Experiment: hib MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04393 and OHPLBJKB_04394 are separated by 15 nucleotides OHPLBJKB_04394 and OHPLBJKB_04395 overlap by 8 nucleotides OHPLBJKB_04395 and OHPLBJKB_04396 are separated by 26 nucleotides
OHPLBJKB_04393: OHPLBJKB_04393 - hypothetical protein, at 51,904 to 52,251
_04393
OHPLBJKB_04394: OHPLBJKB_04394 - hypothetical protein, at 52,267 to 53,010
_04394
OHPLBJKB_04395: OHPLBJKB_04395 - hypothetical protein, at 53,003 to 53,260
_04395
OHPLBJKB_04396: OHPLBJKB_04396 - hypothetical protein, at 53,287 to 55,095
_04396
Position (kb) 53
54 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 52.103 kb on + strand, within OHPLBJKB_04393 at 52.106 kb on - strand, within OHPLBJKB_04393 at 52.251 kb on + strand at 52.332 kb on + strand at 52.341 kb on - strand at 52.397 kb on + strand, within OHPLBJKB_04394 at 52.398 kb on - strand, within OHPLBJKB_04394 at 52.499 kb on + strand, within OHPLBJKB_04394 at 52.499 kb on + strand, within OHPLBJKB_04394 at 52.500 kb on - strand, within OHPLBJKB_04394 at 52.500 kb on - strand, within OHPLBJKB_04394 at 52.500 kb on - strand, within OHPLBJKB_04394 at 52.500 kb on - strand, within OHPLBJKB_04394 at 52.500 kb on - strand, within OHPLBJKB_04394 at 52.500 kb on - strand, within OHPLBJKB_04394 at 52.503 kb on + strand, within OHPLBJKB_04394 at 52.658 kb on + strand, within OHPLBJKB_04394 at 52.659 kb on - strand, within OHPLBJKB_04394 at 52.678 kb on - strand, within OHPLBJKB_04394 at 52.679 kb on + strand, within OHPLBJKB_04394 at 52.679 kb on + strand, within OHPLBJKB_04394 at 52.812 kb on - strand, within OHPLBJKB_04394 at 52.858 kb on - strand, within OHPLBJKB_04394 at 52.858 kb on - strand, within OHPLBJKB_04394 at 52.860 kb on + strand, within OHPLBJKB_04394 at 52.897 kb on - strand, within OHPLBJKB_04394 at 52.931 kb on + strand, within OHPLBJKB_04394 at 52.997 kb on - strand at 53.176 kb on + strand, within OHPLBJKB_04395 at 53.177 kb on - strand, within OHPLBJKB_04395 at 53.181 kb on - strand, within OHPLBJKB_04395 at 53.230 kb on + strand, within OHPLBJKB_04395 at 53.284 kb on - strand at 53.288 kb on + strand at 53.288 kb on + strand at 53.289 kb on - strand at 53.387 kb on + strand at 53.387 kb on + strand at 53.395 kb on - strand at 53.442 kb on + strand at 53.442 kb on + strand at 53.519 kb on - strand, within OHPLBJKB_04396 at 53.549 kb on + strand, within OHPLBJKB_04396 at 53.550 kb on - strand, within OHPLBJKB_04396 at 53.550 kb on - strand, within OHPLBJKB_04396 at 53.550 kb on - strand, within OHPLBJKB_04396 at 53.704 kb on - strand, within OHPLBJKB_04396 at 53.737 kb on - strand, within OHPLBJKB_04396 at 53.799 kb on + strand, within OHPLBJKB_04396 at 53.850 kb on + strand, within OHPLBJKB_04396 at 53.850 kb on + strand, within OHPLBJKB_04396 at 53.948 kb on + strand, within OHPLBJKB_04396 at 53.948 kb on + strand, within OHPLBJKB_04396 at 53.949 kb on - strand, within OHPLBJKB_04396 at 53.949 kb on - strand, within OHPLBJKB_04396 at 53.949 kb on - strand, within OHPLBJKB_04396 at 53.958 kb on - strand, within OHPLBJKB_04396 at 54.016 kb on - strand, within OHPLBJKB_04396 at 54.035 kb on + strand, within OHPLBJKB_04396 at 54.036 kb on - strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.074 kb on + strand, within OHPLBJKB_04396 at 54.075 kb on - strand, within OHPLBJKB_04396 at 54.075 kb on - strand, within OHPLBJKB_04396 at 54.075 kb on - strand, within OHPLBJKB_04396 at 54.075 kb on - strand, within OHPLBJKB_04396 at 54.075 kb on - strand, within OHPLBJKB_04396 at 54.075 kb on - strand, within OHPLBJKB_04396 at 54.075 kb on - strand, within OHPLBJKB_04396 at 54.104 kb on + strand, within OHPLBJKB_04396 at 54.105 kb on - strand, within OHPLBJKB_04396 at 54.105 kb on - strand, within OHPLBJKB_04396 at 54.113 kb on + strand, within OHPLBJKB_04396 at 54.113 kb on + strand, within OHPLBJKB_04396 at 54.113 kb on + strand, within OHPLBJKB_04396 at 54.114 kb on - strand, within OHPLBJKB_04396 at 54.234 kb on - strand, within OHPLBJKB_04396
Per-strain Table
Position Strand Gene LocusTag Fraction hib MOI10 remove 52,103 + OHPLBJKB_04393 0.57 +4.1 52,106 - OHPLBJKB_04393 0.58 -0.9 52,251 + +3.0 52,332 + +5.7 52,341 - +4.7 52,397 + OHPLBJKB_04394 0.17 +4.8 52,398 - OHPLBJKB_04394 0.18 +5.4 52,499 + OHPLBJKB_04394 0.31 +4.5 52,499 + OHPLBJKB_04394 0.31 +5.6 52,500 - OHPLBJKB_04394 0.31 +5.3 52,500 - OHPLBJKB_04394 0.31 +5.9 52,500 - OHPLBJKB_04394 0.31 +5.1 52,500 - OHPLBJKB_04394 0.31 +5.6 52,500 - OHPLBJKB_04394 0.31 +5.9 52,500 - OHPLBJKB_04394 0.31 +4.8 52,503 + OHPLBJKB_04394 0.32 +5.3 52,658 + OHPLBJKB_04394 0.53 +4.4 52,659 - OHPLBJKB_04394 0.53 +6.1 52,678 - OHPLBJKB_04394 0.55 +4.0 52,679 + OHPLBJKB_04394 0.55 +4.1 52,679 + OHPLBJKB_04394 0.55 +5.7 52,812 - OHPLBJKB_04394 0.73 +5.7 52,858 - OHPLBJKB_04394 0.79 +5.2 52,858 - OHPLBJKB_04394 0.79 +6.0 52,860 + OHPLBJKB_04394 0.80 +4.9 52,897 - OHPLBJKB_04394 0.85 +4.9 52,931 + OHPLBJKB_04394 0.89 +4.7 52,997 - +5.8 53,176 + OHPLBJKB_04395 0.67 +4.7 53,177 - OHPLBJKB_04395 0.67 -1.0 53,181 - OHPLBJKB_04395 0.69 -1.2 53,230 + OHPLBJKB_04395 0.88 +4.2 53,284 - +0.8 53,288 + +4.3 53,288 + +4.4 53,289 - -0.0 53,387 + +4.2 53,387 + +4.3 53,395 - +2.3 53,442 + +3.7 53,442 + +5.1 53,519 - OHPLBJKB_04396 0.13 +3.8 53,549 + OHPLBJKB_04396 0.14 +4.7 53,550 - OHPLBJKB_04396 0.15 +3.8 53,550 - OHPLBJKB_04396 0.15 +2.5 53,550 - OHPLBJKB_04396 0.15 +3.2 53,704 - OHPLBJKB_04396 0.23 +2.9 53,737 - OHPLBJKB_04396 0.25 +2.9 53,799 + OHPLBJKB_04396 0.28 +5.0 53,850 + OHPLBJKB_04396 0.31 +4.3 53,850 + OHPLBJKB_04396 0.31 +6.2 53,948 + OHPLBJKB_04396 0.37 +5.1 53,948 + OHPLBJKB_04396 0.37 +4.4 53,949 - OHPLBJKB_04396 0.37 +2.1 53,949 - OHPLBJKB_04396 0.37 +5.1 53,949 - OHPLBJKB_04396 0.37 +1.9 53,958 - OHPLBJKB_04396 0.37 +3.4 54,016 - OHPLBJKB_04396 0.40 +4.1 54,035 + OHPLBJKB_04396 0.41 +5.7 54,036 - OHPLBJKB_04396 0.41 +3.1 54,074 + OHPLBJKB_04396 0.44 +5.7 54,074 + OHPLBJKB_04396 0.44 +4.9 54,074 + OHPLBJKB_04396 0.44 +4.7 54,074 + OHPLBJKB_04396 0.44 +4.0 54,074 + OHPLBJKB_04396 0.44 +3.7 54,074 + OHPLBJKB_04396 0.44 +5.2 54,074 + OHPLBJKB_04396 0.44 +5.1 54,074 + OHPLBJKB_04396 0.44 +5.1 54,074 + OHPLBJKB_04396 0.44 +5.1 54,074 + OHPLBJKB_04396 0.44 +4.1 54,075 - OHPLBJKB_04396 0.44 +3.2 54,075 - OHPLBJKB_04396 0.44 +4.4 54,075 - OHPLBJKB_04396 0.44 +3.6 54,075 - OHPLBJKB_04396 0.44 +3.8 54,075 - OHPLBJKB_04396 0.44 +3.4 54,075 - OHPLBJKB_04396 0.44 +4.7 54,075 - OHPLBJKB_04396 0.44 +3.6 54,104 + OHPLBJKB_04396 0.45 +5.8 54,105 - OHPLBJKB_04396 0.45 +3.6 54,105 - OHPLBJKB_04396 0.45 +2.5 54,113 + OHPLBJKB_04396 0.46 +5.4 54,113 + OHPLBJKB_04396 0.46 +5.4 54,113 + OHPLBJKB_04396 0.46 +4.1 54,114 - OHPLBJKB_04396 0.46 +3.5 54,234 - OHPLBJKB_04396 0.52 +3.7
Or see this region's nucleotide sequence