Strain Fitness in Escherichia fergusonii Becca around EFB2_04468

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,687,991	-		EFB2_04467	0.34	+0.9
4,687,991	-		EFB2_04467	0.34	+1.0
4,688,003	+		EFB2_04467	0.34	-0.7
4,688,003	+		EFB2_04467	0.34	-0.3
4,688,041	+		EFB2_04467	0.37	+0.2
4,688,042	-		EFB2_04467	0.37	-0.3
4,688,042	-		EFB2_04467	0.37	+0.4
4,688,073	+		EFB2_04467	0.40	+0.5
4,688,073	+		EFB2_04467	0.40	-0.1
4,688,073	+		EFB2_04467	0.40	-1.9
4,688,073	+		EFB2_04467	0.40	+0.8
4,688,073	+		EFB2_04467	0.40	+1.2
4,688,073	+		EFB2_04467	0.40	+1.5
4,688,073	+		EFB2_04467	0.40	+0.1
4,688,073	+		EFB2_04467	0.40	+1.0
4,688,073	+		EFB2_04467	0.40	+0.4
4,688,073	+		EFB2_04467	0.40	-0.2
4,688,073	+		EFB2_04467	0.40	+0.9
4,688,073	+		EFB2_04467	0.40	+2.2
4,688,073	+		EFB2_04467	0.40	-0.4
4,688,073	+		EFB2_04467	0.40	+1.5
4,688,073	+		EFB2_04467	0.40	+1.2
4,688,073	+		EFB2_04467	0.40	+0.0
4,688,073	+		EFB2_04467	0.40	-1.1
4,688,073	+		EFB2_04467	0.40	-2.1
4,688,073	+		EFB2_04467	0.40	-0.2
4,688,073	+		EFB2_04467	0.40	-0.1
4,688,073	+		EFB2_04467	0.40	-0.4
4,688,073	+		EFB2_04467	0.40	-1.7
4,688,073	+		EFB2_04467	0.40	+0.0
4,688,073	+		EFB2_04467	0.40	+0.5
4,688,073	+		EFB2_04467	0.40	-1.9
4,688,073	+		EFB2_04467	0.40	+0.7
4,688,073	+		EFB2_04467	0.40	+0.0
4,688,073	+		EFB2_04467	0.40	-3.2
4,688,073	+		EFB2_04467	0.40	+0.6
4,688,074	-		EFB2_04467	0.40	-1.2
4,688,074	-		EFB2_04467	0.40	+1.5
4,688,074	-		EFB2_04467	0.40	+2.4
4,688,074	-		EFB2_04467	0.40	+1.2
4,688,074	-		EFB2_04467	0.40	-0.3
4,688,074	-		EFB2_04467	0.40	-1.7
4,688,074	-		EFB2_04467	0.40	+0.1
4,688,074	-		EFB2_04467	0.40	+0.6
4,688,074	-		EFB2_04467	0.40	+0.5
4,688,074	-		EFB2_04467	0.40	-2.1
4,688,074	-		EFB2_04467	0.40	-0.1
4,688,074	-		EFB2_04467	0.40	-3.6
4,688,074	-		EFB2_04467	0.40	+0.0
4,688,074	-		EFB2_04467	0.40	-0.4
4,688,074	-		EFB2_04467	0.40	+0.3
4,688,074	-		EFB2_04467	0.40	+2.2
4,688,074	-		EFB2_04467	0.40	-0.9
4,688,074	-		EFB2_04467	0.40	+0.8
4,688,074	-		EFB2_04467	0.40	-0.7
4,688,074	-		EFB2_04467	0.40	-1.6
4,688,074	-		EFB2_04467	0.40	+1.9
4,688,074	-		EFB2_04467	0.40	-2.6
4,688,074	-		EFB2_04467	0.40	+1.2
4,688,074	-		EFB2_04467	0.40	+0.1
4,688,075	+		EFB2_04467	0.40	+0.2
4,688,076	-		EFB2_04467	0.40	-2.0
4,688,076	-		EFB2_04467	0.40	+0.9
4,688,076	-		EFB2_04467	0.40	-0.8
4,688,076	-		EFB2_04467	0.40	+1.4
4,688,126	+		EFB2_04467	0.44	-3.2
4,688,126	+		EFB2_04467	0.44	+1.0
4,688,126	+		EFB2_04467	0.44	-0.6
4,688,127	-		EFB2_04467	0.44	-2.1
4,688,127	-		EFB2_04467	0.44	-2.3
4,688,127	-		EFB2_04467	0.44	-1.6
4,688,127	-		EFB2_04467	0.44	+0.3
4,688,133	-		EFB2_04467	0.44	-0.1
4,688,138	+		EFB2_04467	0.45	+0.6
4,688,138	+		EFB2_04467	0.45	+0.0
4,688,138	+		EFB2_04467	0.45	+0.1
4,688,139	-		EFB2_04467	0.45	-0.2
4,688,217	-		EFB2_04467	0.50	+1.3
4,688,236	+		EFB2_04467	0.52	+0.9
4,688,256	+		EFB2_04467	0.53	+1.0
4,688,256	+		EFB2_04467	0.53	+0.8
4,688,256	+		EFB2_04467	0.53	+0.3
4,688,256	+		EFB2_04467	0.53	+0.1
4,688,256	+		EFB2_04467	0.53	+1.0
4,688,256	+		EFB2_04467	0.53	-0.0
4,688,256	+		EFB2_04467	0.53	+0.3
4,688,256	+		EFB2_04467	0.53	+0.2
4,688,256	+		EFB2_04467	0.53	+0.2
4,688,256	+		EFB2_04467	0.53	-0.4
4,688,256	+		EFB2_04467	0.53	-1.7
4,688,256	+		EFB2_04467	0.53	+1.7
4,688,256	+		EFB2_04467	0.53	+0.1
4,688,256	+		EFB2_04467	0.53	-0.3
4,688,256	+		EFB2_04467	0.53	+0.7
4,688,256	+		EFB2_04467	0.53	-0.5
4,688,257	-		EFB2_04467	0.53	-0.7
4,688,257	-		EFB2_04467	0.53	-1.1
4,688,257	-		EFB2_04467	0.53	+0.5
4,688,257	-		EFB2_04467	0.53	+0.9
4,688,257	-		EFB2_04467	0.53	-1.4
4,688,257	-		EFB2_04467	0.53	+1.0
4,688,257	-		EFB2_04467	0.53	+0.2
4,688,260	+		EFB2_04467	0.54	+2.3
4,688,260	+		EFB2_04467	0.54	-0.8
4,688,260	+		EFB2_04467	0.54	+0.3
4,688,260	+		EFB2_04467	0.54	+0.1
4,688,260	+		EFB2_04467	0.54	-0.3
4,688,260	+		EFB2_04467	0.54	-2.5
4,688,260	+		EFB2_04467	0.54	-1.9
4,688,261	-		EFB2_04467	0.54	-3.7
4,688,261	-		EFB2_04467	0.54	+1.1
4,688,261	-		EFB2_04467	0.54	-0.1
4,688,261	-		EFB2_04467	0.54	+0.2
4,688,261	-		EFB2_04467	0.54	+0.9
4,688,261	-		EFB2_04467	0.54	+0.3
4,688,261	-		EFB2_04467	0.54	-2.3
4,688,261	-		EFB2_04467	0.54	-0.5
4,688,261	-		EFB2_04467	0.54	+0.2
4,688,261	-		EFB2_04467	0.54	-1.4
4,688,261	-		EFB2_04467	0.54	+1.7
4,688,261	-		EFB2_04467	0.54	-0.2
4,688,261	-		EFB2_04467	0.54	-0.8
4,688,261	-		EFB2_04467	0.54	-1.5
4,688,261	-		EFB2_04467	0.54	-0.7
4,688,261	-		EFB2_04467	0.54	-0.3
4,688,267	+		EFB2_04467	0.54	-3.4
4,688,268	-		EFB2_04467	0.54	-0.8
4,688,268	-		EFB2_04467	0.54	-0.0
4,688,268	-		EFB2_04467	0.54	+2.2
4,688,279	+		EFB2_04467	0.55	-2.8
4,688,292	-		EFB2_04467	0.56	-0.7
4,688,294	+		EFB2_04467	0.56	-0.6
4,688,294	+		EFB2_04467	0.56	+0.3
4,688,401	+		EFB2_04467	0.64	+0.6
4,688,401	+		EFB2_04467	0.64	+0.2
4,688,401	+		EFB2_04467	0.64	+0.1
4,688,401	+		EFB2_04467	0.64	-1.0
4,688,401	+		EFB2_04467	0.64	-2.4
4,688,401	+		EFB2_04467	0.64	-2.4
4,688,401	+		EFB2_04467	0.64	+0.9
4,688,401	+		EFB2_04467	0.64	+0.5
4,688,401	+		EFB2_04467	0.64	-0.9
4,688,401	+		EFB2_04467	0.64	-1.8
4,688,401	+		EFB2_04467	0.64	-0.2
4,688,401	+		EFB2_04467	0.64	+0.1
4,688,401	+		EFB2_04467	0.64	+0.3
4,688,401	+		EFB2_04467	0.64	-1.8
4,688,401	+		EFB2_04467	0.64	-1.3
4,688,401	+		EFB2_04467	0.64	-1.2
4,688,401	+		EFB2_04467	0.64	+0.1
4,688,402	-		EFB2_04467	0.64	-0.1
4,688,402	-		EFB2_04467	0.64	-2.3
4,688,402	-		EFB2_04467	0.64	+1.1
4,688,402	-		EFB2_04467	0.64	-1.5
4,688,402	-		EFB2_04467	0.64	+1.9
4,688,402	-		EFB2_04467	0.64	+1.4
4,688,402	-		EFB2_04467	0.64	+1.3
4,688,491	+		EFB2_04467	0.71	-0.6
4,688,491	+		EFB2_04467	0.71	+1.6
4,688,491	+		EFB2_04467	0.71	+0.3
4,688,491	+		EFB2_04467	0.71	+0.4
4,688,492	-		EFB2_04467	0.71	+0.8
4,688,492	-		EFB2_04467	0.71	-0.1
4,688,492	-		EFB2_04467	0.71	-2.1
4,688,492	-		EFB2_04467	0.71	+1.1
4,688,492	-		EFB2_04467	0.71	-0.4
4,688,492	-		EFB2_04467	0.71	-2.2
4,688,495	+		EFB2_04467	0.71	-1.1
4,688,495	+		EFB2_04467	0.71	+1.7
4,688,496	-		EFB2_04467	0.71	-2.0
4,688,534	+		EFB2_04467	0.74	-3.1
4,688,535	-		EFB2_04467	0.74	+0.3
4,688,561	+		EFB2_04467	0.76	-0.1
4,688,561	+		EFB2_04467	0.76	+0.3
4,688,562	-		EFB2_04467	0.76	-0.4
4,688,562	-		EFB2_04467	0.76	-0.6
4,688,621	+		EFB2_04467	0.81	-0.0
4,688,621	+		EFB2_04467	0.81	-1.3
4,688,621	+		EFB2_04467	0.81	+1.4
4,688,621	+		EFB2_04467	0.81	-1.0
4,688,622	-		EFB2_04467	0.81	-0.5
4,688,622	-		EFB2_04467	0.81	+0.3
4,688,634	+		EFB2_04467	0.82	-3.3
4,688,634	+		EFB2_04467	0.82	-0.3
4,688,635	-		EFB2_04467	0.82	-0.0
4,688,635	-		EFB2_04467	0.82	+3.3
4,688,640	+		EFB2_04467	0.82	+0.3
4,688,640	+		EFB2_04467	0.82	-2.2
4,688,640	+		EFB2_04467	0.82	-1.0
4,688,640	+		EFB2_04467	0.82	+0.2
4,688,641	-		EFB2_04467	0.82	+0.2
4,688,641	-		EFB2_04467	0.82	-1.1
4,688,641	-		EFB2_04467	0.82	-0.5
4,688,656	+		EFB2_04467	0.83	-2.3
4,688,656	+		EFB2_04467	0.83	-0.4
4,688,657	-		EFB2_04467	0.83	-1.3
4,688,657	-		EFB2_04467	0.83	+1.1
4,688,657	-		EFB2_04467	0.83	-1.3
4,688,659	+		EFB2_04467	0.83	+0.4
4,688,659	+		EFB2_04467	0.83	+0.5
4,688,659	+		EFB2_04467	0.83	+1.4
4,688,659	+		EFB2_04467	0.83	+0.2
4,688,659	+		EFB2_04467	0.83	+2.4
4,688,659	+		EFB2_04467	0.83	+2.2
4,688,659	+		EFB2_04467	0.83	-0.8
4,688,660	-		EFB2_04467	0.84	-0.2
4,688,660	-		EFB2_04467	0.84	+0.6
4,688,660	-		EFB2_04467	0.84	-1.0
4,688,660	-		EFB2_04467	0.84	-2.6
4,688,660	-		EFB2_04467	0.84	+0.7
4,688,660	-		EFB2_04467	0.84	+1.3
4,688,660	-		EFB2_04467	0.84	+0.7
4,688,684	+		EFB2_04467	0.85	-2.6
4,688,700	+		EFB2_04467	0.87	+0.8
4,688,700	+		EFB2_04467	0.87	+0.2
4,688,700	+		EFB2_04467	0.87	-0.1
4,688,700	+		EFB2_04467	0.87	-1.8
4,688,700	+		EFB2_04467	0.87	+1.2
4,688,701	-		EFB2_04467	0.87	+0.8
4,688,701	-		EFB2_04467	0.87	+0.3
4,688,701	-		EFB2_04467	0.87	-1.1
4,688,701	-		EFB2_04467	0.87	-0.0
4,688,711	+		EFB2_04467	0.87	-1.0
4,688,711	+		EFB2_04467	0.87	+0.9
4,688,711	+		EFB2_04467	0.87	-0.7
4,688,711	+		EFB2_04467	0.87	-0.2
4,688,711	+		EFB2_04467	0.87	-1.0
4,688,711	+		EFB2_04467	0.87	-0.1
4,688,711	+		EFB2_04467	0.87	+0.7
4,688,712	-		EFB2_04467	0.87	-2.7
4,688,712	-		EFB2_04467	0.87	-1.8
4,688,712	-		EFB2_04467	0.87	-2.6
4,688,712	-		EFB2_04467	0.87	+0.7
4,688,712	-		EFB2_04467	0.87	+0.8
4,688,714	+		EFB2_04467	0.88	-1.4
4,688,714	+		EFB2_04467	0.88	-1.1
4,688,714	+		EFB2_04467	0.88	+0.2
4,688,714	+		EFB2_04467	0.88	+1.4
4,688,714	+		EFB2_04467	0.88	-0.3
4,688,714	+		EFB2_04467	0.88	+0.4
4,688,714	+		EFB2_04467	0.88	+0.3
4,688,714	+		EFB2_04467	0.88	-1.6
4,688,714	+		EFB2_04467	0.88	+0.5
4,688,714	+		EFB2_04467	0.88	-0.2
4,688,714	+		EFB2_04467	0.88	-0.9
4,688,715	-		EFB2_04467	0.88	+0.5
4,688,715	-		EFB2_04467	0.88	-3.2
4,688,715	-		EFB2_04467	0.88	-0.9
4,688,715	-		EFB2_04467	0.88	-0.1
4,688,715	-		EFB2_04467	0.88	+0.4
4,688,715	-		EFB2_04467	0.88	-0.1
4,688,715	-		EFB2_04467	0.88	+0.3
4,688,715	-		EFB2_04467	0.88	-0.1
4,688,715	-		EFB2_04467	0.88	+1.1
4,688,730	+		EFB2_04467	0.89	-0.9
4,688,731	-		EFB2_04467	0.89	-0.4
4,688,746	+				+0.2
4,688,747	-				-0.1
4,688,747	-				-1.0
4,688,749	+				+0.2
4,688,749	+				-0.0
4,688,749	+				-0.1
4,688,749	+				-0.1
4,688,749	+				-1.3
4,688,750	-				+0.9
4,688,750	-				-0.0
4,688,750	-				-0.2
4,688,750	-				+0.9
4,688,750	-				+1.7
4,688,750	-				-0.7
4,688,771	+				-0.1
4,688,771	+				-2.6
4,688,771	+				+0.1
4,688,771	+				-1.1
4,688,771	+				+0.4
4,688,771	+				+1.2
4,688,771	+				+1.0
4,688,771	+				+0.6
4,688,771	+				-1.8
4,688,772	-				+1.1
4,688,772	-				+0.6
4,688,772	-				+0.4
4,688,772	-				+1.5
4,688,772	-				-0.8
4,688,772	-				-3.0
4,688,772	-				-0.0
4,688,772	-				-0.0
4,688,772	-				-0.9
4,688,797	+				-0.2
4,688,797	+				-0.3
4,688,798	-				-1.4
4,688,798	-				-0.6
4,688,798	-				+1.1
4,688,811	+				-0.3
4,688,811	+				+0.9
4,688,811	+				+1.8
4,688,811	+				-0.6
4,688,811	+				+0.6
4,688,811	+				+0.2
4,688,811	+				-0.4
4,688,811	+				-0.3
4,688,811	+				-0.1
4,688,811	+				+1.2
4,688,811	+				+1.1
4,688,811	+				-0.3
4,688,811	+				+0.0
4,688,811	+				-0.2
4,688,811	+				-0.7
4,688,811	+				+0.6
4,688,811	+				-0.7
4,688,811	+				-0.4
4,688,811	+				-0.1
4,688,811	+				-2.5
4,688,811	+				-2.3
4,688,811	+				-1.0
4,688,811	+				+0.7
4,688,811	+				-0.9
4,688,811	+				+0.9
4,688,811	+				-0.8
4,688,811	+				+2.0
4,688,811	+				-0.3
4,688,811	+				+0.8
4,688,811	+				-1.5
4,688,811	+				-1.1
4,688,811	+				+0.3
4,688,811	+				+1.4
4,688,811	+				+0.2
4,688,811	+				-0.4
4,688,811	+				-0.3
4,688,811	+				+0.3
4,688,811	+				-0.6
4,688,811	+				+0.3
4,688,812	-				-0.0
4,688,812	-				-2.2
4,688,812	-				+1.2
4,688,812	-				+1.0
4,688,812	-				-0.0
4,688,812	-				+0.6
4,688,812	-				-0.2
4,688,812	-				-0.8
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4,691,264	+				-1.4
4,691,264	+				-1.5
4,691,264	+				+0.2
4,691,264	+				-0.1
4,691,264	+				-3.4
4,691,264	+				-0.6
4,691,264	+				-0.0
4,691,265	-				+0.9
4,691,265	-				+1.3
4,691,265	-				-2.9
4,691,265	-				-0.2
4,691,265	-				+0.0
4,691,265	-				-0.6
4,691,265	-				-0.8
4,691,265	-				-0.2
4,691,345	-				-0.7
4,691,345	-				-3.4
4,691,398	+				+0.4
4,691,398	+				-3.7
4,691,399	-				-0.6
4,691,411	+		EFB2_04470	0.11	-3.7
4,691,443	+		EFB2_04470	0.14	+0.4
4,691,526	-		EFB2_04470	0.21	-0.1
4,691,526	-		EFB2_04470	0.21	-1.7
4,691,542	+		EFB2_04470	0.23	-1.9
4,691,543	-		EFB2_04470	0.23	-0.0
4,691,543	-		EFB2_04470	0.23	-1.1
4,691,543	-		EFB2_04470	0.23	-0.3
4,691,543	-		EFB2_04470	0.23	+0.2
4,691,543	-		EFB2_04470	0.23	-0.5
4,691,546	+		EFB2_04470	0.23	+0.9
4,691,546	+		EFB2_04470	0.23	-0.4
4,691,546	+		EFB2_04470	0.23	-0.6
4,691,547	-		EFB2_04470	0.23	-0.7
4,691,547	-		EFB2_04470	0.23	+0.9
4,691,547	-		EFB2_04470	0.23	+0.6
4,691,547	-		EFB2_04470	0.23	-1.6
4,691,547	-		EFB2_04470	0.23	-0.5
4,691,547	-		EFB2_04470	0.23	-0.2
4,691,553	+		EFB2_04470	0.24	-0.5
4,691,554	-		EFB2_04470	0.24	-2.2
4,691,554	-		EFB2_04470	0.24	+2.2
4,691,554	-		EFB2_04470	0.24	+1.3
4,691,554	-		EFB2_04470	0.24	+0.5