Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00264

Experiment: hib MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00263 and OHPLBJKB_00264 are separated by 223 nucleotidesOHPLBJKB_00264 and OHPLBJKB_00265 are separated by 138 nucleotidesOHPLBJKB_00265 and OHPLBJKB_00266 are separated by 3 nucleotides OHPLBJKB_00263: OHPLBJKB_00263 - Quercetin 2,3-dioxygenase, at 284,220 to 284,915 _00263 OHPLBJKB_00264: OHPLBJKB_00264 - HTH-type transcriptional regulator GntR, at 285,139 to 286,134 _00264 OHPLBJKB_00265: OHPLBJKB_00265 - Thermoresistant gluconokinase, at 286,273 to 286,800 _00265 OHPLBJKB_00266: OHPLBJKB_00266 - Low-affinity gluconate transporter, at 286,804 to 288,144 _00266 Position (kb) 285 286 287Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 284.158 kb on - strandat 284.185 kb on + strandat 284.186 kb on - strandat 284.215 kb on + strandat 284.216 kb on - strandat 284.226 kb on + strandat 284.226 kb on + strandat 284.227 kb on - strandat 284.227 kb on - strandat 284.230 kb on + strandat 284.230 kb on + strandat 284.231 kb on - strandat 284.285 kb on + strandat 284.285 kb on + strandat 284.285 kb on + strandat 284.286 kb on - strandat 284.304 kb on + strand, within OHPLBJKB_00263at 284.304 kb on + strand, within OHPLBJKB_00263at 284.304 kb on + strand, within OHPLBJKB_00263at 284.304 kb on + strand, within OHPLBJKB_00263at 284.305 kb on - strand, within OHPLBJKB_00263at 284.305 kb on - strand, within OHPLBJKB_00263at 284.305 kb on - strand, within OHPLBJKB_00263at 284.307 kb on + strand, within OHPLBJKB_00263at 284.308 kb on - strand, within OHPLBJKB_00263at 284.396 kb on + strand, within OHPLBJKB_00263at 284.396 kb on + strand, within OHPLBJKB_00263at 284.397 kb on - strand, within OHPLBJKB_00263at 284.397 kb on - strand, within OHPLBJKB_00263at 284.397 kb on - strand, within OHPLBJKB_00263at 284.397 kb on - strand, within OHPLBJKB_00263at 284.402 kb on + strand, within OHPLBJKB_00263at 284.418 kb on + strand, within OHPLBJKB_00263at 284.418 kb on + strand, within OHPLBJKB_00263at 284.418 kb on + strand, within OHPLBJKB_00263at 284.418 kb on + strand, within OHPLBJKB_00263at 284.419 kb on - strand, within OHPLBJKB_00263at 284.419 kb on - strand, within OHPLBJKB_00263at 284.419 kb on - strand, within OHPLBJKB_00263at 284.433 kb on - strand, within OHPLBJKB_00263at 284.462 kb on + strand, within OHPLBJKB_00263at 284.495 kb on + strand, within OHPLBJKB_00263at 284.529 kb on + strand, within OHPLBJKB_00263at 284.529 kb on + strand, within OHPLBJKB_00263at 284.529 kb on + strand, within OHPLBJKB_00263at 284.529 kb on + strand, within OHPLBJKB_00263at 284.530 kb on - strand, within OHPLBJKB_00263at 284.597 kb on + strand, within OHPLBJKB_00263at 284.633 kb on - strand, within OHPLBJKB_00263at 284.890 kb on + strandat 284.984 kb on + strandat 284.984 kb on + strandat 284.984 kb on + strandat 284.985 kb on - strandat 284.985 kb on - strandat 285.035 kb on + strandat 285.036 kb on - strandat 285.036 kb on - strandat 285.036 kb on - strandat 285.036 kb on - strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.040 kb on + strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.041 kb on - strandat 285.042 kb on + strandat 285.042 kb on + strandat 285.042 kb on + strandat 285.046 kb on + strandat 285.046 kb on + strandat 285.047 kb on - strandat 285.116 kb on - strandat 285.158 kb on + strandat 285.159 kb on - strandat 285.183 kb on - strandat 285.246 kb on - strand, within OHPLBJKB_00264at 285.283 kb on + strand, within OHPLBJKB_00264at 285.284 kb on - strand, within OHPLBJKB_00264at 285.286 kb on - strand, within OHPLBJKB_00264at 285.348 kb on - strand, within OHPLBJKB_00264at 285.381 kb on - strand, within OHPLBJKB_00264at 285.439 kb on + strand, within OHPLBJKB_00264at 285.445 kb on + strand, within OHPLBJKB_00264at 285.447 kb on + strand, within OHPLBJKB_00264at 285.522 kb on + strand, within OHPLBJKB_00264at 285.542 kb on + strand, within OHPLBJKB_00264at 285.542 kb on + strand, within OHPLBJKB_00264at 285.542 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.717 kb on + strand, within OHPLBJKB_00264at 285.718 kb on - strand, within OHPLBJKB_00264at 285.718 kb on - strand, within OHPLBJKB_00264at 285.718 kb on - strand, within OHPLBJKB_00264at 285.718 kb on - strand, within OHPLBJKB_00264at 285.720 kb on + strand, within OHPLBJKB_00264at 285.720 kb on + strand, within OHPLBJKB_00264at 285.720 kb on + strand, within OHPLBJKB_00264at 285.721 kb on - strand, within OHPLBJKB_00264at 285.777 kb on + strand, within OHPLBJKB_00264at 285.777 kb on + strand, within OHPLBJKB_00264at 285.778 kb on - strand, within OHPLBJKB_00264at 285.778 kb on - strand, within OHPLBJKB_00264at 285.805 kb on + strand, within OHPLBJKB_00264at 285.806 kb on - strand, within OHPLBJKB_00264at 285.873 kb on + strand, within OHPLBJKB_00264at 286.100 kb on + strandat 286.128 kb on + strandat 286.128 kb on + strandat 286.151 kb on + strandat 286.151 kb on + strandat 286.151 kb on + strandat 286.152 kb on - strandat 286.162 kb on + strandat 286.162 kb on + strandat 286.162 kb on + strandat 286.162 kb on + strandat 286.163 kb on - strandat 286.163 kb on - strandat 286.163 kb on - strandat 286.164 kb on + strandat 286.164 kb on + strandat 286.165 kb on - strandat 286.165 kb on - strandat 286.165 kb on - strandat 286.170 kb on + strandat 286.171 kb on - strandat 286.256 kb on - strandat 286.303 kb on + strandat 286.303 kb on + strandat 286.303 kb on + strandat 286.303 kb on + strandat 286.303 kb on + strandat 286.303 kb on + strandat 286.304 kb on - strandat 286.304 kb on - strandat 286.304 kb on - strandat 286.304 kb on - strandat 286.304 kb on - strandat 286.304 kb on - strandat 286.509 kb on + strand, within OHPLBJKB_00265at 286.512 kb on + strand, within OHPLBJKB_00265at 286.512 kb on + strand, within OHPLBJKB_00265at 286.512 kb on + strand, within OHPLBJKB_00265at 286.513 kb on - strand, within OHPLBJKB_00265at 286.513 kb on - strand, within OHPLBJKB_00265at 286.513 kb on - strand, within OHPLBJKB_00265at 286.513 kb on - strand, within OHPLBJKB_00265at 286.553 kb on - strand, within OHPLBJKB_00265at 286.575 kb on + strand, within OHPLBJKB_00265at 286.597 kb on + strand, within OHPLBJKB_00265at 286.724 kb on + strand, within OHPLBJKB_00265at 286.724 kb on + strand, within OHPLBJKB_00265at 286.725 kb on - strand, within OHPLBJKB_00265at 286.725 kb on - strand, within OHPLBJKB_00265at 286.725 kb on - strand, within OHPLBJKB_00265at 286.725 kb on - strand, within OHPLBJKB_00265at 286.725 kb on - strand, within OHPLBJKB_00265at 286.798 kb on + strandat 286.798 kb on + strandat 286.799 kb on - strandat 286.799 kb on - strandat 286.799 kb on - strandat 286.802 kb on + strandat 286.802 kb on + strandat 286.802 kb on + strandat 286.809 kb on + strandat 286.809 kb on + strandat 286.810 kb on - strandat 286.810 kb on - strandat 286.836 kb on - strandat 286.848 kb on - strandat 286.848 kb on - strandat 286.862 kb on + strandat 286.862 kb on + strandat 286.863 kb on - strandat 286.863 kb on - strandat 286.879 kb on - strandat 286.879 kb on - strandat 287.022 kb on + strand, within OHPLBJKB_00266at 287.022 kb on + strand, within OHPLBJKB_00266at 287.023 kb on - strand, within OHPLBJKB_00266at 287.023 kb on - strand, within OHPLBJKB_00266at 287.023 kb on - strand, within OHPLBJKB_00266at 287.039 kb on + strand, within OHPLBJKB_00266at 287.039 kb on + strand, within OHPLBJKB_00266at 287.039 kb on + strand, within OHPLBJKB_00266at 287.040 kb on - strand, within OHPLBJKB_00266at 287.040 kb on - strand, within OHPLBJKB_00266at 287.040 kb on - strand, within OHPLBJKB_00266at 287.040 kb on - strand, within OHPLBJKB_00266at 287.040 kb on - strand, within OHPLBJKB_00266at 287.040 kb on - strand, within OHPLBJKB_00266

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI10
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284,158 - +0.9
284,185 + -0.0
284,186 - -0.1
284,215 + +0.3
284,216 - +0.9
284,226 + +0.4
284,226 + -0.4
284,227 - -1.2
284,227 - +0.1
284,230 + -0.1
284,230 + +0.0
284,231 - -1.3
284,285 + +0.1
284,285 + +0.1
284,285 + -0.5
284,286 - -1.6
284,304 + OHPLBJKB_00263 0.12 +0.5
284,304 + OHPLBJKB_00263 0.12 +1.8
284,304 + OHPLBJKB_00263 0.12 -1.0
284,304 + OHPLBJKB_00263 0.12 +0.8
284,305 - OHPLBJKB_00263 0.12 +0.0
284,305 - OHPLBJKB_00263 0.12 +0.2
284,305 - OHPLBJKB_00263 0.12 +0.3
284,307 + OHPLBJKB_00263 0.12 -0.1
284,308 - OHPLBJKB_00263 0.13 -0.8
284,396 + OHPLBJKB_00263 0.25 +1.1
284,396 + OHPLBJKB_00263 0.25 +0.1
284,397 - OHPLBJKB_00263 0.25 -0.8
284,397 - OHPLBJKB_00263 0.25 -0.6
284,397 - OHPLBJKB_00263 0.25 -0.5
284,397 - OHPLBJKB_00263 0.25 +1.2
284,402 + OHPLBJKB_00263 0.26 -0.5
284,418 + OHPLBJKB_00263 0.28 -0.3
284,418 + OHPLBJKB_00263 0.28 -0.3
284,418 + OHPLBJKB_00263 0.28 +1.6
284,418 + OHPLBJKB_00263 0.28 -1.6
284,419 - OHPLBJKB_00263 0.29 +0.8
284,419 - OHPLBJKB_00263 0.29 +2.1
284,419 - OHPLBJKB_00263 0.29 -1.7
284,433 - OHPLBJKB_00263 0.31 -1.4
284,462 + OHPLBJKB_00263 0.35 +1.6
284,495 + OHPLBJKB_00263 0.40 -0.2
284,529 + OHPLBJKB_00263 0.44 +0.2
284,529 + OHPLBJKB_00263 0.44 -0.8
284,529 + OHPLBJKB_00263 0.44 -0.2
284,529 + OHPLBJKB_00263 0.44 +0.9
284,530 - OHPLBJKB_00263 0.45 -0.5
284,597 + OHPLBJKB_00263 0.54 -0.2
284,633 - OHPLBJKB_00263 0.59 +1.3
284,890 + -0.3
284,984 + -1.0
284,984 + -1.3
284,984 + -1.2
284,985 - -0.1
284,985 - +0.3
285,035 + +0.0
285,036 - -0.7
285,036 - +0.8
285,036 - -0.7
285,036 - +0.3
285,040 + -0.4
285,040 + +0.0
285,040 + +0.5
285,040 + -0.6
285,040 + +1.2
285,040 + -0.8
285,040 + -0.4
285,040 + -0.3
285,040 + +0.1
285,040 + +0.2
285,041 - -1.5
285,041 - -2.0
285,041 - +1.3
285,041 - -0.4
285,041 - -0.5
285,041 - +1.9
285,041 - -0.6
285,041 - -1.5
285,041 - -0.8
285,041 - -0.4
285,041 - +1.8
285,041 - +1.6
285,042 + -0.5
285,042 + -0.3
285,042 + -1.4
285,046 + -0.0
285,046 + -1.4
285,047 - -0.3
285,116 - -0.5
285,158 + +0.3
285,159 - -0.8
285,183 - -2.5
285,246 - OHPLBJKB_00264 0.11 -0.7
285,283 + OHPLBJKB_00264 0.14 -1.2
285,284 - OHPLBJKB_00264 0.15 -1.5
285,286 - OHPLBJKB_00264 0.15 -1.7
285,348 - OHPLBJKB_00264 0.21 -0.5
285,381 - OHPLBJKB_00264 0.24 -2.5
285,439 + OHPLBJKB_00264 0.30 -0.1
285,445 + OHPLBJKB_00264 0.31 -1.5
285,447 + OHPLBJKB_00264 0.31 -1.3
285,522 + OHPLBJKB_00264 0.38 -0.8
285,542 + OHPLBJKB_00264 0.40 +0.8
285,542 + OHPLBJKB_00264 0.40 +0.5
285,542 + OHPLBJKB_00264 0.40 +0.5
285,717 + OHPLBJKB_00264 0.58 -0.1
285,717 + OHPLBJKB_00264 0.58 -0.2
285,717 + OHPLBJKB_00264 0.58 -0.8
285,717 + OHPLBJKB_00264 0.58 -0.3
285,717 + OHPLBJKB_00264 0.58 -1.9
285,718 - OHPLBJKB_00264 0.58 +0.7
285,718 - OHPLBJKB_00264 0.58 -1.1
285,718 - OHPLBJKB_00264 0.58 +0.1
285,718 - OHPLBJKB_00264 0.58 -2.2
285,720 + OHPLBJKB_00264 0.58 -0.8
285,720 + OHPLBJKB_00264 0.58 -0.3
285,720 + OHPLBJKB_00264 0.58 +0.3
285,721 - OHPLBJKB_00264 0.58 -0.7
285,777 + OHPLBJKB_00264 0.64 -0.8
285,777 + OHPLBJKB_00264 0.64 -0.2
285,778 - OHPLBJKB_00264 0.64 +0.7
285,778 - OHPLBJKB_00264 0.64 -0.1
285,805 + OHPLBJKB_00264 0.67 +1.3
285,806 - OHPLBJKB_00264 0.67 -1.1
285,873 + OHPLBJKB_00264 0.74 -1.6
286,100 + -0.3
286,128 + +0.3
286,128 + -1.2
286,151 + -0.1
286,151 + +0.3
286,151 + +0.4
286,152 - +0.5
286,162 + -0.6
286,162 + -0.7
286,162 + +0.7
286,162 + -1.0
286,163 - +0.9
286,163 - +0.4
286,163 - +1.2
286,164 + -0.4
286,164 + -2.9
286,165 - +0.5
286,165 - +0.5
286,165 - +0.1
286,170 + -0.6
286,171 - +0.9
286,256 - +0.3
286,303 + -1.3
286,303 + +0.7
286,303 + +0.5
286,303 + -0.2
286,303 + +1.5
286,303 + -0.8
286,304 - +1.3
286,304 - -0.3
286,304 - -0.4
286,304 - -0.9
286,304 - +1.5
286,304 - -0.7
286,509 + OHPLBJKB_00265 0.45 -0.4
286,512 + OHPLBJKB_00265 0.45 -1.3
286,512 + OHPLBJKB_00265 0.45 -1.5
286,512 + OHPLBJKB_00265 0.45 -1.4
286,513 - OHPLBJKB_00265 0.45 -0.6
286,513 - OHPLBJKB_00265 0.45 -1.7
286,513 - OHPLBJKB_00265 0.45 +0.2
286,513 - OHPLBJKB_00265 0.45 +0.5
286,553 - OHPLBJKB_00265 0.53 -1.5
286,575 + OHPLBJKB_00265 0.57 -0.3
286,597 + OHPLBJKB_00265 0.61 -1.2
286,724 + OHPLBJKB_00265 0.85 -2.3
286,724 + OHPLBJKB_00265 0.85 +0.8
286,725 - OHPLBJKB_00265 0.86 +1.2
286,725 - OHPLBJKB_00265 0.86 +0.2
286,725 - OHPLBJKB_00265 0.86 -0.3
286,725 - OHPLBJKB_00265 0.86 -0.6
286,725 - OHPLBJKB_00265 0.86 +0.4
286,798 + -0.8
286,798 + -1.4
286,799 - -0.4
286,799 - -1.2
286,799 - -1.3
286,802 + +1.7
286,802 + -0.0
286,802 + -0.7
286,809 + +1.3
286,809 + +1.6
286,810 - -0.5
286,810 - +0.9
286,836 - -0.3
286,848 - -0.4
286,848 - -1.6
286,862 + -0.7
286,862 + +0.1
286,863 - -0.3
286,863 - +5.7
286,879 - -0.4
286,879 - -1.2
287,022 + OHPLBJKB_00266 0.16 -1.1
287,022 + OHPLBJKB_00266 0.16 -2.7
287,023 - OHPLBJKB_00266 0.16 +0.4
287,023 - OHPLBJKB_00266 0.16 -0.1
287,023 - OHPLBJKB_00266 0.16 -1.0
287,039 + OHPLBJKB_00266 0.18 +1.3
287,039 + OHPLBJKB_00266 0.18 +0.2
287,039 + OHPLBJKB_00266 0.18 -0.6
287,040 - OHPLBJKB_00266 0.18 +0.2
287,040 - OHPLBJKB_00266 0.18 -1.0
287,040 - OHPLBJKB_00266 0.18 -0.2
287,040 - OHPLBJKB_00266 0.18 -0.1
287,040 - OHPLBJKB_00266 0.18 -0.7
287,040 - OHPLBJKB_00266 0.18 -0.4

Or see this region's nucleotide sequence