Experiment: hib MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00041 and OHPLBJKB_00042 are separated by 110 nucleotides OHPLBJKB_00042 and OHPLBJKB_00043 are separated by 636 nucleotides
OHPLBJKB_00041: OHPLBJKB_00041 - putative inner membrane transporter YicL, at 42,147 to 43,070
_00041
OHPLBJKB_00042: OHPLBJKB_00042 - Sugar efflux transporter C, at 43,181 to 44,365
_00042
OHPLBJKB_00043: OHPLBJKB_00043 - tRNA-Sec, at 45,002 to 45,096
_00043
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 42.300 kb on + strand, within OHPLBJKB_00041 at 42.300 kb on + strand, within OHPLBJKB_00041 at 42.301 kb on - strand, within OHPLBJKB_00041 at 42.301 kb on - strand, within OHPLBJKB_00041 at 42.345 kb on + strand, within OHPLBJKB_00041 at 42.346 kb on - strand, within OHPLBJKB_00041 at 42.365 kb on - strand, within OHPLBJKB_00041 at 42.365 kb on - strand, within OHPLBJKB_00041 at 42.372 kb on - strand, within OHPLBJKB_00041 at 42.386 kb on + strand, within OHPLBJKB_00041 at 42.386 kb on + strand, within OHPLBJKB_00041 at 42.387 kb on - strand, within OHPLBJKB_00041 at 42.387 kb on - strand, within OHPLBJKB_00041 at 42.460 kb on + strand, within OHPLBJKB_00041 at 42.494 kb on + strand, within OHPLBJKB_00041 at 42.494 kb on + strand, within OHPLBJKB_00041 at 42.495 kb on - strand, within OHPLBJKB_00041 at 42.547 kb on + strand, within OHPLBJKB_00041 at 42.548 kb on - strand, within OHPLBJKB_00041 at 42.556 kb on + strand, within OHPLBJKB_00041 at 42.556 kb on + strand, within OHPLBJKB_00041 at 42.556 kb on + strand, within OHPLBJKB_00041 at 42.556 kb on + strand, within OHPLBJKB_00041 at 42.556 kb on + strand, within OHPLBJKB_00041 at 42.556 kb on + strand, within OHPLBJKB_00041 at 42.707 kb on + strand, within OHPLBJKB_00041 at 42.708 kb on - strand, within OHPLBJKB_00041 at 42.813 kb on + strand, within OHPLBJKB_00041 at 42.813 kb on + strand, within OHPLBJKB_00041 at 42.814 kb on - strand, within OHPLBJKB_00041 at 42.852 kb on - strand, within OHPLBJKB_00041 at 42.863 kb on + strand, within OHPLBJKB_00041 at 42.872 kb on + strand, within OHPLBJKB_00041 at 42.873 kb on - strand, within OHPLBJKB_00041 at 42.875 kb on + strand, within OHPLBJKB_00041 at 42.876 kb on - strand, within OHPLBJKB_00041 at 42.878 kb on + strand, within OHPLBJKB_00041 at 42.918 kb on + strand, within OHPLBJKB_00041 at 42.951 kb on - strand, within OHPLBJKB_00041 at 42.991 kb on + strand at 42.991 kb on + strand at 42.991 kb on + strand at 42.991 kb on + strand at 42.991 kb on + strand at 42.992 kb on - strand at 42.992 kb on - strand at 42.992 kb on - strand at 42.992 kb on - strand at 43.100 kb on - strand at 43.100 kb on - strand at 43.100 kb on - strand at 43.100 kb on - strand at 43.100 kb on - strand at 43.100 kb on - strand at 43.100 kb on - strand at 43.103 kb on + strand at 43.103 kb on + strand at 43.103 kb on + strand at 43.104 kb on - strand at 43.104 kb on - strand at 43.104 kb on - strand at 43.104 kb on - strand at 43.195 kb on + strand at 43.220 kb on - strand at 43.257 kb on + strand at 43.257 kb on + strand at 43.277 kb on - strand at 43.277 kb on - strand at 43.322 kb on - strand, within OHPLBJKB_00042 at 43.322 kb on - strand, within OHPLBJKB_00042 at 43.330 kb on - strand, within OHPLBJKB_00042 at 43.331 kb on + strand, within OHPLBJKB_00042 at 43.332 kb on - strand, within OHPLBJKB_00042 at 43.332 kb on - strand, within OHPLBJKB_00042 at 43.332 kb on - strand, within OHPLBJKB_00042 at 43.332 kb on - strand, within OHPLBJKB_00042 at 43.403 kb on - strand, within OHPLBJKB_00042 at 43.499 kb on - strand, within OHPLBJKB_00042 at 43.540 kb on - strand, within OHPLBJKB_00042 at 43.540 kb on - strand, within OHPLBJKB_00042 at 43.542 kb on + strand, within OHPLBJKB_00042 at 43.543 kb on - strand, within OHPLBJKB_00042 at 43.543 kb on - strand, within OHPLBJKB_00042 at 43.543 kb on - strand, within OHPLBJKB_00042 at 43.636 kb on + strand, within OHPLBJKB_00042 at 43.648 kb on + strand, within OHPLBJKB_00042 at 43.648 kb on + strand, within OHPLBJKB_00042 at 43.653 kb on - strand, within OHPLBJKB_00042 at 43.660 kb on - strand, within OHPLBJKB_00042 at 43.667 kb on - strand, within OHPLBJKB_00042 at 43.769 kb on - strand, within OHPLBJKB_00042 at 43.769 kb on - strand, within OHPLBJKB_00042 at 43.769 kb on - strand, within OHPLBJKB_00042 at 43.803 kb on - strand, within OHPLBJKB_00042 at 43.842 kb on + strand, within OHPLBJKB_00042 at 43.842 kb on + strand, within OHPLBJKB_00042 at 43.843 kb on - strand, within OHPLBJKB_00042 at 43.843 kb on - strand, within OHPLBJKB_00042 at 43.843 kb on - strand, within OHPLBJKB_00042 at 43.852 kb on + strand, within OHPLBJKB_00042 at 43.853 kb on - strand, within OHPLBJKB_00042 at 43.853 kb on - strand, within OHPLBJKB_00042 at 43.925 kb on + strand, within OHPLBJKB_00042 at 44.031 kb on - strand, within OHPLBJKB_00042 at 44.055 kb on + strand, within OHPLBJKB_00042 at 44.056 kb on - strand, within OHPLBJKB_00042 at 44.217 kb on - strand, within OHPLBJKB_00042 at 44.249 kb on + strand at 44.250 kb on - strand at 44.251 kb on + strand at 44.251 kb on + strand at 44.261 kb on - strand at 44.409 kb on - strand at 44.491 kb on - strand at 44.616 kb on + strand at 44.703 kb on - strand at 44.818 kb on + strand at 44.905 kb on - strand at 44.905 kb on - strand at 44.966 kb on - strand at 44.968 kb on + strand at 44.968 kb on + strand at 44.968 kb on + strand at 44.968 kb on + strand at 44.968 kb on + strand at 44.968 kb on + strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 44.969 kb on - strand at 45.110 kb on + strand at 45.110 kb on + strand at 45.111 kb on - strand at 45.111 kb on - strand at 45.111 kb on - strand at 45.111 kb on - strand at 45.130 kb on + strand at 45.132 kb on + strand at 45.132 kb on + strand at 45.132 kb on + strand at 45.132 kb on + strand at 45.132 kb on + strand at 45.132 kb on + strand at 45.133 kb on - strand at 45.133 kb on - strand at 45.133 kb on - strand at 45.133 kb on - strand at 45.133 kb on - strand at 45.133 kb on - strand at 45.133 kb on - strand at 45.133 kb on - strand at 45.133 kb on - strand at 45.133 kb on - strand at 45.136 kb on + strand at 45.136 kb on + strand at 45.136 kb on + strand at 45.137 kb on - strand at 45.137 kb on - strand at 45.137 kb on - strand at 45.152 kb on + strand at 45.152 kb on + strand at 45.152 kb on + strand at 45.153 kb on - strand at 45.153 kb on - strand at 45.180 kb on + strand at 45.181 kb on - strand at 45.183 kb on + strand at 45.194 kb on + strand at 45.213 kb on + strand at 45.213 kb on + strand at 45.214 kb on - strand at 45.244 kb on + strand at 45.246 kb on + strand at 45.277 kb on + strand at 45.291 kb on + strand at 45.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction hib MOI10 remove 42,300 + OHPLBJKB_00041 0.17 +1.4 42,300 + OHPLBJKB_00041 0.17 +0.1 42,301 - OHPLBJKB_00041 0.17 -1.4 42,301 - OHPLBJKB_00041 0.17 +2.0 42,345 + OHPLBJKB_00041 0.21 -1.5 42,346 - OHPLBJKB_00041 0.22 -0.8 42,365 - OHPLBJKB_00041 0.24 +0.7 42,365 - OHPLBJKB_00041 0.24 -0.5 42,372 - OHPLBJKB_00041 0.24 -1.9 42,386 + OHPLBJKB_00041 0.26 +0.5 42,386 + OHPLBJKB_00041 0.26 +0.3 42,387 - OHPLBJKB_00041 0.26 -0.3 42,387 - OHPLBJKB_00041 0.26 -0.0 42,460 + OHPLBJKB_00041 0.34 -1.3 42,494 + OHPLBJKB_00041 0.38 -0.1 42,494 + OHPLBJKB_00041 0.38 -1.9 42,495 - OHPLBJKB_00041 0.38 -0.7 42,547 + OHPLBJKB_00041 0.43 +0.8 42,548 - OHPLBJKB_00041 0.43 +1.8 42,556 + OHPLBJKB_00041 0.44 -0.8 42,556 + OHPLBJKB_00041 0.44 +0.5 42,556 + OHPLBJKB_00041 0.44 +0.1 42,556 + OHPLBJKB_00041 0.44 -0.5 42,556 + OHPLBJKB_00041 0.44 +0.3 42,556 + OHPLBJKB_00041 0.44 +0.3 42,707 + OHPLBJKB_00041 0.61 +0.1 42,708 - OHPLBJKB_00041 0.61 -0.7 42,813 + OHPLBJKB_00041 0.72 +0.6 42,813 + OHPLBJKB_00041 0.72 +2.3 42,814 - OHPLBJKB_00041 0.72 -1.2 42,852 - OHPLBJKB_00041 0.76 +0.7 42,863 + OHPLBJKB_00041 0.77 -2.5 42,872 + OHPLBJKB_00041 0.78 -0.3 42,873 - OHPLBJKB_00041 0.79 +1.3 42,875 + OHPLBJKB_00041 0.79 -1.3 42,876 - OHPLBJKB_00041 0.79 -0.5 42,878 + OHPLBJKB_00041 0.79 +0.1 42,918 + OHPLBJKB_00041 0.83 -0.7 42,951 - OHPLBJKB_00041 0.87 +1.0 42,991 + +2.4 42,991 + -0.3 42,991 + -1.3 42,991 + -0.5 42,991 + -1.5 42,992 - +1.0 42,992 - +0.2 42,992 - +0.1 42,992 - +0.3 43,100 - -0.8 43,100 - +0.2 43,100 - +0.1 43,100 - -0.7 43,100 - -0.7 43,100 - +0.1 43,100 - -0.4 43,103 + +0.4 43,103 + -0.2 43,103 + +0.5 43,104 - +1.0 43,104 - +0.2 43,104 - +0.5 43,104 - +0.6 43,195 + +0.3 43,220 - +0.7 43,257 + -1.8 43,257 + +0.5 43,277 - +1.4 43,277 - +0.7 43,322 - OHPLBJKB_00042 0.12 -0.8 43,322 - OHPLBJKB_00042 0.12 +0.3 43,330 - OHPLBJKB_00042 0.13 +1.0 43,331 + OHPLBJKB_00042 0.13 +1.2 43,332 - OHPLBJKB_00042 0.13 -0.5 43,332 - OHPLBJKB_00042 0.13 -0.2 43,332 - OHPLBJKB_00042 0.13 +1.3 43,332 - OHPLBJKB_00042 0.13 -2.8 43,403 - OHPLBJKB_00042 0.19 -0.1 43,499 - OHPLBJKB_00042 0.27 -0.0 43,540 - OHPLBJKB_00042 0.30 +0.3 43,540 - OHPLBJKB_00042 0.30 +0.1 43,542 + OHPLBJKB_00042 0.30 -3.2 43,543 - OHPLBJKB_00042 0.31 +0.6 43,543 - OHPLBJKB_00042 0.31 -2.6 43,543 - OHPLBJKB_00042 0.31 +0.4 43,636 + OHPLBJKB_00042 0.38 -1.2 43,648 + OHPLBJKB_00042 0.39 -1.0 43,648 + OHPLBJKB_00042 0.39 +1.1 43,653 - OHPLBJKB_00042 0.40 +0.1 43,660 - OHPLBJKB_00042 0.40 +0.7 43,667 - OHPLBJKB_00042 0.41 +0.8 43,769 - OHPLBJKB_00042 0.50 +0.2 43,769 - OHPLBJKB_00042 0.50 +0.1 43,769 - OHPLBJKB_00042 0.50 -1.1 43,803 - OHPLBJKB_00042 0.52 +0.0 43,842 + OHPLBJKB_00042 0.56 -0.7 43,842 + OHPLBJKB_00042 0.56 -1.8 43,843 - OHPLBJKB_00042 0.56 -1.5 43,843 - OHPLBJKB_00042 0.56 +0.9 43,843 - OHPLBJKB_00042 0.56 -1.7 43,852 + OHPLBJKB_00042 0.57 +1.7 43,853 - OHPLBJKB_00042 0.57 +2.0 43,853 - OHPLBJKB_00042 0.57 -0.5 43,925 + OHPLBJKB_00042 0.63 -0.6 44,031 - OHPLBJKB_00042 0.72 -0.5 44,055 + OHPLBJKB_00042 0.74 -0.3 44,056 - OHPLBJKB_00042 0.74 +0.4 44,217 - OHPLBJKB_00042 0.87 -0.2 44,249 + -0.6 44,250 - +1.9 44,251 + +2.1 44,251 + +0.2 44,261 - -0.1 44,409 - -0.4 44,491 - +2.8 44,616 + -0.2 44,703 - +1.6 44,818 + -1.0 44,905 - -0.4 44,905 - -0.3 44,966 - -1.8 44,968 + -0.8 44,968 + -0.2 44,968 + -2.2 44,968 + -0.0 44,968 + +3.2 44,968 + +0.1 44,969 - +0.6 44,969 - +0.2 44,969 - -1.4 44,969 - +0.1 44,969 - -1.1 44,969 - -1.2 44,969 - +1.2 44,969 - +0.8 44,969 - +2.8 44,969 - -1.1 44,969 - +0.7 44,969 - -1.0 44,969 - +0.0 45,110 + +0.4 45,110 + -0.4 45,111 - +0.2 45,111 - +1.2 45,111 - +0.8 45,111 - -1.6 45,130 + -2.1 45,132 + -0.6 45,132 + -0.2 45,132 + +0.7 45,132 + +0.4 45,132 + -1.2 45,132 + -1.0 45,133 - -0.1 45,133 - +0.2 45,133 - -2.6 45,133 - +0.5 45,133 - -0.7 45,133 - +0.7 45,133 - +1.9 45,133 - +0.2 45,133 - -0.4 45,133 - -0.6 45,136 + +1.2 45,136 + -0.5 45,136 + -1.0 45,137 - -0.6 45,137 - +1.8 45,137 - +0.1 45,152 + +0.2 45,152 + +0.6 45,152 + +0.4 45,153 - -1.4 45,153 - -0.5 45,180 + -1.6 45,181 - +2.7 45,183 + +1.4 45,194 + +0.3 45,213 + +0.4 45,213 + +0.7 45,214 - +1.3 45,244 + +2.4 45,246 + -0.7 45,277 + -0.3 45,291 + +1.0 45,300 - -2.0
Or see this region's nucleotide sequence