Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00549

Experiment: hib MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00547 and OHPLBJKB_00548 are separated by 127 nucleotidesOHPLBJKB_00548 and OHPLBJKB_00549 are separated by 72 nucleotidesOHPLBJKB_00549 and OHPLBJKB_00550 are separated by 113 nucleotidesOHPLBJKB_00550 and OHPLBJKB_00551 are separated by 9 nucleotides OHPLBJKB_00547: OHPLBJKB_00547 - Protein/nucleic acid deglycase 2, at 560,483 to 561,001 _00547 OHPLBJKB_00548: OHPLBJKB_00548 - hypothetical protein, at 561,129 to 561,764 _00548 OHPLBJKB_00549: OHPLBJKB_00549 - hypothetical protein, at 561,837 to 562,877 _00549 OHPLBJKB_00550: OHPLBJKB_00550 - Osmotically-inducible protein Y, at 562,991 to 563,566 _00550 OHPLBJKB_00551: OHPLBJKB_00551 - DnaA initiator-associating protein DiaA, at 563,576 to 564,166 _00551 Position (kb) 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 560.902 kb on + strand, within OHPLBJKB_00547at 560.902 kb on + strand, within OHPLBJKB_00547at 560.947 kb on + strand, within OHPLBJKB_00547at 560.947 kb on + strand, within OHPLBJKB_00547at 560.948 kb on - strand, within OHPLBJKB_00547at 560.948 kb on - strand, within OHPLBJKB_00547at 561.057 kb on + strandat 561.057 kb on + strandat 561.057 kb on + strandat 561.057 kb on + strandat 561.058 kb on - strandat 561.058 kb on - strandat 561.058 kb on - strandat 561.070 kb on - strandat 561.070 kb on - strandat 561.070 kb on - strandat 561.072 kb on + strandat 561.073 kb on - strandat 561.139 kb on + strandat 561.378 kb on - strand, within OHPLBJKB_00548at 561.391 kb on - strand, within OHPLBJKB_00548at 561.443 kb on + strand, within OHPLBJKB_00548at 561.444 kb on - strand, within OHPLBJKB_00548at 561.444 kb on - strand, within OHPLBJKB_00548at 561.444 kb on - strand, within OHPLBJKB_00548at 561.444 kb on - strand, within OHPLBJKB_00548at 561.493 kb on - strand, within OHPLBJKB_00548at 561.526 kb on + strand, within OHPLBJKB_00548at 561.731 kb on - strandat 561.763 kb on - strandat 561.763 kb on - strandat 561.795 kb on - strandat 561.820 kb on + strandat 561.821 kb on - strandat 561.821 kb on - strandat 561.821 kb on - strandat 561.821 kb on - strandat 561.837 kb on - strandat 561.927 kb on + strandat 561.928 kb on - strandat 561.945 kb on + strand, within OHPLBJKB_00549at 561.945 kb on + strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.946 kb on - strand, within OHPLBJKB_00549at 561.948 kb on + strand, within OHPLBJKB_00549at 561.948 kb on + strand, within OHPLBJKB_00549at 561.948 kb on + strand, within OHPLBJKB_00549at 561.949 kb on - strand, within OHPLBJKB_00549at 561.983 kb on + strand, within OHPLBJKB_00549at 562.053 kb on + strand, within OHPLBJKB_00549at 562.142 kb on + strand, within OHPLBJKB_00549at 562.212 kb on - strand, within OHPLBJKB_00549at 562.212 kb on - strand, within OHPLBJKB_00549at 562.527 kb on - strand, within OHPLBJKB_00549at 562.539 kb on + strand, within OHPLBJKB_00549at 562.540 kb on - strand, within OHPLBJKB_00549at 562.540 kb on - strand, within OHPLBJKB_00549at 562.540 kb on - strand, within OHPLBJKB_00549at 562.690 kb on + strand, within OHPLBJKB_00549at 562.691 kb on - strand, within OHPLBJKB_00549at 562.691 kb on - strand, within OHPLBJKB_00549at 562.713 kb on - strand, within OHPLBJKB_00549at 562.713 kb on - strand, within OHPLBJKB_00549at 562.778 kb on + strandat 562.778 kb on + strandat 562.778 kb on + strandat 562.779 kb on - strandat 562.907 kb on - strandat 562.915 kb on + strandat 562.933 kb on + strandat 562.942 kb on - strandat 562.951 kb on - strandat 562.979 kb on + strandat 562.979 kb on + strandat 562.992 kb on + strandat 562.993 kb on - strandat 562.996 kb on + strandat 562.997 kb on - strandat 563.005 kb on + strandat 563.005 kb on + strandat 563.014 kb on + strandat 563.018 kb on + strandat 563.051 kb on - strand, within OHPLBJKB_00550at 563.197 kb on + strand, within OHPLBJKB_00550at 563.197 kb on + strand, within OHPLBJKB_00550at 563.197 kb on + strand, within OHPLBJKB_00550at 563.197 kb on + strand, within OHPLBJKB_00550at 563.197 kb on + strand, within OHPLBJKB_00550at 563.198 kb on - strand, within OHPLBJKB_00550at 563.198 kb on - strand, within OHPLBJKB_00550at 563.244 kb on + strand, within OHPLBJKB_00550at 563.244 kb on + strand, within OHPLBJKB_00550at 563.245 kb on - strand, within OHPLBJKB_00550at 563.245 kb on - strand, within OHPLBJKB_00550at 563.245 kb on - strand, within OHPLBJKB_00550at 563.245 kb on - strand, within OHPLBJKB_00550at 563.264 kb on + strand, within OHPLBJKB_00550at 563.265 kb on - strand, within OHPLBJKB_00550at 563.352 kb on - strand, within OHPLBJKB_00550at 563.352 kb on - strand, within OHPLBJKB_00550at 563.352 kb on - strand, within OHPLBJKB_00550at 563.352 kb on - strand, within OHPLBJKB_00550at 563.356 kb on + strand, within OHPLBJKB_00550at 563.357 kb on - strand, within OHPLBJKB_00550at 563.422 kb on + strand, within OHPLBJKB_00550at 563.568 kb on + strandat 563.568 kb on + strandat 563.568 kb on + strandat 563.569 kb on - strandat 563.569 kb on - strandat 563.641 kb on + strand, within OHPLBJKB_00551at 563.641 kb on + strand, within OHPLBJKB_00551at 563.642 kb on - strand, within OHPLBJKB_00551at 563.789 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.831 kb on + strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.832 kb on - strand, within OHPLBJKB_00551at 563.871 kb on + strand, within OHPLBJKB_00551at 563.871 kb on + strand, within OHPLBJKB_00551at 563.871 kb on + strand, within OHPLBJKB_00551at 563.872 kb on - strand, within OHPLBJKB_00551

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI10
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560,902 + OHPLBJKB_00547 0.81 -1.0
560,902 + OHPLBJKB_00547 0.81 -0.1
560,947 + OHPLBJKB_00547 0.89 -0.4
560,947 + OHPLBJKB_00547 0.89 -0.1
560,948 - OHPLBJKB_00547 0.90 +0.9
560,948 - OHPLBJKB_00547 0.90 -0.2
561,057 + -0.3
561,057 + +0.6
561,057 + -1.2
561,057 + -0.2
561,058 - -1.3
561,058 - -0.3
561,058 - -1.4
561,070 - +0.3
561,070 - -1.1
561,070 - +1.8
561,072 + +0.7
561,073 - -2.4
561,139 + +1.5
561,378 - OHPLBJKB_00548 0.39 -1.0
561,391 - OHPLBJKB_00548 0.41 +0.6
561,443 + OHPLBJKB_00548 0.49 -0.3
561,444 - OHPLBJKB_00548 0.50 -2.6
561,444 - OHPLBJKB_00548 0.50 +0.0
561,444 - OHPLBJKB_00548 0.50 +0.6
561,444 - OHPLBJKB_00548 0.50 -0.8
561,493 - OHPLBJKB_00548 0.57 -0.4
561,526 + OHPLBJKB_00548 0.62 -1.2
561,731 - -1.7
561,763 - -1.3
561,763 - +0.6
561,795 - +0.3
561,820 + -0.5
561,821 - -0.6
561,821 - +0.8
561,821 - -1.1
561,821 - -0.4
561,837 - -0.3
561,927 + -0.4
561,928 - +0.1
561,945 + OHPLBJKB_00549 0.10 +0.1
561,945 + OHPLBJKB_00549 0.10 -0.1
561,946 - OHPLBJKB_00549 0.10 -0.6
561,946 - OHPLBJKB_00549 0.10 -1.5
561,946 - OHPLBJKB_00549 0.10 -0.3
561,946 - OHPLBJKB_00549 0.10 -0.8
561,946 - OHPLBJKB_00549 0.10 -1.5
561,946 - OHPLBJKB_00549 0.10 -1.4
561,948 + OHPLBJKB_00549 0.11 -0.3
561,948 + OHPLBJKB_00549 0.11 -0.3
561,948 + OHPLBJKB_00549 0.11 +0.5
561,949 - OHPLBJKB_00549 0.11 +1.1
561,983 + OHPLBJKB_00549 0.14 -1.4
562,053 + OHPLBJKB_00549 0.21 -1.9
562,142 + OHPLBJKB_00549 0.29 +0.3
562,212 - OHPLBJKB_00549 0.36 -1.4
562,212 - OHPLBJKB_00549 0.36 -1.2
562,527 - OHPLBJKB_00549 0.66 -1.3
562,539 + OHPLBJKB_00549 0.67 -1.3
562,540 - OHPLBJKB_00549 0.68 -0.0
562,540 - OHPLBJKB_00549 0.68 -0.1
562,540 - OHPLBJKB_00549 0.68 -0.7
562,690 + OHPLBJKB_00549 0.82 -0.5
562,691 - OHPLBJKB_00549 0.82 -0.2
562,691 - OHPLBJKB_00549 0.82 -0.3
562,713 - OHPLBJKB_00549 0.84 +0.8
562,713 - OHPLBJKB_00549 0.84 +0.0
562,778 + +0.1
562,778 + -0.3
562,778 + +0.6
562,779 - +0.1
562,907 - -1.1
562,915 + -1.5
562,933 + +0.6
562,942 - +1.4
562,951 - -2.1
562,979 + +1.1
562,979 + -0.3
562,992 + +0.6
562,993 - -1.3
562,996 + -1.1
562,997 - +2.2
563,005 + +2.1
563,005 + -2.1
563,014 + +0.7
563,018 + -2.9
563,051 - OHPLBJKB_00550 0.10 -0.7
563,197 + OHPLBJKB_00550 0.36 -1.5
563,197 + OHPLBJKB_00550 0.36 -0.4
563,197 + OHPLBJKB_00550 0.36 -0.4
563,197 + OHPLBJKB_00550 0.36 +0.2
563,197 + OHPLBJKB_00550 0.36 -0.2
563,198 - OHPLBJKB_00550 0.36 -0.9
563,198 - OHPLBJKB_00550 0.36 +0.1
563,244 + OHPLBJKB_00550 0.44 +2.0
563,244 + OHPLBJKB_00550 0.44 -0.3
563,245 - OHPLBJKB_00550 0.44 +0.9
563,245 - OHPLBJKB_00550 0.44 -0.3
563,245 - OHPLBJKB_00550 0.44 -2.3
563,245 - OHPLBJKB_00550 0.44 +1.4
563,264 + OHPLBJKB_00550 0.47 -1.0
563,265 - OHPLBJKB_00550 0.48 +2.2
563,352 - OHPLBJKB_00550 0.63 +0.1
563,352 - OHPLBJKB_00550 0.63 -0.7
563,352 - OHPLBJKB_00550 0.63 +1.3
563,352 - OHPLBJKB_00550 0.63 +0.4
563,356 + OHPLBJKB_00550 0.63 -2.1
563,357 - OHPLBJKB_00550 0.64 -0.3
563,422 + OHPLBJKB_00550 0.75 +1.7
563,568 + -0.7
563,568 + +0.9
563,568 + +0.1
563,569 - -1.5
563,569 - -0.2
563,641 + OHPLBJKB_00551 0.11 -1.8
563,641 + OHPLBJKB_00551 0.11 +0.1
563,642 - OHPLBJKB_00551 0.11 +0.4
563,789 + OHPLBJKB_00551 0.36 -0.9
563,831 + OHPLBJKB_00551 0.43 -0.9
563,831 + OHPLBJKB_00551 0.43 +0.5
563,831 + OHPLBJKB_00551 0.43 -0.9
563,831 + OHPLBJKB_00551 0.43 -0.2
563,831 + OHPLBJKB_00551 0.43 -0.2
563,831 + OHPLBJKB_00551 0.43 +0.4
563,831 + OHPLBJKB_00551 0.43 -0.9
563,831 + OHPLBJKB_00551 0.43 -0.6
563,831 + OHPLBJKB_00551 0.43 -0.4
563,831 + OHPLBJKB_00551 0.43 -0.1
563,832 - OHPLBJKB_00551 0.43 -0.1
563,832 - OHPLBJKB_00551 0.43 +0.6
563,832 - OHPLBJKB_00551 0.43 -0.7
563,832 - OHPLBJKB_00551 0.43 -0.6
563,832 - OHPLBJKB_00551 0.43 +0.3
563,832 - OHPLBJKB_00551 0.43 -0.9
563,832 - OHPLBJKB_00551 0.43 -0.4
563,832 - OHPLBJKB_00551 0.43 -0.3
563,832 - OHPLBJKB_00551 0.43 +1.6
563,832 - OHPLBJKB_00551 0.43 +0.8
563,832 - OHPLBJKB_00551 0.43 +0.3
563,871 + OHPLBJKB_00551 0.50 -0.6
563,871 + OHPLBJKB_00551 0.50 -0.2
563,871 + OHPLBJKB_00551 0.50 -1.4
563,872 - OHPLBJKB_00551 0.50 +0.1

Or see this region's nucleotide sequence