Strain Fitness in Escherichia fergusonii Becca around EFB2_03565

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,723,653	+		EFB2_03563	0.83	-0.5
3,723,654	-		EFB2_03563	0.83	-0.6
3,723,654	-		EFB2_03563	0.83	-2.2
3,723,654	-		EFB2_03563	0.83	+0.4
3,723,654	-		EFB2_03563	0.83	+1.7
3,723,705	+		EFB2_03563	0.89	+1.2
3,723,705	+		EFB2_03563	0.89	-1.3
3,723,705	+		EFB2_03563	0.89	-2.7
3,723,705	+		EFB2_03563	0.89	+0.4
3,723,705	+		EFB2_03563	0.89	+0.1
3,723,705	+		EFB2_03563	0.89	+0.7
3,723,706	-		EFB2_03563	0.89	+1.1
3,723,706	-		EFB2_03563	0.89	-0.4
3,723,706	-		EFB2_03563	0.89	+0.4
3,723,763	+				-0.2
3,723,763	+				-2.0
3,723,763	+				-0.1
3,723,764	-				-0.8
3,723,764	-				-0.2
3,723,778	+				-0.1
3,723,778	+				+0.3
3,723,778	+				+0.2
3,723,778	+				+0.8
3,723,778	+				+0.5
3,723,778	+				+0.6
3,723,778	+				-1.7
3,723,778	+				+1.3
3,723,778	+				+1.4
3,723,779	-				-1.5
3,723,779	-				-0.7
3,723,779	-				+0.9
3,723,779	-				-0.7
3,723,779	-				-0.2
3,723,779	-				-0.2
3,723,790	+				-0.7
3,723,790	+				-0.1
3,723,790	+				+0.9
3,723,790	+				+0.7
3,723,790	+				+0.9
3,723,790	+				+1.2
3,723,790	+				-0.1
3,723,790	+				-0.5
3,723,790	+				-0.4
3,723,790	+				+0.4
3,723,790	+				-1.2
3,723,791	-				-0.2
3,723,791	-				-0.4
3,723,791	-				-0.3
3,723,791	-				-0.2
3,723,791	-				+2.3
3,723,791	-				+0.9
3,723,791	-				+0.1
3,723,791	-				+0.9
3,723,791	-				+0.6
3,723,905	-				-1.7
3,723,905	-				-1.0
3,723,905	-				+1.1
3,723,911	+				+2.8
3,723,911	+				-0.6
3,723,912	-				-0.8
3,723,912	-				+0.4
3,723,916	+				+1.1
3,723,917	-				+0.3
3,723,917	-				-0.5
3,723,921	+				+0.6
3,723,922	-				-2.6
3,723,925	+				-0.0
3,723,925	+				-2.5
3,723,925	+				-2.2
3,723,926	-				+1.2
3,723,926	-				-0.4
3,723,926	-				+0.2
3,723,926	-				+0.4
3,723,926	-				+0.4
3,723,926	-				-0.7
3,723,935	+				+0.7
3,723,941	+		EFB2_03564	0.11	+0.2
3,723,942	-		EFB2_03564	0.11	-0.0
3,723,968	+		EFB2_03564	0.14	+1.1
3,723,968	+		EFB2_03564	0.14	-0.8
3,723,968	+		EFB2_03564	0.14	-0.2
3,723,968	+		EFB2_03564	0.14	-0.8
3,723,968	+		EFB2_03564	0.14	-1.6
3,723,969	-		EFB2_03564	0.14	-1.8
3,723,969	-		EFB2_03564	0.14	+0.1
3,723,980	+		EFB2_03564	0.16	+0.9
3,723,981	-		EFB2_03564	0.16	-0.2
3,723,981	-		EFB2_03564	0.16	-0.1
3,723,981	-		EFB2_03564	0.16	+1.6
3,723,981	-		EFB2_03564	0.16	-0.3
3,723,988	+		EFB2_03564	0.17	-1.4
3,723,988	+		EFB2_03564	0.17	-0.5
3,723,989	-		EFB2_03564	0.17	+0.2
3,723,992	+		EFB2_03564	0.17	+1.2
3,723,992	+		EFB2_03564	0.17	+0.8
3,723,992	+		EFB2_03564	0.17	+1.4
3,723,992	+		EFB2_03564	0.17	+0.3
3,723,992	+		EFB2_03564	0.17	-2.2
3,723,992	+		EFB2_03564	0.17	-1.0
3,723,993	-		EFB2_03564	0.17	+1.2
3,723,993	-		EFB2_03564	0.17	-0.1
3,724,014	-		EFB2_03564	0.20	-0.2
3,724,023	+		EFB2_03564	0.21	+0.4
3,724,023	+		EFB2_03564	0.21	-1.0
3,724,023	+		EFB2_03564	0.21	-0.3
3,724,023	+		EFB2_03564	0.21	-2.0
3,724,024	-		EFB2_03564	0.21	-0.2
3,724,024	-		EFB2_03564	0.21	+0.2
3,724,024	-		EFB2_03564	0.21	-3.8
3,724,024	-		EFB2_03564	0.21	-0.5
3,724,047	+		EFB2_03564	0.24	+0.1
3,724,048	-		EFB2_03564	0.24	+1.6
3,724,048	-		EFB2_03564	0.24	+0.2
3,724,056	+		EFB2_03564	0.25	+1.3
3,724,056	+		EFB2_03564	0.25	+0.4
3,724,056	+		EFB2_03564	0.25	+0.6
3,724,057	-		EFB2_03564	0.26	-2.5
3,724,057	-		EFB2_03564	0.26	-0.7
3,724,063	-		EFB2_03564	0.26	+0.2
3,724,093	-		EFB2_03564	0.30	-2.5
3,724,106	+		EFB2_03564	0.32	-0.9
3,724,106	+		EFB2_03564	0.32	-0.5
3,724,123	-		EFB2_03564	0.34	+1.7
3,724,203	+		EFB2_03564	0.44	-1.3
3,724,204	-		EFB2_03564	0.44	-0.3
3,724,213	+		EFB2_03564	0.46	-1.2
3,724,213	+		EFB2_03564	0.46	+0.2
3,724,213	+		EFB2_03564	0.46	+0.4
3,724,214	-		EFB2_03564	0.46	-0.5
3,724,214	-		EFB2_03564	0.46	+1.7
3,724,214	-		EFB2_03564	0.46	-0.8
3,724,214	-		EFB2_03564	0.46	+0.8
3,724,231	-		EFB2_03564	0.48	+1.2
3,724,248	+		EFB2_03564	0.50	-0.0
3,724,323	-		EFB2_03564	0.60	-0.4
3,724,341	-		EFB2_03564	0.62	-0.7
3,724,341	-		EFB2_03564	0.62	-0.4
3,724,350	-		EFB2_03564	0.63	+0.6
3,724,361	+		EFB2_03564	0.64	-0.7
3,724,361	+		EFB2_03564	0.64	+1.6
3,724,361	+		EFB2_03564	0.64	+0.8
3,724,361	+		EFB2_03564	0.64	+0.1
3,724,362	-		EFB2_03564	0.65	+2.8
3,724,362	-		EFB2_03564	0.65	+2.2
3,724,370	+		EFB2_03564	0.66	-0.6
3,724,370	+		EFB2_03564	0.66	-1.3
3,724,376	+		EFB2_03564	0.66	+1.3
3,724,376	+		EFB2_03564	0.66	-1.3
3,724,376	+		EFB2_03564	0.66	-0.6
3,724,377	-		EFB2_03564	0.67	-0.6
3,724,377	-		EFB2_03564	0.67	-0.0
3,724,378	+		EFB2_03564	0.67	-0.1
3,724,378	+		EFB2_03564	0.67	+2.0
3,724,378	+		EFB2_03564	0.67	-0.3
3,724,378	+		EFB2_03564	0.67	-2.4
3,724,379	-		EFB2_03564	0.67	+0.9
3,724,379	-		EFB2_03564	0.67	-0.5
3,724,379	-		EFB2_03564	0.67	-0.4
3,724,379	-		EFB2_03564	0.67	+0.6
3,724,379	-		EFB2_03564	0.67	+0.8
3,724,383	-		EFB2_03564	0.67	-0.0
3,724,383	-		EFB2_03564	0.67	-1.7
3,724,383	-		EFB2_03564	0.67	+1.6
3,724,412	+		EFB2_03564	0.71	-0.5
3,724,412	+		EFB2_03564	0.71	+0.3
3,724,413	-		EFB2_03564	0.71	+0.4
3,724,413	-		EFB2_03564	0.71	-1.0
3,724,421	+		EFB2_03564	0.72	-1.6
3,724,422	-		EFB2_03564	0.72	-0.1
3,724,422	-		EFB2_03564	0.72	-1.0
3,724,425	+		EFB2_03564	0.73	+3.6
3,724,425	+		EFB2_03564	0.73	-2.4
3,724,425	-		EFB2_03564	0.73	-0.2
3,724,426	-		EFB2_03564	0.73	-1.4
3,724,426	-		EFB2_03564	0.73	+0.9
3,724,426	-		EFB2_03564	0.73	-2.2
3,724,426	-		EFB2_03564	0.73	+2.3
3,724,426	-		EFB2_03564	0.73	-0.5
3,724,437	+		EFB2_03564	0.74	-0.7
3,724,438	-		EFB2_03564	0.74	-0.1
3,724,438	-		EFB2_03564	0.74	-0.5
3,724,438	-		EFB2_03564	0.74	-0.5
3,724,471	+		EFB2_03564	0.79	+0.7
3,724,483	+		EFB2_03564	0.80	+0.8
3,724,483	+		EFB2_03564	0.80	+0.2
3,724,483	+		EFB2_03564	0.80	-0.1
3,724,493	+		EFB2_03564	0.81	-0.9
3,724,493	+		EFB2_03564	0.81	-2.2
3,724,494	-		EFB2_03564	0.82	+0.6
3,724,494	-		EFB2_03564	0.82	+1.0
3,724,532	+		EFB2_03564	0.86	+1.3
3,724,532	+		EFB2_03564	0.86	-2.1
3,724,532	+		EFB2_03564	0.86	-0.7
3,724,533	-		EFB2_03564	0.87	+1.3
3,724,533	-		EFB2_03564	0.87	+0.5
3,724,533	-		EFB2_03564	0.87	-0.0
3,724,559	+		EFB2_03564	0.90	+0.0
3,724,565	+				+2.6
3,724,565	+				-2.4
3,724,565	+				-1.2
3,724,566	-				-2.5
3,724,566	-				-0.4
3,724,569	+				+2.6
3,724,569	+				-1.4
3,724,569	+				-2.7
3,724,569	+				-1.3
3,724,570	-				-1.9
3,724,570	-				+0.2
3,724,570	-				+0.2
3,724,616	+				+0.3
3,724,616	+				-0.0
3,724,619	+				-0.5
3,724,620	-				-1.3
3,724,620	-				+0.3
3,724,622	+				-0.3
3,724,622	+				-0.7
3,724,622	+				-0.5
3,724,622	+				-0.9
3,724,622	+				+1.3
3,724,622	+				-0.8
3,724,623	-				+0.4
3,724,623	-				+1.3
3,724,623	-				-0.5
3,724,623	-				+0.4
3,724,623	-				-0.2
3,724,623	-				-0.9
3,724,623	-				+0.0
3,724,623	-				+1.1
3,724,623	-				-1.5
3,724,626	-				+0.1
3,724,659	+				-3.0
3,724,677	+				+0.0
3,724,677	+				+0.3
3,724,677	+				+0.6
3,724,699	-		EFB2_03565	0.11	-1.1
3,724,711	-		EFB2_03565	0.13	-1.5
3,724,737	+		EFB2_03565	0.17	+0.6
3,724,738	-		EFB2_03565	0.17	-0.9
3,724,750	+		EFB2_03565	0.19	-2.7
3,724,751	-		EFB2_03565	0.19	-2.3
3,724,751	-		EFB2_03565	0.19	-1.8
3,724,754	+		EFB2_03565	0.19	+0.2
3,724,754	+		EFB2_03565	0.19	-0.1
3,724,754	+		EFB2_03565	0.19	+0.0
3,724,779	+		EFB2_03565	0.23	-0.7
3,724,779	+		EFB2_03565	0.23	+0.8
3,724,779	+		EFB2_03565	0.23	+0.8
3,724,780	-		EFB2_03565	0.23	+1.4
3,724,780	-		EFB2_03565	0.23	-2.3
3,724,780	-		EFB2_03565	0.23	-0.4
3,724,780	-		EFB2_03565	0.23	-2.0
3,724,786	-		EFB2_03565	0.24	+2.2
3,724,788	+		EFB2_03565	0.24	-2.4
3,724,789	-		EFB2_03565	0.24	-0.8
3,724,789	-		EFB2_03565	0.24	+1.3
3,724,789	-		EFB2_03565	0.24	-2.0
3,724,789	-		EFB2_03565	0.24	-1.1
3,724,789	-		EFB2_03565	0.24	-1.7
3,724,825	+		EFB2_03565	0.30	-0.3
3,725,005	-		EFB2_03565	0.56	+0.6
3,725,009	+		EFB2_03565	0.57	+1.4
3,725,009	+		EFB2_03565	0.57	-1.3
3,725,009	+		EFB2_03565	0.57	+0.2
3,725,010	-		EFB2_03565	0.57	-0.7
3,725,010	-		EFB2_03565	0.57	-4.0
3,725,010	-		EFB2_03565	0.57	+1.4
3,725,010	-		EFB2_03565	0.57	+0.6
3,725,011	+		EFB2_03565	0.57	-1.4
3,725,012	-		EFB2_03565	0.57	-2.1
3,725,017	-		EFB2_03565	0.58	-0.1
3,725,048	+		EFB2_03565	0.63	-0.5
3,725,048	+		EFB2_03565	0.63	+0.4
3,725,066	+		EFB2_03565	0.65	+0.4
3,725,067	-		EFB2_03565	0.65	+0.9
3,725,080	+		EFB2_03565	0.67	-1.2
3,725,080	+		EFB2_03565	0.67	-1.8
3,725,080	+		EFB2_03565	0.67	+1.9
3,725,081	-		EFB2_03565	0.67	-0.2
3,725,081	-		EFB2_03565	0.67	+0.6
3,725,081	-		EFB2_03565	0.67	+0.3
3,725,146	+		EFB2_03565	0.77	-2.5
3,725,147	-		EFB2_03565	0.77	+0.4
3,725,147	-		EFB2_03565	0.77	+1.3
3,725,153	-		EFB2_03565	0.78	-0.4
3,725,160	+		EFB2_03565	0.79	+1.1
3,725,161	-		EFB2_03565	0.79	-2.3
3,725,161	-		EFB2_03565	0.79	-1.0
3,725,161	-		EFB2_03565	0.79	+0.1
3,725,161	-		EFB2_03565	0.79	+0.4
3,725,161	-		EFB2_03565	0.79	-1.5
3,725,161	-		EFB2_03565	0.79	-1.3
3,725,188	-		EFB2_03565	0.83	+0.2
3,725,191	+		EFB2_03565	0.84	+1.3
3,725,191	+		EFB2_03565	0.84	+1.6
3,725,192	-		EFB2_03565	0.84	-0.3
3,725,196	+		EFB2_03565	0.84	-0.3
3,725,197	-		EFB2_03565	0.85	-0.5
3,725,197	-		EFB2_03565	0.85	+0.8
3,725,197	-		EFB2_03565	0.85	-2.0
3,725,229	+		EFB2_03565	0.89	-2.1
3,725,230	-		EFB2_03565	0.89	-2.4
3,725,230	-		EFB2_03565	0.89	+0.3
3,725,232	+		EFB2_03565	0.90	-1.4
3,725,232	+		EFB2_03565	0.90	-1.0
3,725,233	-		EFB2_03565	0.90	-0.7
3,725,233	-		EFB2_03565	0.90	-3.0
3,725,233	-		EFB2_03565	0.90	+0.8
3,725,259	-				-2.1
3,725,263	+				-1.4
3,725,263	+				-3.2
3,725,264	-				-1.3
3,725,264	-				-0.3
3,725,264	-				+0.6
3,725,272	+				+0.9
3,725,289	+				-2.8
3,725,289	+				+2.9
3,725,290	-				-0.8
3,725,340	-				-1.9
3,725,355	-				+1.0
3,725,376	-				+0.4
3,725,376	-				+0.4
3,725,383	+				+0.6
3,725,384	-				-0.4
3,725,385	+				-0.4
3,725,385	+				+1.4
3,725,385	+				+1.2
3,725,386	-				+1.5
3,725,395	-				+0.3
3,725,428	-				-0.1
3,725,452	+				+1.6
3,725,452	+				-0.1
3,725,452	+				-0.3
3,725,452	+				-1.6
3,725,452	+				-2.6
3,725,452	+				+1.5
3,725,452	+				+0.5
3,725,453	-				-2.0
3,725,453	-				+0.2
3,725,453	-				-2.6
3,725,453	-				-0.5
3,725,453	-				-0.3
3,725,453	-				-0.9
3,725,453	-				-1.1
3,725,453	-				+0.7
3,725,538	+				-2.1
3,725,538	+				+0.9
3,725,539	-		EFB2_03566	0.10	+2.3
3,725,555	+		EFB2_03566	0.12	+0.5
3,725,555	+		EFB2_03566	0.12	+1.1
3,725,556	-		EFB2_03566	0.12	+0.3
3,725,556	-		EFB2_03566	0.12	+0.3
3,725,556	-		EFB2_03566	0.12	-2.4
3,725,568	+		EFB2_03566	0.13	-2.3
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3,726,282	+				-2.3
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