-0.8
865,392	+		EFB2_00842	0.75	-0.2
865,393	-		EFB2_00842	0.75	-2.6
865,393	-		EFB2_00842	0.75	+0.6
865,393	-		EFB2_00842	0.75	+1.3
865,407	+		EFB2_00842	0.77	-0.2
865,407	+		EFB2_00842	0.77	-0.3
865,407	+		EFB2_00842	0.77	+0.9
865,407	+		EFB2_00842	0.77	-0.6
865,407	+		EFB2_00842	0.77	-0.5
865,407	+		EFB2_00842	0.77	+0.3
865,407	+		EFB2_00842	0.77	-0.0
865,407	+		EFB2_00842	0.77	-0.1
865,407	+		EFB2_00842	0.77	+1.0
865,407	+		EFB2_00842	0.77	+1.8
865,407	+		EFB2_00842	0.77	-2.4
865,407	+		EFB2_00842	0.77	-0.0
865,407	+		EFB2_00842	0.77	+2.1
865,407	+		EFB2_00842	0.77	-0.7
865,407	+		EFB2_00842	0.77	+0.8
865,407	+		EFB2_00842	0.77	-1.0
865,407	+		EFB2_00842	0.77	-2.6
865,408	-		EFB2_00842	0.77	-0.9
865,408	-		EFB2_00842	0.77	+3.1
865,408	-		EFB2_00842	0.77	+1.6
865,408	-		EFB2_00842	0.77	-3.1
865,408	-		EFB2_00842	0.77	+0.7
865,408	-		EFB2_00842	0.77	-2.9
865,408	-		EFB2_00842	0.77	+1.8
865,408	-		EFB2_00842	0.77	+0.3
865,408	-		EFB2_00842	0.77	+6.0
865,408	-		EFB2_00842	0.77	+0.2
865,408	-		EFB2_00842	0.77	+0.4
865,408	-		EFB2_00842	0.77	-0.6
865,408	-		EFB2_00842	0.77	+0.3
865,408	-		EFB2_00842	0.77	+0.8
865,408	-		EFB2_00842	0.77	+1.0
865,410	+		EFB2_00842	0.78	+0.9
865,410	+		EFB2_00842	0.78	-0.4
865,410	+		EFB2_00842	0.78	+0.4
865,410	+		EFB2_00842	0.78	-0.3
865,411	-		EFB2_00842	0.78	-1.1
865,411	-		EFB2_00842	0.78	-1.8
865,411	-		EFB2_00842	0.78	+0.4
865,411	-		EFB2_00842	0.78	-1.2
865,411	-		EFB2_00842	0.78	-0.9
865,411	-		EFB2_00842	0.78	+1.1
865,411	-		EFB2_00842	0.78	+0.7
865,425	+		EFB2_00842	0.79	+0.5
865,425	+		EFB2_00842	0.79	+0.4
865,425	+		EFB2_00842	0.79	+1.1
865,426	-		EFB2_00842	0.80	+0.2
865,426	-		EFB2_00842	0.80	+1.5
865,491	+		EFB2_00842	0.88	-0.1
865,491	+		EFB2_00842	0.88	-0.4
865,491	+		EFB2_00842	0.88	+0.7
865,491	+		EFB2_00842	0.88	-0.7
865,491	+		EFB2_00842	0.88	-0.8
865,491	+		EFB2_00842	0.88	-0.8
865,491	+		EFB2_00842	0.88	+0.2
865,491	+		EFB2_00842	0.88	-2.4
865,492	-		EFB2_00842	0.88	+0.4
865,492	-		EFB2_00842	0.88	-2.9
865,492	-		EFB2_00842	0.88	+1.0
865,492	-		EFB2_00842	0.88	+1.7
865,492	-		EFB2_00842	0.88	-0.5
865,492	-		EFB2_00842	0.88	+0.3
865,492	-		EFB2_00842	0.88	-0.6
865,492	-		EFB2_00842	0.88	-0.4
865,492	-		EFB2_00842	0.88	-0.8
865,493	+		EFB2_00842	0.88	-1.5
865,493	+		EFB2_00842	0.88	-0.7
865,493	+		EFB2_00842	0.88	+0.0
865,493	+		EFB2_00842	0.88	-1.8
865,493	+		EFB2_00842	0.88	+0.5
865,494	-		EFB2_00842	0.88	-0.9
865,494	-		EFB2_00842	0.88	-0.8
865,494	-		EFB2_00842	0.88	+0.1
865,494	-		EFB2_00842	0.88	-0.0
865,494	-		EFB2_00842	0.88	-4.1
865,494	-		EFB2_00842	0.88	+0.2
865,494	-		EFB2_00842	0.88	-0.9
865,494	-		EFB2_00842	0.88	-0.6
865,494	-		EFB2_00842	0.88	-2.6
865,494	-		EFB2_00842	0.88	-1.6
865,494	-		EFB2_00842	0.88	+0.6
865,505	-		EFB2_00842	0.89	-0.2
865,560	+				-0.8
865,561	-				-1.1
865,561	-				-2.6
865,561	-				+1.8
865,571	+				+0.0
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