Strain Fitness in Escherichia fergusonii Becca around EFB2_04608

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,845,990	+		EFB2_04607	0.37	-0.5
4,845,991	-		EFB2_04607	0.37	-3.3
4,846,078	+		EFB2_04607	0.43	+0.2
4,846,078	+		EFB2_04607	0.43	+2.0
4,846,078	+		EFB2_04607	0.43	+1.0
4,846,078	+		EFB2_04607	0.43	+0.6
4,846,079	-		EFB2_04607	0.43	-0.8
4,846,079	-		EFB2_04607	0.43	-1.8
4,846,079	-		EFB2_04607	0.43	+1.1
4,846,095	-		EFB2_04607	0.44	+0.2
4,846,191	+		EFB2_04607	0.51	+1.0
4,846,191	+		EFB2_04607	0.51	+0.3
4,846,191	+		EFB2_04607	0.51	-1.3
4,846,191	+		EFB2_04607	0.51	-2.9
4,846,191	+		EFB2_04607	0.51	-3.1
4,846,191	+		EFB2_04607	0.51	-0.4
4,846,191	+		EFB2_04607	0.51	-1.8
4,846,191	+		EFB2_04607	0.51	+1.1
4,846,191	+		EFB2_04607	0.51	-0.3
4,846,191	+		EFB2_04607	0.51	+0.1
4,846,191	+		EFB2_04607	0.51	-0.2
4,846,191	+		EFB2_04607	0.51	+0.7
4,846,192	-		EFB2_04607	0.51	-0.8
4,846,192	-		EFB2_04607	0.51	+0.8
4,846,192	-		EFB2_04607	0.51	-1.9
4,846,192	-		EFB2_04607	0.51	-0.2
4,846,192	-		EFB2_04607	0.51	-0.3
4,846,192	-		EFB2_04607	0.51	+0.1
4,846,192	-		EFB2_04607	0.51	+1.6
4,846,192	-		EFB2_04607	0.51	+0.5
4,846,210	+		EFB2_04607	0.53	-1.3
4,846,275	-		EFB2_04607	0.57	-1.0
4,846,275	-		EFB2_04607	0.57	-0.4
4,846,275	-		EFB2_04607	0.57	+1.8
4,846,275	-		EFB2_04607	0.57	-1.1
4,846,319	+		EFB2_04607	0.60	+1.9
4,846,320	-		EFB2_04607	0.61	-2.7
4,846,320	-		EFB2_04607	0.61	-0.8
4,846,320	-		EFB2_04607	0.61	-1.5
4,846,320	-		EFB2_04607	0.61	-2.0
4,846,320	-		EFB2_04607	0.61	-0.2
4,846,320	-		EFB2_04607	0.61	+0.3
4,846,320	-		EFB2_04607	0.61	+0.3
4,846,363	+		EFB2_04607	0.64	-0.2
4,846,363	+		EFB2_04607	0.64	+0.5
4,846,363	+		EFB2_04607	0.64	+0.4
4,846,363	+		EFB2_04607	0.64	+0.7
4,846,363	+		EFB2_04607	0.64	+0.1
4,846,363	+		EFB2_04607	0.64	-0.7
4,846,364	-		EFB2_04607	0.64	-0.7
4,846,364	-		EFB2_04607	0.64	+0.8
4,846,364	-		EFB2_04607	0.64	-2.0
4,846,364	-		EFB2_04607	0.64	-2.9
4,846,373	+		EFB2_04607	0.64	-1.3
4,846,373	+		EFB2_04607	0.64	+0.3
4,846,373	+		EFB2_04607	0.64	+0.3
4,846,374	-		EFB2_04607	0.64	-0.3
4,846,374	-		EFB2_04607	0.64	+0.0
4,846,491	+		EFB2_04607	0.73	+0.3
4,846,491	+		EFB2_04607	0.73	-2.1
4,846,491	+		EFB2_04607	0.73	-0.1
4,846,491	+		EFB2_04607	0.73	-1.6
4,846,491	+		EFB2_04607	0.73	-1.6
4,846,491	+		EFB2_04607	0.73	-0.9
4,846,491	+		EFB2_04607	0.73	-0.7
4,846,491	+		EFB2_04607	0.73	-0.4
4,846,491	+		EFB2_04607	0.73	+0.2
4,846,491	+		EFB2_04607	0.73	+1.3
4,846,491	+		EFB2_04607	0.73	+1.0
4,846,491	+		EFB2_04607	0.73	+2.5
4,846,491	+		EFB2_04607	0.73	+0.3
4,846,491	+		EFB2_04607	0.73	+0.3
4,846,491	+		EFB2_04607	0.73	-0.3
4,846,491	+		EFB2_04607	0.73	-0.7
4,846,492	-		EFB2_04607	0.73	-1.1
4,846,492	-		EFB2_04607	0.73	-0.2
4,846,492	-		EFB2_04607	0.73	-0.6
4,846,492	-		EFB2_04607	0.73	+0.4
4,846,492	-		EFB2_04607	0.73	-0.9
4,846,492	-		EFB2_04607	0.73	-0.4
4,846,492	-		EFB2_04607	0.73	-1.6
4,846,492	-		EFB2_04607	0.73	+0.4
4,846,492	-		EFB2_04607	0.73	-0.7
4,846,492	-		EFB2_04607	0.73	+0.6
4,846,492	-		EFB2_04607	0.73	+0.5
4,846,492	-		EFB2_04607	0.73	-2.1
4,846,492	-		EFB2_04607	0.73	-2.0
4,846,492	-		EFB2_04607	0.73	+0.2
4,846,492	-		EFB2_04607	0.73	+0.8
4,846,492	-		EFB2_04607	0.73	-1.3
4,846,492	-		EFB2_04607	0.73	+0.7
4,846,492	-		EFB2_04607	0.73	-0.2
4,846,492	-		EFB2_04607	0.73	-0.5
4,846,516	+		EFB2_04607	0.75	+0.1
4,846,516	+		EFB2_04607	0.75	+0.7
4,846,516	+		EFB2_04607	0.75	-0.7
4,846,516	+		EFB2_04607	0.75	-0.3
4,846,516	+		EFB2_04607	0.75	-0.3
4,846,516	+		EFB2_04607	0.75	-1.0
4,846,517	-		EFB2_04607	0.75	-0.4
4,846,517	-		EFB2_04607	0.75	-0.7
4,846,547	+		EFB2_04607	0.77	+1.0
4,846,547	+		EFB2_04607	0.77	+0.3
4,846,547	+		EFB2_04607	0.77	-0.2
4,846,547	+		EFB2_04607	0.77	+1.0
4,846,547	+		EFB2_04607	0.77	-0.4
4,846,547	+		EFB2_04607	0.77	-1.0
4,846,547	+		EFB2_04607	0.77	-1.9
4,846,547	+		EFB2_04607	0.77	-0.3
4,846,547	+		EFB2_04607	0.77	-1.5
4,846,547	+		EFB2_04607	0.77	+0.9
4,846,547	+		EFB2_04607	0.77	-1.7
4,846,547	+		EFB2_04607	0.77	-0.4
4,846,547	+		EFB2_04607	0.77	+0.2
4,846,547	+		EFB2_04607	0.77	-1.3
4,846,547	+		EFB2_04607	0.77	-0.3
4,846,548	-		EFB2_04607	0.77	+1.1
4,846,548	-		EFB2_04607	0.77	-0.2
4,846,548	-		EFB2_04607	0.77	+0.7
4,846,548	-		EFB2_04607	0.77	+0.8
4,846,548	-		EFB2_04607	0.77	-0.5
4,846,548	-		EFB2_04607	0.77	+0.5
4,846,548	-		EFB2_04607	0.77	-0.8
4,846,548	-		EFB2_04607	0.77	-0.2
4,846,548	-		EFB2_04607	0.77	-0.2
4,846,548	-		EFB2_04607	0.77	+0.5
4,846,548	-		EFB2_04607	0.77	-0.7
4,846,548	-		EFB2_04607	0.77	+1.0
4,846,548	-		EFB2_04607	0.77	+0.5
4,846,548	-		EFB2_04607	0.77	-0.3
4,846,548	-		EFB2_04607	0.77	+1.1
4,846,548	-		EFB2_04607	0.77	+0.6
4,846,548	-		EFB2_04607	0.77	+3.4
4,846,593	+		EFB2_04607	0.80	+0.4
4,846,593	+		EFB2_04607	0.80	+0.7
4,846,593	+		EFB2_04607	0.80	-0.7
4,846,593	+		EFB2_04607	0.80	-0.3
4,846,593	+		EFB2_04607	0.80	-0.9
4,846,593	+		EFB2_04607	0.80	+0.1
4,846,593	+		EFB2_04607	0.80	+0.0
4,846,593	+		EFB2_04607	0.80	-0.5
4,846,593	+		EFB2_04607	0.80	-0.5
4,846,594	-		EFB2_04607	0.80	+0.4
4,846,594	-		EFB2_04607	0.80	-0.2
4,846,594	-		EFB2_04607	0.80	-0.1
4,846,594	-		EFB2_04607	0.80	+1.6
4,846,594	-		EFB2_04607	0.80	-0.6
4,846,594	-		EFB2_04607	0.80	+1.7
4,846,594	-		EFB2_04607	0.80	-0.1
4,846,594	-		EFB2_04607	0.80	-0.9
4,846,623	+		EFB2_04607	0.83	-0.1
4,846,623	+		EFB2_04607	0.83	-0.2
4,846,623	+		EFB2_04607	0.83	-0.1
4,846,623	+		EFB2_04607	0.83	-0.1
4,846,623	+		EFB2_04607	0.83	+0.9
4,846,623	+		EFB2_04607	0.83	-1.5
4,846,623	+		EFB2_04607	0.83	+0.4
4,846,623	+		EFB2_04607	0.83	+1.2
4,846,623	+		EFB2_04607	0.83	-0.3
4,846,624	-		EFB2_04607	0.83	-0.5
4,846,624	-		EFB2_04607	0.83	-2.2
4,846,624	-		EFB2_04607	0.83	+1.1
4,846,624	-		EFB2_04607	0.83	+0.4
4,846,624	-		EFB2_04607	0.83	-1.2
4,846,624	-		EFB2_04607	0.83	-0.9
4,846,624	-		EFB2_04607	0.83	-0.0
4,846,624	-		EFB2_04607	0.83	+0.3
4,846,624	-		EFB2_04607	0.83	+0.2
4,846,624	-		EFB2_04607	0.83	+0.8
4,846,624	-		EFB2_04607	0.83	-0.2
4,846,649	+		EFB2_04607	0.84	-0.6
4,846,649	+		EFB2_04607	0.84	-2.4
4,846,649	+		EFB2_04607	0.84	+0.7
4,846,649	+		EFB2_04607	0.84	-0.7
4,846,649	+		EFB2_04607	0.84	+0.0
4,846,649	+		EFB2_04607	0.84	+0.1
4,846,649	+		EFB2_04607	0.84	+0.9
4,846,649	+		EFB2_04607	0.84	+1.1
4,846,649	+		EFB2_04607	0.84	+1.6
4,846,649	+		EFB2_04607	0.84	+0.8
4,846,649	+		EFB2_04607	0.84	-1.9
4,846,649	+		EFB2_04607	0.84	-1.8
4,846,649	+		EFB2_04607	0.84	+0.5
4,846,649	+		EFB2_04607	0.84	+0.1
4,846,649	+		EFB2_04607	0.84	-0.1
4,846,649	+		EFB2_04607	0.84	+0.9
4,846,649	+		EFB2_04607	0.84	-0.9
4,846,650	-		EFB2_04607	0.85	-0.1
4,846,650	-		EFB2_04607	0.85	+0.6
4,846,650	-		EFB2_04607	0.85	-0.5
4,846,650	-		EFB2_04607	0.85	+0.0
4,846,650	-		EFB2_04607	0.85	+0.2
4,846,650	-		EFB2_04607	0.85	-1.9
4,846,650	-		EFB2_04607	0.85	+2.3
4,846,650	-		EFB2_04607	0.85	+0.5
4,846,650	-		EFB2_04607	0.85	+0.2
4,846,650	-		EFB2_04607	0.85	+0.3
4,846,650	-		EFB2_04607	0.85	-0.3
4,846,650	-		EFB2_04607	0.85	-3.4
4,846,694	+		EFB2_04607	0.88	+0.3
4,846,694	+		EFB2_04607	0.88	-0.2
4,846,694	+		EFB2_04607	0.88	-0.2
4,846,694	+		EFB2_04607	0.88	+0.1
4,846,694	+		EFB2_04607	0.88	-0.0
4,846,694	+		EFB2_04607	0.88	+0.1
4,846,694	+		EFB2_04607	0.88	-0.2
4,846,695	-		EFB2_04607	0.88	+0.5
4,846,695	-		EFB2_04607	0.88	-0.4
4,846,695	-		EFB2_04607	0.88	+0.5
4,846,695	-		EFB2_04607	0.88	-1.0
4,846,695	-		EFB2_04607	0.88	-0.9
4,846,695	-		EFB2_04607	0.88	-1.7
4,846,698	+		EFB2_04607	0.88	+0.9
4,846,698	+		EFB2_04607	0.88	+1.0
4,846,698	+		EFB2_04607	0.88	-0.4
4,846,698	+		EFB2_04607	0.88	+1.0
4,846,698	+		EFB2_04607	0.88	-0.3
4,846,698	+		EFB2_04607	0.88	-0.6
4,846,698	+		EFB2_04607	0.88	-0.9
4,846,698	+		EFB2_04607	0.88	-0.1
4,846,698	+		EFB2_04607	0.88	-0.8
4,846,698	+		EFB2_04607	0.88	+0.8
4,846,698	+		EFB2_04607	0.88	-1.7
4,846,698	+		EFB2_04607	0.88	+0.0
4,846,698	+		EFB2_04607	0.88	-0.3
4,846,698	+		EFB2_04607	0.88	-1.1
4,846,698	+		EFB2_04607	0.88	+0.1
4,846,698	+		EFB2_04607	0.88	-1.0
4,846,698	+		EFB2_04607	0.88	+0.1
4,846,698	+		EFB2_04607	0.88	-1.6
4,846,698	+		EFB2_04607	0.88	+0.0
4,846,698	+		EFB2_04607	0.88	+0.4
4,846,699	-		EFB2_04607	0.88	+0.9
4,846,699	-		EFB2_04607	0.88	-1.7
4,846,699	-		EFB2_04607	0.88	+0.2
4,846,699	-		EFB2_04607	0.88	-1.1
4,846,699	-		EFB2_04607	0.88	+1.2
4,846,699	-		EFB2_04607	0.88	-1.8
4,846,699	-		EFB2_04607	0.88	-0.3
4,846,699	-		EFB2_04607	0.88	+0.7
4,846,699	-		EFB2_04607	0.88	+1.4
4,846,699	-		EFB2_04607	0.88	-1.2
4,846,699	-		EFB2_04607	0.88	-1.4
4,846,699	-		EFB2_04607	0.88	+0.2
4,846,699	-		EFB2_04607	0.88	+1.1
4,846,699	-		EFB2_04607	0.88	+0.8
4,846,699	-		EFB2_04607	0.88	+1.1
4,846,818	+				-0.4
4,846,826	+				+1.4
4,846,826	+				+0.6
4,846,826	+				-0.7
4,846,826	+				+0.5
4,846,826	+				+1.1
4,846,826	+				-0.7
4,846,827	-				+0.8
4,846,827	-				+1.5
4,846,827	-				-1.4
4,846,827	-				-0.8
4,846,827	-				+0.9
4,846,830	+				+0.2
4,846,830	+				-1.4
4,846,830	+				-0.3
4,846,830	+				+0.3
4,846,830	+				-0.7
4,846,830	+				+0.6
4,846,831	-				-1.5
4,846,831	-				+0.1
4,846,831	-				+0.5
4,846,831	-				+0.4
4,846,831	-				-2.9
4,846,831	-				-0.2
4,846,841	+				+0.1
4,846,841	+				+0.4
4,846,841	+				+0.4
4,846,841	+				-1.0
4,846,841	+				+2.0
4,846,841	+				-0.1
4,846,841	+				+0.2
4,846,841	+				-0.5
4,846,841	+				+1.3
4,846,842	-				-0.5
4,846,842	-				-0.1
4,846,853	+				+0.3
4,846,853	+				-0.9
4,846,853	+				+1.8
4,846,853	+				-1.7
4,846,853	+				-1.1
4,846,854	-				-0.6
4,846,854	-				+0.6
4,846,854	-				-0.2
4,846,854	-				-0.4
4,846,854	-				-0.2
4,846,854	-				-0.5
4,846,854	-				+0.1
4,846,915	+				-0.8
4,846,926	-				-0.7
4,847,024	-		EFB2_04608	0.43	-0.7
4,847,032	+		EFB2_04608	0.49	+0.4
4,847,032	+		EFB2_04608	0.49	-0.4
4,847,033	-		EFB2_04608	0.50	-4.4
4,847,067	-		EFB2_04608	0.76	-0.1
4,847,075	+		EFB2_04608	0.82	+0.1
4,847,075	+		EFB2_04608	0.82	-0.2
4,847,075	+		EFB2_04608	0.82	-0.2
4,847,075	+		EFB2_04608	0.82	+1.4
4,847,075	+		EFB2_04608	0.82	+0.5
4,847,075	+		EFB2_04608	0.82	-1.9
4,847,075	+		EFB2_04608	0.82	+0.2
4,847,075	+		EFB2_04608	0.82	-2.6
4,847,075	+		EFB2_04608	0.82	-0.6
4,847,076	-		EFB2_04608	0.83	-0.9
4,847,076	-		EFB2_04608	0.83	-2.6
4,847,076	-		EFB2_04608	0.83	+2.1
4,847,076	-		EFB2_04608	0.83	+0.4
4,847,076	-		EFB2_04608	0.83	+0.5
4,847,128	+				-0.2
4,847,192	+		EFB2_04609	0.22	+0.2
4,847,192	+		EFB2_04609	0.22	-0.1
4,847,192	+		EFB2_04609	0.22	-0.5
4,847,192	+		EFB2_04609	0.22	-0.6
4,847,192	+		EFB2_04609	0.22	+0.3
4,847,192	+		EFB2_04609	0.22	-2.9
4,847,192	+		EFB2_04609	0.22	-0.5
4,847,192	+		EFB2_04609	0.22	+0.1
4,847,192	+		EFB2_04609	0.22	+0.5
4,847,192	+		EFB2_04609	0.22	+1.1
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