Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04965

Experiment: D-Glucose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04964 and BACOVA_04965 are separated by 21 nucleotidesBACOVA_04965 and BACOVA_04966 are separated by 80 nucleotides BACOVA_04964: BACOVA_04964 - TonB-linked outer membrane protein, SusC/RagA family, at 403,919 to 406,969 _04964 BACOVA_04965: BACOVA_04965 - SusD family protein, at 406,991 to 408,712 _04965 BACOVA_04966: BACOVA_04966 - FG-GAP repeat protein, at 408,793 to 410,877 _04966 Position (kb) 406 407 408 409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 406.067 kb on + strand, within BACOVA_04964at 406.068 kb on - strand, within BACOVA_04964at 406.087 kb on + strand, within BACOVA_04964at 406.088 kb on - strand, within BACOVA_04964at 406.170 kb on - strand, within BACOVA_04964at 406.190 kb on - strand, within BACOVA_04964at 406.216 kb on - strand, within BACOVA_04964at 406.249 kb on + strand, within BACOVA_04964at 406.250 kb on - strand, within BACOVA_04964at 406.250 kb on - strand, within BACOVA_04964at 406.291 kb on + strand, within BACOVA_04964at 406.292 kb on - strand, within BACOVA_04964at 406.329 kb on + strand, within BACOVA_04964at 406.329 kb on + strand, within BACOVA_04964at 406.330 kb on - strand, within BACOVA_04964at 406.330 kb on - strand, within BACOVA_04964at 406.330 kb on - strand, within BACOVA_04964at 406.332 kb on - strand, within BACOVA_04964at 406.342 kb on - strand, within BACOVA_04964at 406.373 kb on - strand, within BACOVA_04964at 406.402 kb on + strand, within BACOVA_04964at 406.486 kb on + strand, within BACOVA_04964at 406.486 kb on + strand, within BACOVA_04964at 406.486 kb on + strand, within BACOVA_04964at 406.551 kb on + strand, within BACOVA_04964at 406.552 kb on - strand, within BACOVA_04964at 406.557 kb on + strand, within BACOVA_04964at 406.557 kb on + strand, within BACOVA_04964at 406.558 kb on - strand, within BACOVA_04964at 406.558 kb on - strand, within BACOVA_04964at 406.607 kb on - strand, within BACOVA_04964at 406.624 kb on - strand, within BACOVA_04964at 406.624 kb on - strand, within BACOVA_04964at 406.628 kb on - strand, within BACOVA_04964at 406.652 kb on + strand, within BACOVA_04964at 406.652 kb on + strand, within BACOVA_04964at 406.692 kb on - strandat 406.715 kb on - strandat 406.724 kb on - strandat 406.790 kb on + strandat 406.790 kb on + strandat 406.791 kb on - strandat 406.791 kb on - strandat 406.848 kb on + strandat 406.851 kb on - strandat 406.851 kb on - strandat 406.851 kb on - strandat 406.910 kb on + strandat 406.941 kb on + strandat 406.942 kb on - strandat 406.944 kb on + strandat 407.008 kb on + strandat 407.012 kb on + strandat 407.072 kb on + strandat 407.073 kb on - strandat 407.078 kb on - strandat 407.078 kb on - strandat 407.081 kb on + strandat 407.118 kb on + strandat 407.119 kb on - strandat 407.137 kb on + strandat 407.141 kb on + strandat 407.142 kb on - strandat 407.172 kb on - strand, within BACOVA_04965at 407.172 kb on - strand, within BACOVA_04965at 407.172 kb on - strand, within BACOVA_04965at 407.174 kb on - strand, within BACOVA_04965at 407.214 kb on - strand, within BACOVA_04965at 407.214 kb on - strand, within BACOVA_04965at 407.219 kb on + strand, within BACOVA_04965at 407.220 kb on - strand, within BACOVA_04965at 407.276 kb on - strand, within BACOVA_04965at 407.300 kb on + strand, within BACOVA_04965at 407.311 kb on - strand, within BACOVA_04965at 407.326 kb on - strand, within BACOVA_04965at 407.327 kb on + strand, within BACOVA_04965at 407.382 kb on - strand, within BACOVA_04965at 407.405 kb on - strand, within BACOVA_04965at 407.417 kb on + strand, within BACOVA_04965at 407.424 kb on + strand, within BACOVA_04965at 407.424 kb on + strand, within BACOVA_04965at 407.441 kb on + strand, within BACOVA_04965at 407.441 kb on + strand, within BACOVA_04965at 407.442 kb on - strand, within BACOVA_04965at 407.448 kb on - strand, within BACOVA_04965at 407.452 kb on + strand, within BACOVA_04965at 407.453 kb on - strand, within BACOVA_04965at 407.468 kb on + strand, within BACOVA_04965at 407.494 kb on + strand, within BACOVA_04965at 407.496 kb on + strand, within BACOVA_04965at 407.497 kb on - strand, within BACOVA_04965at 407.497 kb on - strand, within BACOVA_04965at 407.500 kb on - strand, within BACOVA_04965at 407.518 kb on + strand, within BACOVA_04965at 407.519 kb on - strand, within BACOVA_04965at 407.556 kb on - strand, within BACOVA_04965at 407.557 kb on + strand, within BACOVA_04965at 407.582 kb on - strand, within BACOVA_04965at 407.582 kb on - strand, within BACOVA_04965at 407.588 kb on - strand, within BACOVA_04965at 407.620 kb on + strand, within BACOVA_04965at 407.621 kb on - strand, within BACOVA_04965at 407.633 kb on - strand, within BACOVA_04965at 407.636 kb on - strand, within BACOVA_04965at 407.702 kb on + strand, within BACOVA_04965at 407.718 kb on + strand, within BACOVA_04965at 407.735 kb on - strand, within BACOVA_04965at 407.738 kb on - strand, within BACOVA_04965at 407.761 kb on + strand, within BACOVA_04965at 407.771 kb on - strand, within BACOVA_04965at 407.831 kb on + strand, within BACOVA_04965at 407.858 kb on + strand, within BACOVA_04965at 407.903 kb on - strand, within BACOVA_04965at 407.905 kb on + strand, within BACOVA_04965at 407.929 kb on + strand, within BACOVA_04965at 407.929 kb on + strand, within BACOVA_04965at 408.038 kb on - strand, within BACOVA_04965at 408.042 kb on - strand, within BACOVA_04965at 408.042 kb on - strand, within BACOVA_04965at 408.062 kb on + strand, within BACOVA_04965at 408.064 kb on + strand, within BACOVA_04965at 408.125 kb on - strand, within BACOVA_04965at 408.125 kb on - strand, within BACOVA_04965at 408.134 kb on - strand, within BACOVA_04965at 408.134 kb on - strand, within BACOVA_04965at 408.134 kb on - strand, within BACOVA_04965at 408.153 kb on - strand, within BACOVA_04965at 408.219 kb on - strand, within BACOVA_04965at 408.240 kb on + strand, within BACOVA_04965at 408.241 kb on - strand, within BACOVA_04965at 408.302 kb on + strand, within BACOVA_04965at 408.326 kb on + strand, within BACOVA_04965at 408.327 kb on - strand, within BACOVA_04965at 408.328 kb on + strand, within BACOVA_04965at 408.328 kb on + strand, within BACOVA_04965at 408.329 kb on - strand, within BACOVA_04965at 408.397 kb on - strand, within BACOVA_04965at 408.478 kb on + strand, within BACOVA_04965at 408.483 kb on + strand, within BACOVA_04965at 408.520 kb on - strand, within BACOVA_04965at 408.575 kb on - strandat 408.592 kb on + strandat 408.592 kb on + strandat 408.596 kb on + strandat 408.596 kb on + strandat 408.597 kb on - strandat 408.597 kb on - strandat 408.599 kb on - strandat 408.599 kb on - strandat 408.603 kb on - strandat 408.603 kb on - strandat 408.637 kb on + strandat 408.637 kb on + strandat 408.637 kb on + strandat 408.638 kb on - strandat 408.638 kb on - strandat 408.644 kb on + strandat 408.737 kb on - strandat 408.737 kb on - strandat 408.737 kb on - strandat 408.743 kb on - strandat 408.747 kb on + strandat 408.747 kb on + strandat 408.805 kb on + strandat 408.806 kb on - strandat 408.807 kb on + strandat 408.807 kb on + strandat 408.809 kb on + strandat 408.809 kb on + strandat 408.810 kb on - strandat 408.839 kb on + strandat 408.954 kb on + strandat 408.958 kb on + strandat 409.028 kb on + strand, within BACOVA_04966at 409.047 kb on + strand, within BACOVA_04966at 409.066 kb on + strand, within BACOVA_04966at 409.067 kb on - strand, within BACOVA_04966at 409.067 kb on - strand, within BACOVA_04966at 409.069 kb on - strand, within BACOVA_04966at 409.126 kb on - strand, within BACOVA_04966at 409.126 kb on - strand, within BACOVA_04966at 409.154 kb on + strand, within BACOVA_04966at 409.169 kb on + strand, within BACOVA_04966at 409.170 kb on - strand, within BACOVA_04966at 409.215 kb on + strand, within BACOVA_04966at 409.215 kb on + strand, within BACOVA_04966at 409.221 kb on + strand, within BACOVA_04966at 409.247 kb on - strand, within BACOVA_04966at 409.257 kb on + strand, within BACOVA_04966at 409.258 kb on - strand, within BACOVA_04966at 409.262 kb on + strand, within BACOVA_04966at 409.291 kb on - strand, within BACOVA_04966at 409.295 kb on - strand, within BACOVA_04966at 409.309 kb on - strand, within BACOVA_04966at 409.370 kb on - strand, within BACOVA_04966at 409.470 kb on + strand, within BACOVA_04966at 409.490 kb on - strand, within BACOVA_04966at 409.491 kb on + strand, within BACOVA_04966at 409.500 kb on + strand, within BACOVA_04966at 409.501 kb on - strand, within BACOVA_04966at 409.506 kb on - strand, within BACOVA_04966at 409.530 kb on - strand, within BACOVA_04966at 409.538 kb on + strand, within BACOVA_04966at 409.578 kb on + strand, within BACOVA_04966at 409.588 kb on - strand, within BACOVA_04966at 409.597 kb on + strand, within BACOVA_04966at 409.597 kb on + strand, within BACOVA_04966at 409.597 kb on + strand, within BACOVA_04966at 409.662 kb on + strand, within BACOVA_04966at 409.662 kb on + strand, within BACOVA_04966at 409.668 kb on + strand, within BACOVA_04966at 409.702 kb on + strand, within BACOVA_04966at 409.703 kb on - strand, within BACOVA_04966at 409.711 kb on - strand, within BACOVA_04966at 409.711 kb on - strand, within BACOVA_04966

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 10 mM (C)
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406,067 + BACOVA_04964 0.70 -0.7
406,068 - BACOVA_04964 0.70 -2.8
406,087 + BACOVA_04964 0.71 +0.0
406,088 - BACOVA_04964 0.71 -1.1
406,170 - BACOVA_04964 0.74 -0.1
406,190 - BACOVA_04964 0.74 +0.3
406,216 - BACOVA_04964 0.75 -1.2
406,249 + BACOVA_04964 0.76 -0.6
406,250 - BACOVA_04964 0.76 -1.3
406,250 - BACOVA_04964 0.76 -0.6
406,291 + BACOVA_04964 0.78 -1.1
406,292 - BACOVA_04964 0.78 +0.2
406,329 + BACOVA_04964 0.79 -2.1
406,329 + BACOVA_04964 0.79 +0.1
406,330 - BACOVA_04964 0.79 -1.0
406,330 - BACOVA_04964 0.79 -0.0
406,330 - BACOVA_04964 0.79 +0.0
406,332 - BACOVA_04964 0.79 -0.6
406,342 - BACOVA_04964 0.79 -0.4
406,373 - BACOVA_04964 0.80 +0.1
406,402 + BACOVA_04964 0.81 -2.1
406,486 + BACOVA_04964 0.84 +0.1
406,486 + BACOVA_04964 0.84 +0.3
406,486 + BACOVA_04964 0.84 -0.3
406,551 + BACOVA_04964 0.86 -1.2
406,552 - BACOVA_04964 0.86 -0.4
406,557 + BACOVA_04964 0.86 -0.8
406,557 + BACOVA_04964 0.86 -1.1
406,558 - BACOVA_04964 0.86 +0.2
406,558 - BACOVA_04964 0.86 -0.2
406,607 - BACOVA_04964 0.88 -0.2
406,624 - BACOVA_04964 0.89 +0.8
406,624 - BACOVA_04964 0.89 -1.4
406,628 - BACOVA_04964 0.89 -2.0
406,652 + BACOVA_04964 0.90 -0.4
406,652 + BACOVA_04964 0.90 +0.0
406,692 - -0.2
406,715 - +0.7
406,724 - -0.6
406,790 + -0.2
406,790 + -0.7
406,791 - -0.0
406,791 - +0.5
406,848 + +0.4
406,851 - -1.1
406,851 - -0.3
406,851 - +0.4
406,910 + -0.7
406,941 + -1.2
406,942 - +0.7
406,944 + -0.4
407,008 + -0.9
407,012 + +0.5
407,072 + -0.1
407,073 - +0.8
407,078 - +1.8
407,078 - -0.5
407,081 + -1.1
407,118 + +1.0
407,119 - -0.6
407,137 + -0.3
407,141 + +0.4
407,142 - -0.6
407,172 - BACOVA_04965 0.11 +0.3
407,172 - BACOVA_04965 0.11 -0.2
407,172 - BACOVA_04965 0.11 -1.1
407,174 - BACOVA_04965 0.11 +0.0
407,214 - BACOVA_04965 0.13 +1.2
407,214 - BACOVA_04965 0.13 -0.9
407,219 + BACOVA_04965 0.13 -0.2
407,220 - BACOVA_04965 0.13 -0.8
407,276 - BACOVA_04965 0.17 -0.8
407,300 + BACOVA_04965 0.18 -0.9
407,311 - BACOVA_04965 0.19 +0.3
407,326 - BACOVA_04965 0.19 -1.1
407,327 + BACOVA_04965 0.20 -0.1
407,382 - BACOVA_04965 0.23 +0.2
407,405 - BACOVA_04965 0.24 -0.4
407,417 + BACOVA_04965 0.25 +0.2
407,424 + BACOVA_04965 0.25 -0.4
407,424 + BACOVA_04965 0.25 +0.5
407,441 + BACOVA_04965 0.26 +0.3
407,441 + BACOVA_04965 0.26 +0.2
407,442 - BACOVA_04965 0.26 +1.8
407,448 - BACOVA_04965 0.27 -0.3
407,452 + BACOVA_04965 0.27 -0.8
407,453 - BACOVA_04965 0.27 +0.1
407,468 + BACOVA_04965 0.28 +0.3
407,494 + BACOVA_04965 0.29 +0.9
407,496 + BACOVA_04965 0.29 +0.3
407,497 - BACOVA_04965 0.29 +0.2
407,497 - BACOVA_04965 0.29 -1.6
407,500 - BACOVA_04965 0.30 +0.4
407,518 + BACOVA_04965 0.31 -0.3
407,519 - BACOVA_04965 0.31 -0.6
407,556 - BACOVA_04965 0.33 -1.3
407,557 + BACOVA_04965 0.33 -0.8
407,582 - BACOVA_04965 0.34 -0.5
407,582 - BACOVA_04965 0.34 +0.8
407,588 - BACOVA_04965 0.35 -0.4
407,620 + BACOVA_04965 0.37 +0.2
407,621 - BACOVA_04965 0.37 +0.7
407,633 - BACOVA_04965 0.37 -0.3
407,636 - BACOVA_04965 0.37 +0.4
407,702 + BACOVA_04965 0.41 -0.5
407,718 + BACOVA_04965 0.42 +0.8
407,735 - BACOVA_04965 0.43 +0.2
407,738 - BACOVA_04965 0.43 -0.5
407,761 + BACOVA_04965 0.45 -0.9
407,771 - BACOVA_04965 0.45 -0.1
407,831 + BACOVA_04965 0.49 -0.5
407,858 + BACOVA_04965 0.50 -0.5
407,903 - BACOVA_04965 0.53 +0.2
407,905 + BACOVA_04965 0.53 +1.2
407,929 + BACOVA_04965 0.54 -0.0
407,929 + BACOVA_04965 0.54 -0.9
408,038 - BACOVA_04965 0.61 -0.7
408,042 - BACOVA_04965 0.61 +0.2
408,042 - BACOVA_04965 0.61 -0.4
408,062 + BACOVA_04965 0.62 +0.6
408,064 + BACOVA_04965 0.62 +1.2
408,125 - BACOVA_04965 0.66 -0.5
408,125 - BACOVA_04965 0.66 +0.5
408,134 - BACOVA_04965 0.66 +1.0
408,134 - BACOVA_04965 0.66 -0.4
408,134 - BACOVA_04965 0.66 -0.8
408,153 - BACOVA_04965 0.67 +2.0
408,219 - BACOVA_04965 0.71 -0.3
408,240 + BACOVA_04965 0.73 +0.6
408,241 - BACOVA_04965 0.73 -1.0
408,302 + BACOVA_04965 0.76 -0.1
408,326 + BACOVA_04965 0.78 -1.8
408,327 - BACOVA_04965 0.78 -0.8
408,328 + BACOVA_04965 0.78 -2.7
408,328 + BACOVA_04965 0.78 -0.6
408,329 - BACOVA_04965 0.78 -0.0
408,397 - BACOVA_04965 0.82 -0.6
408,478 + BACOVA_04965 0.86 -0.3
408,483 + BACOVA_04965 0.87 -1.1
408,520 - BACOVA_04965 0.89 +0.9
408,575 - -0.8
408,592 + -0.0
408,592 + +0.3
408,596 + +1.2
408,596 + +0.4
408,597 - -1.7
408,597 - +0.7
408,599 - -1.4
408,599 - -1.1
408,603 - -0.7
408,603 - -0.1
408,637 + +1.3
408,637 + -1.0
408,637 + +0.2
408,638 - -0.1
408,638 - -0.8
408,644 + +0.0
408,737 - +0.1
408,737 - -0.6
408,737 - +0.4
408,743 - +0.0
408,747 + +0.3
408,747 + -0.7
408,805 + -0.9
408,806 - +0.4
408,807 + -0.8
408,807 + +0.1
408,809 + +0.2
408,809 + +0.5
408,810 - +1.1
408,839 + +0.7
408,954 + -0.7
408,958 + +0.5
409,028 + BACOVA_04966 0.11 -0.1
409,047 + BACOVA_04966 0.12 -0.1
409,066 + BACOVA_04966 0.13 -0.9
409,067 - BACOVA_04966 0.13 +1.2
409,067 - BACOVA_04966 0.13 -0.4
409,069 - BACOVA_04966 0.13 -0.0
409,126 - BACOVA_04966 0.16 +0.9
409,126 - BACOVA_04966 0.16 -0.3
409,154 + BACOVA_04966 0.17 -0.9
409,169 + BACOVA_04966 0.18 -0.9
409,170 - BACOVA_04966 0.18 -0.4
409,215 + BACOVA_04966 0.20 +1.4
409,215 + BACOVA_04966 0.20 -1.0
409,221 + BACOVA_04966 0.21 -0.5
409,247 - BACOVA_04966 0.22 +0.3
409,257 + BACOVA_04966 0.22 -1.1
409,258 - BACOVA_04966 0.22 -0.1
409,262 + BACOVA_04966 0.22 -0.1
409,291 - BACOVA_04966 0.24 +0.3
409,295 - BACOVA_04966 0.24 +0.3
409,309 - BACOVA_04966 0.25 -1.6
409,370 - BACOVA_04966 0.28 +0.6
409,470 + BACOVA_04966 0.32 -0.4
409,490 - BACOVA_04966 0.33 -0.3
409,491 + BACOVA_04966 0.33 +1.0
409,500 + BACOVA_04966 0.34 +0.2
409,501 - BACOVA_04966 0.34 -0.6
409,506 - BACOVA_04966 0.34 -0.6
409,530 - BACOVA_04966 0.35 +0.6
409,538 + BACOVA_04966 0.36 +0.4
409,578 + BACOVA_04966 0.38 -0.6
409,588 - BACOVA_04966 0.38 +0.8
409,597 + BACOVA_04966 0.39 -0.3
409,597 + BACOVA_04966 0.39 +0.7
409,597 + BACOVA_04966 0.39 -1.4
409,662 + BACOVA_04966 0.42 -0.3
409,662 + BACOVA_04966 0.42 +0.2
409,668 + BACOVA_04966 0.42 +0.2
409,702 + BACOVA_04966 0.44 -0.8
409,703 - BACOVA_04966 0.44 +0.2
409,711 - BACOVA_04966 0.44 -0.3
409,711 - BACOVA_04966 0.44 -0.1

Or see this region's nucleotide sequence