Experiment: hib MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00263 and OHPLBJKB_00264 are separated by 223 nucleotides OHPLBJKB_00264 and OHPLBJKB_00265 are separated by 138 nucleotides OHPLBJKB_00265 and OHPLBJKB_00266 are separated by 3 nucleotides
OHPLBJKB_00263: OHPLBJKB_00263 - Quercetin 2,3-dioxygenase, at 284,220 to 284,915
_00263
OHPLBJKB_00264: OHPLBJKB_00264 - HTH-type transcriptional regulator GntR, at 285,139 to 286,134
_00264
OHPLBJKB_00265: OHPLBJKB_00265 - Thermoresistant gluconokinase, at 286,273 to 286,800
_00265
OHPLBJKB_00266: OHPLBJKB_00266 - Low-affinity gluconate transporter, at 286,804 to 288,144
_00266
Position (kb) 285
286
287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 284.158 kb on - strand at 284.185 kb on + strand at 284.186 kb on - strand at 284.215 kb on + strand at 284.216 kb on - strand at 284.226 kb on + strand at 284.226 kb on + strand at 284.227 kb on - strand at 284.227 kb on - strand at 284.230 kb on + strand at 284.230 kb on + strand at 284.231 kb on - strand at 284.285 kb on + strand at 284.285 kb on + strand at 284.285 kb on + strand at 284.286 kb on - strand at 284.304 kb on + strand, within OHPLBJKB_00263 at 284.304 kb on + strand, within OHPLBJKB_00263 at 284.304 kb on + strand, within OHPLBJKB_00263 at 284.304 kb on + strand, within OHPLBJKB_00263 at 284.305 kb on - strand, within OHPLBJKB_00263 at 284.305 kb on - strand, within OHPLBJKB_00263 at 284.305 kb on - strand, within OHPLBJKB_00263 at 284.307 kb on + strand, within OHPLBJKB_00263 at 284.308 kb on - strand, within OHPLBJKB_00263 at 284.396 kb on + strand, within OHPLBJKB_00263 at 284.396 kb on + strand, within OHPLBJKB_00263 at 284.397 kb on - strand, within OHPLBJKB_00263 at 284.397 kb on - strand, within OHPLBJKB_00263 at 284.397 kb on - strand, within OHPLBJKB_00263 at 284.397 kb on - strand, within OHPLBJKB_00263 at 284.402 kb on + strand, within OHPLBJKB_00263 at 284.418 kb on + strand, within OHPLBJKB_00263 at 284.418 kb on + strand, within OHPLBJKB_00263 at 284.418 kb on + strand, within OHPLBJKB_00263 at 284.418 kb on + strand, within OHPLBJKB_00263 at 284.419 kb on - strand, within OHPLBJKB_00263 at 284.419 kb on - strand, within OHPLBJKB_00263 at 284.419 kb on - strand, within OHPLBJKB_00263 at 284.433 kb on - strand, within OHPLBJKB_00263 at 284.462 kb on + strand, within OHPLBJKB_00263 at 284.495 kb on + strand, within OHPLBJKB_00263 at 284.529 kb on + strand, within OHPLBJKB_00263 at 284.529 kb on + strand, within OHPLBJKB_00263 at 284.529 kb on + strand, within OHPLBJKB_00263 at 284.529 kb on + strand, within OHPLBJKB_00263 at 284.530 kb on - strand, within OHPLBJKB_00263 at 284.597 kb on + strand, within OHPLBJKB_00263 at 284.633 kb on - strand, within OHPLBJKB_00263 at 284.890 kb on + strand at 284.984 kb on + strand at 284.984 kb on + strand at 284.984 kb on + strand at 284.985 kb on - strand at 284.985 kb on - strand at 285.035 kb on + strand at 285.036 kb on - strand at 285.036 kb on - strand at 285.036 kb on - strand at 285.036 kb on - strand at 285.040 kb on + strand at 285.040 kb on + strand at 285.040 kb on + strand at 285.040 kb on + strand at 285.040 kb on + strand at 285.040 kb on + strand at 285.040 kb on + strand at 285.040 kb on + strand at 285.040 kb on + strand at 285.040 kb on + strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.041 kb on - strand at 285.042 kb on + strand at 285.042 kb on + strand at 285.042 kb on + strand at 285.046 kb on + strand at 285.046 kb on + strand at 285.047 kb on - strand at 285.116 kb on - strand at 285.158 kb on + strand at 285.159 kb on - strand at 285.183 kb on - strand at 285.246 kb on - strand, within OHPLBJKB_00264 at 285.283 kb on + strand, within OHPLBJKB_00264 at 285.284 kb on - strand, within OHPLBJKB_00264 at 285.286 kb on - strand, within OHPLBJKB_00264 at 285.348 kb on - strand, within OHPLBJKB_00264 at 285.381 kb on - strand, within OHPLBJKB_00264 at 285.439 kb on + strand, within OHPLBJKB_00264 at 285.445 kb on + strand, within OHPLBJKB_00264 at 285.447 kb on + strand, within OHPLBJKB_00264 at 285.522 kb on + strand, within OHPLBJKB_00264 at 285.542 kb on + strand, within OHPLBJKB_00264 at 285.542 kb on + strand, within OHPLBJKB_00264 at 285.542 kb on + strand, within OHPLBJKB_00264 at 285.717 kb on + strand, within OHPLBJKB_00264 at 285.717 kb on + strand, within OHPLBJKB_00264 at 285.717 kb on + strand, within OHPLBJKB_00264 at 285.717 kb on + strand, within OHPLBJKB_00264 at 285.717 kb on + strand, within OHPLBJKB_00264 at 285.718 kb on - strand, within OHPLBJKB_00264 at 285.718 kb on - strand, within OHPLBJKB_00264 at 285.718 kb on - strand, within OHPLBJKB_00264 at 285.718 kb on - strand, within OHPLBJKB_00264 at 285.720 kb on + strand, within OHPLBJKB_00264 at 285.720 kb on + strand, within OHPLBJKB_00264 at 285.720 kb on + strand, within OHPLBJKB_00264 at 285.721 kb on - strand, within OHPLBJKB_00264 at 285.777 kb on + strand, within OHPLBJKB_00264 at 285.777 kb on + strand, within OHPLBJKB_00264 at 285.778 kb on - strand, within OHPLBJKB_00264 at 285.778 kb on - strand, within OHPLBJKB_00264 at 285.805 kb on + strand, within OHPLBJKB_00264 at 285.806 kb on - strand, within OHPLBJKB_00264 at 285.873 kb on + strand, within OHPLBJKB_00264 at 286.100 kb on + strand at 286.128 kb on + strand at 286.128 kb on + strand at 286.151 kb on + strand at 286.151 kb on + strand at 286.151 kb on + strand at 286.152 kb on - strand at 286.162 kb on + strand at 286.162 kb on + strand at 286.162 kb on + strand at 286.162 kb on + strand at 286.163 kb on - strand at 286.163 kb on - strand at 286.163 kb on - strand at 286.164 kb on + strand at 286.164 kb on + strand at 286.165 kb on - strand at 286.165 kb on - strand at 286.165 kb on - strand at 286.170 kb on + strand at 286.171 kb on - strand at 286.256 kb on - strand at 286.303 kb on + strand at 286.303 kb on + strand at 286.303 kb on + strand at 286.303 kb on + strand at 286.303 kb on + strand at 286.303 kb on + strand at 286.304 kb on - strand at 286.304 kb on - strand at 286.304 kb on - strand at 286.304 kb on - strand at 286.304 kb on - strand at 286.304 kb on - strand at 286.509 kb on + strand, within OHPLBJKB_00265 at 286.512 kb on + strand, within OHPLBJKB_00265 at 286.512 kb on + strand, within OHPLBJKB_00265 at 286.512 kb on + strand, within OHPLBJKB_00265 at 286.513 kb on - strand, within OHPLBJKB_00265 at 286.513 kb on - strand, within OHPLBJKB_00265 at 286.513 kb on - strand, within OHPLBJKB_00265 at 286.513 kb on - strand, within OHPLBJKB_00265 at 286.553 kb on - strand, within OHPLBJKB_00265 at 286.575 kb on + strand, within OHPLBJKB_00265 at 286.597 kb on + strand, within OHPLBJKB_00265 at 286.724 kb on + strand, within OHPLBJKB_00265 at 286.724 kb on + strand, within OHPLBJKB_00265 at 286.725 kb on - strand, within OHPLBJKB_00265 at 286.725 kb on - strand, within OHPLBJKB_00265 at 286.725 kb on - strand, within OHPLBJKB_00265 at 286.725 kb on - strand, within OHPLBJKB_00265 at 286.725 kb on - strand, within OHPLBJKB_00265 at 286.798 kb on + strand at 286.798 kb on + strand at 286.799 kb on - strand at 286.799 kb on - strand at 286.799 kb on - strand at 286.802 kb on + strand at 286.802 kb on + strand at 286.802 kb on + strand at 286.809 kb on + strand at 286.809 kb on + strand at 286.810 kb on - strand at 286.810 kb on - strand at 286.836 kb on - strand at 286.848 kb on - strand at 286.848 kb on - strand at 286.862 kb on + strand at 286.862 kb on + strand at 286.863 kb on - strand at 286.863 kb on - strand at 286.879 kb on - strand at 286.879 kb on - strand at 287.022 kb on + strand, within OHPLBJKB_00266 at 287.022 kb on + strand, within OHPLBJKB_00266 at 287.023 kb on - strand, within OHPLBJKB_00266 at 287.023 kb on - strand, within OHPLBJKB_00266 at 287.023 kb on - strand, within OHPLBJKB_00266 at 287.039 kb on + strand, within OHPLBJKB_00266 at 287.039 kb on + strand, within OHPLBJKB_00266 at 287.039 kb on + strand, within OHPLBJKB_00266 at 287.040 kb on - strand, within OHPLBJKB_00266 at 287.040 kb on - strand, within OHPLBJKB_00266 at 287.040 kb on - strand, within OHPLBJKB_00266 at 287.040 kb on - strand, within OHPLBJKB_00266 at 287.040 kb on - strand, within OHPLBJKB_00266 at 287.040 kb on - strand, within OHPLBJKB_00266
Per-strain Table
Position Strand Gene LocusTag Fraction hib MOI10 remove 284,158 - +0.9 284,185 + -0.0 284,186 - -0.1 284,215 + +0.3 284,216 - +0.9 284,226 + +0.4 284,226 + -0.4 284,227 - -1.2 284,227 - +0.1 284,230 + -0.1 284,230 + +0.0 284,231 - -1.3 284,285 + +0.1 284,285 + +0.1 284,285 + -0.5 284,286 - -1.6 284,304 + OHPLBJKB_00263 0.12 +0.5 284,304 + OHPLBJKB_00263 0.12 +1.8 284,304 + OHPLBJKB_00263 0.12 -1.0 284,304 + OHPLBJKB_00263 0.12 +0.8 284,305 - OHPLBJKB_00263 0.12 +0.0 284,305 - OHPLBJKB_00263 0.12 +0.2 284,305 - OHPLBJKB_00263 0.12 +0.3 284,307 + OHPLBJKB_00263 0.12 -0.1 284,308 - OHPLBJKB_00263 0.13 -0.8 284,396 + OHPLBJKB_00263 0.25 +1.1 284,396 + OHPLBJKB_00263 0.25 +0.1 284,397 - OHPLBJKB_00263 0.25 -0.8 284,397 - OHPLBJKB_00263 0.25 -0.6 284,397 - OHPLBJKB_00263 0.25 -0.5 284,397 - OHPLBJKB_00263 0.25 +1.2 284,402 + OHPLBJKB_00263 0.26 -0.5 284,418 + OHPLBJKB_00263 0.28 -0.3 284,418 + OHPLBJKB_00263 0.28 -0.3 284,418 + OHPLBJKB_00263 0.28 +1.6 284,418 + OHPLBJKB_00263 0.28 -1.6 284,419 - OHPLBJKB_00263 0.29 +0.8 284,419 - OHPLBJKB_00263 0.29 +2.1 284,419 - OHPLBJKB_00263 0.29 -1.7 284,433 - OHPLBJKB_00263 0.31 -1.4 284,462 + OHPLBJKB_00263 0.35 +1.6 284,495 + OHPLBJKB_00263 0.40 -0.2 284,529 + OHPLBJKB_00263 0.44 +0.2 284,529 + OHPLBJKB_00263 0.44 -0.8 284,529 + OHPLBJKB_00263 0.44 -0.2 284,529 + OHPLBJKB_00263 0.44 +0.9 284,530 - OHPLBJKB_00263 0.45 -0.5 284,597 + OHPLBJKB_00263 0.54 -0.2 284,633 - OHPLBJKB_00263 0.59 +1.3 284,890 + -0.3 284,984 + -1.0 284,984 + -1.3 284,984 + -1.2 284,985 - -0.1 284,985 - +0.3 285,035 + +0.0 285,036 - -0.7 285,036 - +0.8 285,036 - -0.7 285,036 - +0.3 285,040 + -0.4 285,040 + +0.0 285,040 + +0.5 285,040 + -0.6 285,040 + +1.2 285,040 + -0.8 285,040 + -0.4 285,040 + -0.3 285,040 + +0.1 285,040 + +0.2 285,041 - -1.5 285,041 - -2.0 285,041 - +1.3 285,041 - -0.4 285,041 - -0.5 285,041 - +1.9 285,041 - -0.6 285,041 - -1.5 285,041 - -0.8 285,041 - -0.4 285,041 - +1.8 285,041 - +1.6 285,042 + -0.5 285,042 + -0.3 285,042 + -1.4 285,046 + -0.0 285,046 + -1.4 285,047 - -0.3 285,116 - -0.5 285,158 + +0.3 285,159 - -0.8 285,183 - -2.5 285,246 - OHPLBJKB_00264 0.11 -0.7 285,283 + OHPLBJKB_00264 0.14 -1.2 285,284 - OHPLBJKB_00264 0.15 -1.5 285,286 - OHPLBJKB_00264 0.15 -1.7 285,348 - OHPLBJKB_00264 0.21 -0.5 285,381 - OHPLBJKB_00264 0.24 -2.5 285,439 + OHPLBJKB_00264 0.30 -0.1 285,445 + OHPLBJKB_00264 0.31 -1.5 285,447 + OHPLBJKB_00264 0.31 -1.3 285,522 + OHPLBJKB_00264 0.38 -0.8 285,542 + OHPLBJKB_00264 0.40 +0.8 285,542 + OHPLBJKB_00264 0.40 +0.5 285,542 + OHPLBJKB_00264 0.40 +0.5 285,717 + OHPLBJKB_00264 0.58 -0.1 285,717 + OHPLBJKB_00264 0.58 -0.2 285,717 + OHPLBJKB_00264 0.58 -0.8 285,717 + OHPLBJKB_00264 0.58 -0.3 285,717 + OHPLBJKB_00264 0.58 -1.9 285,718 - OHPLBJKB_00264 0.58 +0.7 285,718 - OHPLBJKB_00264 0.58 -1.1 285,718 - OHPLBJKB_00264 0.58 +0.1 285,718 - OHPLBJKB_00264 0.58 -2.2 285,720 + OHPLBJKB_00264 0.58 -0.8 285,720 + OHPLBJKB_00264 0.58 -0.3 285,720 + OHPLBJKB_00264 0.58 +0.3 285,721 - OHPLBJKB_00264 0.58 -0.7 285,777 + OHPLBJKB_00264 0.64 -0.8 285,777 + OHPLBJKB_00264 0.64 -0.2 285,778 - OHPLBJKB_00264 0.64 +0.7 285,778 - OHPLBJKB_00264 0.64 -0.1 285,805 + OHPLBJKB_00264 0.67 +1.3 285,806 - OHPLBJKB_00264 0.67 -1.1 285,873 + OHPLBJKB_00264 0.74 -1.6 286,100 + -0.3 286,128 + +0.3 286,128 + -1.2 286,151 + -0.1 286,151 + +0.3 286,151 + +0.4 286,152 - +0.5 286,162 + -0.6 286,162 + -0.7 286,162 + +0.7 286,162 + -1.0 286,163 - +0.9 286,163 - +0.4 286,163 - +1.2 286,164 + -0.4 286,164 + -2.9 286,165 - +0.5 286,165 - +0.5 286,165 - +0.1 286,170 + -0.6 286,171 - +0.9 286,256 - +0.3 286,303 + -1.3 286,303 + +0.7 286,303 + +0.5 286,303 + -0.2 286,303 + +1.5 286,303 + -0.8 286,304 - +1.3 286,304 - -0.3 286,304 - -0.4 286,304 - -0.9 286,304 - +1.5 286,304 - -0.7 286,509 + OHPLBJKB_00265 0.45 -0.4 286,512 + OHPLBJKB_00265 0.45 -1.3 286,512 + OHPLBJKB_00265 0.45 -1.5 286,512 + OHPLBJKB_00265 0.45 -1.4 286,513 - OHPLBJKB_00265 0.45 -0.6 286,513 - OHPLBJKB_00265 0.45 -1.7 286,513 - OHPLBJKB_00265 0.45 +0.2 286,513 - OHPLBJKB_00265 0.45 +0.5 286,553 - OHPLBJKB_00265 0.53 -1.5 286,575 + OHPLBJKB_00265 0.57 -0.3 286,597 + OHPLBJKB_00265 0.61 -1.2 286,724 + OHPLBJKB_00265 0.85 -2.3 286,724 + OHPLBJKB_00265 0.85 +0.8 286,725 - OHPLBJKB_00265 0.86 +1.2 286,725 - OHPLBJKB_00265 0.86 +0.2 286,725 - OHPLBJKB_00265 0.86 -0.3 286,725 - OHPLBJKB_00265 0.86 -0.6 286,725 - OHPLBJKB_00265 0.86 +0.4 286,798 + -0.8 286,798 + -1.4 286,799 - -0.4 286,799 - -1.2 286,799 - -1.3 286,802 + +1.7 286,802 + -0.0 286,802 + -0.7 286,809 + +1.3 286,809 + +1.6 286,810 - -0.5 286,810 - +0.9 286,836 - -0.3 286,848 - -0.4 286,848 - -1.6 286,862 + -0.7 286,862 + +0.1 286,863 - -0.3 286,863 - +5.7 286,879 - -0.4 286,879 - -1.2 287,022 + OHPLBJKB_00266 0.16 -1.1 287,022 + OHPLBJKB_00266 0.16 -2.7 287,023 - OHPLBJKB_00266 0.16 +0.4 287,023 - OHPLBJKB_00266 0.16 -0.1 287,023 - OHPLBJKB_00266 0.16 -1.0 287,039 + OHPLBJKB_00266 0.18 +1.3 287,039 + OHPLBJKB_00266 0.18 +0.2 287,039 + OHPLBJKB_00266 0.18 -0.6 287,040 - OHPLBJKB_00266 0.18 +0.2 287,040 - OHPLBJKB_00266 0.18 -1.0 287,040 - OHPLBJKB_00266 0.18 -0.2 287,040 - OHPLBJKB_00266 0.18 -0.1 287,040 - OHPLBJKB_00266 0.18 -0.7 287,040 - OHPLBJKB_00266 0.18 -0.4
Or see this region's nucleotide sequence