Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00771

Experiment: hib MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00769 and OHPLBJKB_00770 overlap by 1 nucleotidesOHPLBJKB_00770 and OHPLBJKB_00771 are separated by 36 nucleotidesOHPLBJKB_00771 and OHPLBJKB_00772 are separated by 12 nucleotidesOHPLBJKB_00772 and OHPLBJKB_00773 are separated by 79 nucleotides OHPLBJKB_00769: OHPLBJKB_00769 - Putative pre-16S rRNA nuclease, at 789,346 to 789,762 _00769 OHPLBJKB_00770: OHPLBJKB_00770 - hypothetical protein, at 789,762 to 790,397 _00770 OHPLBJKB_00771: OHPLBJKB_00771 - Glutathione synthetase, at 790,434 to 791,384 _00771 OHPLBJKB_00772: OHPLBJKB_00772 - Ribosomal RNA small subunit methyltransferase E, at 791,397 to 792,128 _00772 OHPLBJKB_00773: OHPLBJKB_00773 - Endonuclease-1, at 792,208 to 792,915 _00773 Position (kb) 790 791 792Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 789.955 kb on - strand, within OHPLBJKB_00770at 790.239 kb on - strand, within OHPLBJKB_00770at 790.239 kb on - strand, within OHPLBJKB_00770at 790.239 kb on - strand, within OHPLBJKB_00770at 790.302 kb on - strand, within OHPLBJKB_00770at 790.318 kb on - strand, within OHPLBJKB_00770at 790.372 kb on - strandat 790.425 kb on + strandat 790.425 kb on + strandat 790.436 kb on - strandat 790.517 kb on + strandat 790.723 kb on + strand, within OHPLBJKB_00771at 790.907 kb on + strand, within OHPLBJKB_00771at 790.908 kb on - strand, within OHPLBJKB_00771at 790.908 kb on - strand, within OHPLBJKB_00771at 790.908 kb on - strand, within OHPLBJKB_00771at 790.945 kb on - strand, within OHPLBJKB_00771at 790.955 kb on + strand, within OHPLBJKB_00771at 790.956 kb on - strand, within OHPLBJKB_00771at 791.084 kb on + strand, within OHPLBJKB_00771at 791.084 kb on + strand, within OHPLBJKB_00771at 791.086 kb on + strand, within OHPLBJKB_00771at 791.086 kb on + strand, within OHPLBJKB_00771at 791.087 kb on - strand, within OHPLBJKB_00771at 791.096 kb on - strand, within OHPLBJKB_00771at 791.126 kb on + strand, within OHPLBJKB_00771at 791.197 kb on + strand, within OHPLBJKB_00771at 791.197 kb on + strand, within OHPLBJKB_00771at 791.198 kb on - strand, within OHPLBJKB_00771at 791.254 kb on + strand, within OHPLBJKB_00771at 791.273 kb on + strand, within OHPLBJKB_00771at 791.274 kb on - strand, within OHPLBJKB_00771at 791.274 kb on - strand, within OHPLBJKB_00771at 791.275 kb on + strand, within OHPLBJKB_00771at 791.275 kb on + strand, within OHPLBJKB_00771at 791.275 kb on + strand, within OHPLBJKB_00771at 791.275 kb on + strand, within OHPLBJKB_00771at 791.276 kb on - strand, within OHPLBJKB_00771at 791.276 kb on - strand, within OHPLBJKB_00771at 791.386 kb on - strandat 791.386 kb on - strandat 791.386 kb on - strandat 791.418 kb on + strandat 791.418 kb on + strandat 791.419 kb on - strandat 791.419 kb on - strandat 791.425 kb on - strandat 791.501 kb on - strand, within OHPLBJKB_00772at 791.588 kb on + strand, within OHPLBJKB_00772at 791.588 kb on + strand, within OHPLBJKB_00772at 791.589 kb on - strand, within OHPLBJKB_00772at 791.589 kb on - strand, within OHPLBJKB_00772at 791.808 kb on - strand, within OHPLBJKB_00772at 791.808 kb on - strand, within OHPLBJKB_00772at 791.808 kb on - strand, within OHPLBJKB_00772at 791.817 kb on + strand, within OHPLBJKB_00772at 791.817 kb on + strand, within OHPLBJKB_00772at 791.817 kb on + strand, within OHPLBJKB_00772at 791.818 kb on - strand, within OHPLBJKB_00772at 791.818 kb on - strand, within OHPLBJKB_00772at 791.846 kb on + strand, within OHPLBJKB_00772at 791.846 kb on + strand, within OHPLBJKB_00772at 791.847 kb on - strand, within OHPLBJKB_00772at 791.847 kb on - strand, within OHPLBJKB_00772at 791.892 kb on - strand, within OHPLBJKB_00772at 791.892 kb on - strand, within OHPLBJKB_00772at 792.109 kb on + strandat 792.123 kb on - strandat 792.128 kb on + strandat 792.128 kb on + strandat 792.128 kb on + strandat 792.128 kb on + strandat 792.129 kb on - strandat 792.164 kb on - strandat 792.204 kb on + strandat 792.204 kb on + strandat 792.204 kb on + strandat 792.204 kb on + strandat 792.205 kb on - strandat 792.205 kb on - strandat 792.205 kb on - strandat 792.209 kb on + strandat 792.210 kb on - strandat 792.210 kb on - strandat 792.243 kb on - strandat 792.249 kb on + strandat 792.250 kb on - strandat 792.311 kb on + strand, within OHPLBJKB_00773at 792.312 kb on - strand, within OHPLBJKB_00773at 792.312 kb on - strand, within OHPLBJKB_00773at 792.368 kb on + strand, within OHPLBJKB_00773at 792.368 kb on + strand, within OHPLBJKB_00773at 792.368 kb on + strand, within OHPLBJKB_00773at 792.368 kb on + strand, within OHPLBJKB_00773at 792.368 kb on + strand, within OHPLBJKB_00773at 792.369 kb on - strand, within OHPLBJKB_00773at 792.382 kb on - strand, within OHPLBJKB_00773at 792.383 kb on + strand, within OHPLBJKB_00773at 792.383 kb on + strand, within OHPLBJKB_00773at 792.383 kb on + strand, within OHPLBJKB_00773at 792.383 kb on + strand, within OHPLBJKB_00773at 792.383 kb on + strand, within OHPLBJKB_00773at 792.383 kb on + strand, within OHPLBJKB_00773at 792.383 kb on + strand, within OHPLBJKB_00773at 792.384 kb on - strand, within OHPLBJKB_00773at 792.384 kb on - strand, within OHPLBJKB_00773at 792.384 kb on - strand, within OHPLBJKB_00773at 792.384 kb on - strand, within OHPLBJKB_00773at 792.384 kb on - strand, within OHPLBJKB_00773

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI10
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789,955 - OHPLBJKB_00770 0.30 +0.2
790,239 - OHPLBJKB_00770 0.75 +2.4
790,239 - OHPLBJKB_00770 0.75 +1.6
790,239 - OHPLBJKB_00770 0.75 +0.5
790,302 - OHPLBJKB_00770 0.85 -1.3
790,318 - OHPLBJKB_00770 0.87 -0.5
790,372 - -0.5
790,425 + -0.7
790,425 + +0.1
790,436 - -0.5
790,517 + +2.2
790,723 + OHPLBJKB_00771 0.30 +2.5
790,907 + OHPLBJKB_00771 0.50 +0.0
790,908 - OHPLBJKB_00771 0.50 -0.7
790,908 - OHPLBJKB_00771 0.50 +2.5
790,908 - OHPLBJKB_00771 0.50 +2.9
790,945 - OHPLBJKB_00771 0.54 +0.1
790,955 + OHPLBJKB_00771 0.55 +2.8
790,956 - OHPLBJKB_00771 0.55 +0.2
791,084 + OHPLBJKB_00771 0.68 +1.9
791,084 + OHPLBJKB_00771 0.68 +2.5
791,086 + OHPLBJKB_00771 0.69 +0.8
791,086 + OHPLBJKB_00771 0.69 +0.2
791,087 - OHPLBJKB_00771 0.69 +1.4
791,096 - OHPLBJKB_00771 0.70 +1.2
791,126 + OHPLBJKB_00771 0.73 +1.5
791,197 + OHPLBJKB_00771 0.80 +2.0
791,197 + OHPLBJKB_00771 0.80 +1.9
791,198 - OHPLBJKB_00771 0.80 -0.5
791,254 + OHPLBJKB_00771 0.86 +1.8
791,273 + OHPLBJKB_00771 0.88 +1.5
791,274 - OHPLBJKB_00771 0.88 +1.7
791,274 - OHPLBJKB_00771 0.88 +1.7
791,275 + OHPLBJKB_00771 0.88 +0.8
791,275 + OHPLBJKB_00771 0.88 +0.5
791,275 + OHPLBJKB_00771 0.88 +2.6
791,275 + OHPLBJKB_00771 0.88 +3.6
791,276 - OHPLBJKB_00771 0.89 +0.5
791,276 - OHPLBJKB_00771 0.89 -0.5
791,386 - +1.6
791,386 - -0.6
791,386 - -0.3
791,418 + -1.0
791,418 + +0.5
791,419 - +0.2
791,419 - +2.6
791,425 - +0.7
791,501 - OHPLBJKB_00772 0.14 +0.4
791,588 + OHPLBJKB_00772 0.26 +1.2
791,588 + OHPLBJKB_00772 0.26 -0.7
791,589 - OHPLBJKB_00772 0.26 +0.5
791,589 - OHPLBJKB_00772 0.26 +1.6
791,808 - OHPLBJKB_00772 0.56 +1.6
791,808 - OHPLBJKB_00772 0.56 -0.7
791,808 - OHPLBJKB_00772 0.56 +1.2
791,817 + OHPLBJKB_00772 0.57 -0.5
791,817 + OHPLBJKB_00772 0.57 -0.6
791,817 + OHPLBJKB_00772 0.57 -0.5
791,818 - OHPLBJKB_00772 0.58 +1.0
791,818 - OHPLBJKB_00772 0.58 +1.8
791,846 + OHPLBJKB_00772 0.61 +0.8
791,846 + OHPLBJKB_00772 0.61 -0.5
791,847 - OHPLBJKB_00772 0.61 +0.7
791,847 - OHPLBJKB_00772 0.61 +0.6
791,892 - OHPLBJKB_00772 0.68 -0.5
791,892 - OHPLBJKB_00772 0.68 +0.8
792,109 + +0.8
792,123 - +0.6
792,128 + +0.5
792,128 + +0.2
792,128 + +0.3
792,128 + -1.6
792,129 - +0.5
792,164 - -0.3
792,204 + +1.4
792,204 + +0.2
792,204 + +0.4
792,204 + +0.5
792,205 - -0.8
792,205 - -3.0
792,205 - -0.8
792,209 + +0.3
792,210 - +0.7
792,210 - -0.8
792,243 - +0.3
792,249 + +0.2
792,250 - -0.4
792,311 + OHPLBJKB_00773 0.15 -0.1
792,312 - OHPLBJKB_00773 0.15 +0.0
792,312 - OHPLBJKB_00773 0.15 -0.5
792,368 + OHPLBJKB_00773 0.23 -0.8
792,368 + OHPLBJKB_00773 0.23 -0.5
792,368 + OHPLBJKB_00773 0.23 +0.5
792,368 + OHPLBJKB_00773 0.23 -1.2
792,368 + OHPLBJKB_00773 0.23 +1.5
792,369 - OHPLBJKB_00773 0.23 -1.9
792,382 - OHPLBJKB_00773 0.25 -0.3
792,383 + OHPLBJKB_00773 0.25 +0.9
792,383 + OHPLBJKB_00773 0.25 +0.1
792,383 + OHPLBJKB_00773 0.25 +0.3
792,383 + OHPLBJKB_00773 0.25 +0.3
792,383 + OHPLBJKB_00773 0.25 -0.3
792,383 + OHPLBJKB_00773 0.25 -1.4
792,383 + OHPLBJKB_00773 0.25 -2.7
792,384 - OHPLBJKB_00773 0.25 -2.2
792,384 - OHPLBJKB_00773 0.25 +0.5
792,384 - OHPLBJKB_00773 0.25 +0.5
792,384 - OHPLBJKB_00773 0.25 -2.6
792,384 - OHPLBJKB_00773 0.25 +0.1

Or see this region's nucleotide sequence