Strain Fitness in Escherichia fergusonii Becca around EFB2_03729

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,903,054	-				+0.3
3,903,054	-				+0.6
3,903,054	-				+1.1
3,903,094	+				+0.1
3,903,094	+				+1.2
3,903,095	-				-1.0
3,903,095	-				+0.3
3,903,095	-				+0.1
3,903,097	+				-0.2
3,903,098	-				+0.6
3,903,155	+				-2.9
3,903,155	+				+0.2
3,903,155	+				-2.3
3,903,155	+				-1.2
3,903,155	+				-0.7
3,903,155	+				-1.7
3,903,155	+				+0.6
3,903,155	+				-0.2
3,903,155	+				-0.4
3,903,155	+				+0.1
3,903,155	+				-0.2
3,903,155	+				+0.6
3,903,155	+				-0.9
3,903,155	+				+1.9
3,903,155	+				-0.8
3,903,155	+				-1.1
3,903,155	+				-0.4
3,903,156	-				+2.7
3,903,156	-				-1.3
3,903,156	-				-0.2
3,903,156	-				-2.1
3,903,156	-				-2.5
3,903,156	-				-1.3
3,903,156	-				+0.4
3,903,156	-				-0.2
3,903,156	-				+0.8
3,903,156	-				+0.3
3,903,156	-				+0.4
3,903,156	-				+0.2
3,903,156	-				+0.7
3,903,156	-				-1.0
3,903,156	-				+0.0
3,903,156	-				-0.7
3,903,156	-				+1.4
3,903,156	-				-0.7
3,903,156	-				+0.3
3,903,156	-				+0.3
3,903,157	+		EFB2_03727	0.10	-0.4
3,903,157	+		EFB2_03727	0.10	+0.4
3,903,157	+		EFB2_03727	0.10	+0.6
3,903,158	-		EFB2_03727	0.10	-2.9
3,903,158	-		EFB2_03727	0.10	+0.6
3,903,158	-		EFB2_03727	0.10	+0.3
3,903,170	+		EFB2_03727	0.12	-0.0
3,903,170	+		EFB2_03727	0.12	-0.1
3,903,170	+		EFB2_03727	0.12	+0.3
3,903,170	+		EFB2_03727	0.12	-2.5
3,903,171	-		EFB2_03727	0.12	-0.1
3,903,171	-		EFB2_03727	0.12	-0.5
3,903,171	-		EFB2_03727	0.12	+0.9
3,903,171	-		EFB2_03727	0.12	+0.6
3,903,171	-		EFB2_03727	0.12	+2.1
3,903,171	-		EFB2_03727	0.12	+0.9
3,903,184	+		EFB2_03727	0.13	-1.0
3,903,184	+		EFB2_03727	0.13	+2.5
3,903,185	-		EFB2_03727	0.14	-0.7
3,903,185	-		EFB2_03727	0.14	-0.6
3,903,185	-		EFB2_03727	0.14	-0.7
3,903,185	-		EFB2_03727	0.14	-1.4
3,903,185	-		EFB2_03727	0.14	+0.1
3,903,185	-		EFB2_03727	0.14	+0.3
3,903,185	-		EFB2_03727	0.14	-1.3
3,903,204	+		EFB2_03727	0.16	+0.2
3,903,204	+		EFB2_03727	0.16	-0.5
3,903,204	+		EFB2_03727	0.16	+0.0
3,903,204	+		EFB2_03727	0.16	+0.7
3,903,204	+		EFB2_03727	0.16	+1.3
3,903,205	-		EFB2_03727	0.16	+0.4
3,903,205	-		EFB2_03727	0.16	+0.4
3,903,221	+		EFB2_03727	0.18	-1.0
3,903,221	+		EFB2_03727	0.18	-0.1
3,903,222	-		EFB2_03727	0.18	+1.0
3,903,222	-		EFB2_03727	0.18	-0.4
3,903,228	+		EFB2_03727	0.19	-1.5
3,903,229	-		EFB2_03727	0.19	-1.8
3,903,229	-		EFB2_03727	0.19	+1.9
3,903,368	+		EFB2_03727	0.37	-3.4
3,903,368	+		EFB2_03727	0.37	+0.8
3,903,368	+		EFB2_03727	0.37	-1.5
3,903,369	-		EFB2_03727	0.37	-0.0
3,903,369	-		EFB2_03727	0.37	+0.6
3,903,369	-		EFB2_03727	0.37	-1.9
3,903,369	-		EFB2_03727	0.37	+0.0
3,903,369	-		EFB2_03727	0.37	-0.8
3,903,369	-		EFB2_03727	0.37	+0.3
3,903,369	-		EFB2_03727	0.37	+1.8
3,903,369	-		EFB2_03727	0.37	+0.3
3,903,369	-		EFB2_03727	0.37	+0.1
3,903,371	-		EFB2_03727	0.37	-1.7
3,903,428	-		EFB2_03727	0.44	+0.4
3,903,438	+		EFB2_03727	0.45	+1.3
3,903,460	+		EFB2_03727	0.48	+2.7
3,903,505	+		EFB2_03727	0.54	-1.3
3,903,505	+		EFB2_03727	0.54	-0.4
3,903,505	+		EFB2_03727	0.54	-1.3
3,903,505	+		EFB2_03727	0.54	+0.9
3,903,505	+		EFB2_03727	0.54	+0.6
3,903,506	-		EFB2_03727	0.54	-0.2
3,903,506	-		EFB2_03727	0.54	-0.1
3,903,506	-		EFB2_03727	0.54	+0.3
3,903,524	-		EFB2_03727	0.56	+1.4
3,903,524	-		EFB2_03727	0.56	-1.2
3,903,641	+		EFB2_03727	0.71	-1.7
3,903,641	+		EFB2_03727	0.71	-1.6
3,903,641	+		EFB2_03727	0.71	-0.7
3,903,641	+		EFB2_03727	0.71	-0.2
3,903,641	+		EFB2_03727	0.71	-1.0
3,903,641	+		EFB2_03727	0.71	+0.7
3,903,642	-		EFB2_03727	0.71	-0.1
3,903,642	-		EFB2_03727	0.71	-0.5
3,903,642	-		EFB2_03727	0.71	+0.3
3,903,676	+		EFB2_03727	0.75	-0.8
3,903,677	-		EFB2_03727	0.75	-1.6
3,903,677	-		EFB2_03727	0.75	-0.1
3,903,677	-		EFB2_03727	0.75	-0.8
3,903,677	-		EFB2_03727	0.75	-0.2
3,903,678	+		EFB2_03727	0.76	-0.1
3,903,678	+		EFB2_03727	0.76	-0.6
3,903,678	+		EFB2_03727	0.76	-0.2
3,903,678	+		EFB2_03727	0.76	+1.7
3,903,678	+		EFB2_03727	0.76	-2.6
3,903,678	+		EFB2_03727	0.76	-2.6
3,903,678	+		EFB2_03727	0.76	+1.8
3,903,678	+		EFB2_03727	0.76	-1.4
3,903,678	+		EFB2_03727	0.76	-1.7
3,903,679	-		EFB2_03727	0.76	-0.8
3,903,679	-		EFB2_03727	0.76	+0.7
3,903,679	-		EFB2_03727	0.76	+0.5
3,903,679	-		EFB2_03727	0.76	-0.5
3,903,679	-		EFB2_03727	0.76	+0.4
3,903,684	+		EFB2_03727	0.76	-2.1
3,903,684	+		EFB2_03727	0.76	+0.0
3,903,684	+		EFB2_03727	0.76	-0.9
3,903,684	+		EFB2_03727	0.76	+0.5
3,903,684	+		EFB2_03727	0.76	+0.1
3,903,685	-		EFB2_03727	0.76	-0.2
3,903,685	-		EFB2_03727	0.76	+0.0
3,903,685	-		EFB2_03727	0.76	-1.1
3,903,685	-		EFB2_03727	0.76	+1.8
3,903,685	-		EFB2_03727	0.76	-0.6
3,903,685	-		EFB2_03727	0.76	+1.6
3,903,685	-		EFB2_03727	0.76	+1.4
3,903,695	+		EFB2_03727	0.78	+0.4
3,903,695	+		EFB2_03727	0.78	-1.6
3,903,695	+		EFB2_03727	0.78	-0.7
3,903,695	+		EFB2_03727	0.78	+0.3
3,903,695	+		EFB2_03727	0.78	+0.0
3,903,696	-		EFB2_03727	0.78	+0.1
3,903,696	-		EFB2_03727	0.78	-0.2
3,903,696	-		EFB2_03727	0.78	+0.8
3,903,696	-		EFB2_03727	0.78	-1.5
3,903,696	-		EFB2_03727	0.78	-1.6
3,903,696	-		EFB2_03727	0.78	+1.2
3,903,696	-		EFB2_03727	0.78	+1.0
3,903,696	-		EFB2_03727	0.78	-0.4
3,903,696	-		EFB2_03727	0.78	+0.9
3,903,697	+		EFB2_03727	0.78	+0.0
3,903,697	+		EFB2_03727	0.78	-0.1
3,903,698	-		EFB2_03727	0.78	+0.6
3,903,731	+		EFB2_03727	0.82	-0.4
3,903,731	+		EFB2_03727	0.82	+0.1
3,903,731	+		EFB2_03727	0.82	+1.5
3,903,731	+		EFB2_03727	0.82	-0.4
3,903,731	+		EFB2_03727	0.82	+0.7
3,903,731	+		EFB2_03727	0.82	-0.2
3,903,731	+		EFB2_03727	0.82	+1.3
3,903,731	+		EFB2_03727	0.82	-2.2
3,903,731	+		EFB2_03727	0.82	-0.9
3,903,732	-		EFB2_03727	0.82	+0.3
3,903,732	-		EFB2_03727	0.82	-1.1
3,903,732	-		EFB2_03727	0.82	+0.5
3,903,732	-		EFB2_03727	0.82	-0.3
3,903,732	-		EFB2_03727	0.82	+0.8
3,903,732	-		EFB2_03727	0.82	-2.1
3,903,732	-		EFB2_03727	0.82	+0.1
3,903,732	-		EFB2_03727	0.82	-1.7
3,903,732	-		EFB2_03727	0.82	+0.2
3,903,732	-		EFB2_03727	0.82	-0.2
3,903,732	-		EFB2_03727	0.82	+0.7
3,903,732	-		EFB2_03727	0.82	+0.2
3,903,732	-		EFB2_03727	0.82	+1.3
3,903,732	-		EFB2_03727	0.82	+0.4
3,903,792	+				-0.2
3,903,793	-				-2.1
3,903,820	-				+0.5
3,903,841	+				-1.2
3,903,841	+				-0.3
3,903,841	+				+1.2
3,903,841	+				-0.1
3,903,842	-				+1.3
3,903,842	-				-1.1
3,903,867	+				-1.1
3,903,867	+				+1.0
3,903,886	+		EFB2_03728	0.13	-2.0
3,903,887	-		EFB2_03728	0.13	+0.8
3,903,887	-		EFB2_03728	0.13	+1.2
3,903,887	-		EFB2_03728	0.13	+0.5
3,903,887	-		EFB2_03728	0.13	+0.6
3,903,890	-		EFB2_03728	0.16	+0.8
3,903,909	-		EFB2_03728	0.29	+2.5
3,903,919	+		EFB2_03728	0.36	+1.0
3,903,919	+		EFB2_03728	0.36	-0.2
3,903,920	-		EFB2_03728	0.37	+1.5
3,903,920	-		EFB2_03728	0.37	+0.8
3,903,926	+		EFB2_03728	0.41	+0.0
3,903,926	+		EFB2_03728	0.41	-0.8
3,903,926	+		EFB2_03728	0.41	+0.2
3,903,926	+		EFB2_03728	0.41	-1.7
3,903,926	+		EFB2_03728	0.41	+1.3
3,903,926	+		EFB2_03728	0.41	+1.1
3,903,926	+		EFB2_03728	0.41	+0.0
3,903,926	+		EFB2_03728	0.41	-0.3
3,903,926	+		EFB2_03728	0.41	+0.7
3,903,926	+		EFB2_03728	0.41	+1.7
3,903,926	+		EFB2_03728	0.41	+0.8
3,903,926	+		EFB2_03728	0.41	+0.5
3,903,926	+		EFB2_03728	0.41	-0.5
3,903,927	-		EFB2_03728	0.42	-0.4
3,903,927	-		EFB2_03728	0.42	-2.1
3,903,927	-		EFB2_03728	0.42	+0.8
3,903,927	-		EFB2_03728	0.42	-0.3
3,903,927	-		EFB2_03728	0.42	-2.4
3,903,927	-		EFB2_03728	0.42	+1.4
3,903,938	+		EFB2_03728	0.50	+0.0
3,903,938	+		EFB2_03728	0.50	-2.5
3,903,939	-		EFB2_03728	0.50	+0.2
3,903,939	-		EFB2_03728	0.50	-1.7
3,903,939	-		EFB2_03728	0.50	+1.8
3,903,979	+		EFB2_03728	0.79	-2.6
3,903,980	-		EFB2_03728	0.79	+0.2
3,903,980	-		EFB2_03728	0.79	-0.2
3,903,980	-		EFB2_03728	0.79	+0.6
3,903,980	-		EFB2_03728	0.79	-1.9
3,903,988	+		EFB2_03728	0.85	-0.8
3,903,988	+		EFB2_03728	0.85	+0.4
3,903,988	+		EFB2_03728	0.85	+0.8
3,903,989	-		EFB2_03728	0.86	+0.2
3,903,989	-		EFB2_03728	0.86	+0.8
3,903,989	-		EFB2_03728	0.86	+0.7
3,904,004	-				+0.0
3,904,004	-				+0.3
3,904,059	+				+0.9
3,904,059	+				-1.7
3,904,059	+				-1.1
3,904,060	-				-0.2
3,904,080	+				-1.5
3,904,080	+				-0.8
3,904,080	+				+0.3
3,904,081	-				+1.3
3,904,081	-				-1.3
3,904,081	-				-0.7
3,904,081	-				+0.8
3,904,105	+		EFB2_03729	0.10	+0.9
3,904,105	+		EFB2_03729	0.10	-0.9
3,904,106	-		EFB2_03729	0.11	-2.7
3,904,106	-		EFB2_03729	0.11	-2.3
3,904,131	+		EFB2_03729	0.14	-0.7
3,904,132	-		EFB2_03729	0.14	+1.8
3,904,132	-		EFB2_03729	0.14	-2.0
3,904,132	-		EFB2_03729	0.14	-1.0
3,904,138	+		EFB2_03729	0.15	-2.5
3,904,138	+		EFB2_03729	0.15	-0.9
3,904,139	-		EFB2_03729	0.15	+0.4
3,904,139	-		EFB2_03729	0.15	+1.5
3,904,217	+		EFB2_03729	0.25	+0.8
3,904,242	+		EFB2_03729	0.28	+0.1
3,904,242	+		EFB2_03729	0.28	+1.3
3,904,242	+		EFB2_03729	0.28	-2.9
3,904,242	+		EFB2_03729	0.28	-0.2
3,904,242	+		EFB2_03729	0.28	+1.0
3,904,242	+		EFB2_03729	0.28	+0.3
3,904,242	+		EFB2_03729	0.28	+0.8
3,904,243	-		EFB2_03729	0.29	-0.1
3,904,243	-		EFB2_03729	0.29	-0.7
3,904,243	-		EFB2_03729	0.29	+0.7
3,904,243	-		EFB2_03729	0.29	+0.4
3,904,243	-		EFB2_03729	0.29	-1.6
3,904,243	-		EFB2_03729	0.29	-1.0
3,904,243	-		EFB2_03729	0.29	+1.3
3,904,243	-		EFB2_03729	0.29	-0.2
3,904,243	-		EFB2_03729	0.29	+0.6
3,904,243	-		EFB2_03729	0.29	+1.4
3,904,282	+		EFB2_03729	0.34	-0.4
3,904,282	+		EFB2_03729	0.34	+0.4
3,904,283	-		EFB2_03729	0.34	-1.6
3,904,283	-		EFB2_03729	0.34	-0.8
3,904,312	-		EFB2_03729	0.38	+0.0
3,904,332	+		EFB2_03729	0.40	-1.5
3,904,332	+		EFB2_03729	0.40	+2.3
3,904,332	+		EFB2_03729	0.40	-0.1
3,904,333	-		EFB2_03729	0.40	+0.3
3,904,333	-		EFB2_03729	0.40	-1.6
3,904,333	-		EFB2_03729	0.40	-0.9
3,904,342	+		EFB2_03729	0.42	-0.4
3,904,342	+		EFB2_03729	0.42	+0.7
3,904,342	+		EFB2_03729	0.42	+0.4
3,904,343	-		EFB2_03729	0.42	+0.8
3,904,405	+		EFB2_03729	0.50	+0.7
3,904,405	+		EFB2_03729	0.50	+0.2
3,904,405	+		EFB2_03729	0.50	-3.2
3,904,405	+		EFB2_03729	0.50	-2.3
3,904,405	+		EFB2_03729	0.50	-0.1
3,904,406	-		EFB2_03729	0.50	-1.4
3,904,406	-		EFB2_03729	0.50	+0.8
3,904,415	+		EFB2_03729	0.51	-1.9
3,904,415	+		EFB2_03729	0.51	-0.7
3,904,415	+		EFB2_03729	0.51	-1.2
3,904,415	+		EFB2_03729	0.51	-0.1
3,904,415	+		EFB2_03729	0.51	+0.4
3,904,415	+		EFB2_03729	0.51	-1.2
3,904,415	+		EFB2_03729	0.51	-0.9
3,904,415	+		EFB2_03729	0.51	+0.7
3,904,415	+		EFB2_03729	0.51	-2.2
3,904,415	+		EFB2_03729	0.51	+0.8
3,904,415	+		EFB2_03729	0.51	-1.0
3,904,415	+		EFB2_03729	0.51	+0.8
3,904,415	+		EFB2_03729	0.51	-0.5
3,904,415	+		EFB2_03729	0.51	+1.1
3,904,415	+		EFB2_03729	0.51	+0.5
3,904,415	+		EFB2_03729	0.51	-1.7
3,904,415	+		EFB2_03729	0.51	+0.3
3,904,415	+		EFB2_03729	0.51	-2.0
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