Strain Fitness in Escherichia fergusonii Becca around EFB2_03232

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,386,283	+		EFB2_03230	0.27	-0.7
3,386,283	+		EFB2_03230	0.27	-1.1
3,386,283	+		EFB2_03230	0.27	+1.3
3,386,353	+		EFB2_03230	0.39	-0.7
3,386,353	+		EFB2_03230	0.39	-2.1
3,386,353	+		EFB2_03230	0.39	-0.1
3,386,353	+		EFB2_03230	0.39	-0.0
3,386,353	+		EFB2_03230	0.39	+0.2
3,386,353	+		EFB2_03230	0.39	+0.1
3,386,353	+		EFB2_03230	0.39	-0.9
3,386,353	+		EFB2_03230	0.39	+1.1
3,386,353	+		EFB2_03230	0.39	+2.1
3,386,353	+		EFB2_03230	0.39	-0.4
3,386,353	+		EFB2_03230	0.39	-0.5
3,386,377	+		EFB2_03230	0.43	-0.7
3,386,377	+		EFB2_03230	0.43	+0.3
3,386,377	+		EFB2_03230	0.43	+1.0
3,386,455	+		EFB2_03230	0.57	+0.3
3,386,455	+		EFB2_03230	0.57	+0.3
3,386,455	+		EFB2_03230	0.57	-0.4
3,386,455	+		EFB2_03230	0.57	+0.1
3,386,455	+		EFB2_03230	0.57	-0.1
3,386,489	+		EFB2_03230	0.63	+1.1
3,386,576	+		EFB2_03230	0.78	-1.1
3,386,646	+		EFB2_03230	0.90	-0.1
3,386,646	+		EFB2_03230	0.90	+0.1
3,386,646	+		EFB2_03230	0.90	+1.7
3,386,646	+		EFB2_03230	0.90	+0.7
3,386,646	+		EFB2_03230	0.90	-0.4
3,386,646	+		EFB2_03230	0.90	-1.1
3,386,646	+		EFB2_03230	0.90	+0.4
3,386,646	+		EFB2_03230	0.90	+0.9
3,386,646	+		EFB2_03230	0.90	-1.7
3,386,646	+		EFB2_03230	0.90	-1.3
3,386,646	+		EFB2_03230	0.90	+0.3
3,386,646	+		EFB2_03230	0.90	-1.4
3,386,672	+				-0.6
3,386,673	-				+0.7
3,386,673	-				+0.7
3,386,691	+				-2.9
3,386,692	-				-1.6
3,386,705	+				-0.0
3,386,754	+				+1.0
3,386,755	-				-0.3
3,386,755	-				-0.9
3,386,755	-				+0.3
3,386,755	-				-1.1
3,386,755	-				-0.9
3,386,767	-				+0.9
3,386,832	-		EFB2_03231	0.13	+0.7
3,386,832	-		EFB2_03231	0.13	-1.2
3,386,832	-		EFB2_03231	0.13	+0.7
3,386,901	+		EFB2_03231	0.28	-0.3
3,386,901	+		EFB2_03231	0.28	-3.2
3,386,901	+		EFB2_03231	0.28	-0.1
3,386,901	+		EFB2_03231	0.28	+1.0
3,386,932	+		EFB2_03231	0.35	-0.5
3,386,932	+		EFB2_03231	0.35	+0.5
3,386,932	+		EFB2_03231	0.35	-1.9
3,386,932	+		EFB2_03231	0.35	-3.8
3,386,932	+		EFB2_03231	0.35	+0.3
3,386,932	+		EFB2_03231	0.35	-2.2
3,386,932	+		EFB2_03231	0.35	-0.7
3,386,932	+		EFB2_03231	0.35	-1.6
3,386,933	-		EFB2_03231	0.36	+0.9
3,386,933	-		EFB2_03231	0.36	-0.9
3,386,933	-		EFB2_03231	0.36	-0.5
3,386,933	-		EFB2_03231	0.36	-0.5
3,386,933	-		EFB2_03231	0.36	-2.1
3,386,933	-		EFB2_03231	0.36	+0.4
3,386,933	-		EFB2_03231	0.36	+0.2
3,386,933	-		EFB2_03231	0.36	-1.4
3,386,933	-		EFB2_03231	0.36	+0.5
3,386,982	+		EFB2_03231	0.47	-1.1
3,386,982	+		EFB2_03231	0.47	+0.6
3,386,983	-		EFB2_03231	0.47	+0.3
3,386,983	-		EFB2_03231	0.47	+1.0
3,387,063	+		EFB2_03231	0.65	-1.2
3,387,063	+		EFB2_03231	0.65	-0.5
3,387,063	+		EFB2_03231	0.65	-2.6
3,387,063	+		EFB2_03231	0.65	-0.2
3,387,063	+		EFB2_03231	0.65	+2.1
3,387,063	+		EFB2_03231	0.65	-2.4
3,387,063	+		EFB2_03231	0.65	-0.7
3,387,064	-		EFB2_03231	0.65	+2.0
3,387,064	-		EFB2_03231	0.65	+0.5
3,387,064	-		EFB2_03231	0.65	-1.6
3,387,064	-		EFB2_03231	0.65	+0.1
3,387,064	-		EFB2_03231	0.65	-0.3
3,387,064	-		EFB2_03231	0.65	-0.6
3,387,064	-		EFB2_03231	0.65	-2.0
3,387,064	-		EFB2_03231	0.65	-0.2
3,387,261	+		EFB2_03232	0.11	+0.8
3,387,262	-		EFB2_03232	0.11	+0.7
3,387,262	-		EFB2_03232	0.11	+0.9
3,387,263	+		EFB2_03232	0.12	+0.4
3,387,263	+		EFB2_03232	0.12	+0.3
3,387,264	-		EFB2_03232	0.12	-1.4
3,387,264	-		EFB2_03232	0.12	-0.9
3,387,264	-		EFB2_03232	0.12	-0.1
3,387,264	-		EFB2_03232	0.12	+0.3
3,387,264	-		EFB2_03232	0.12	-0.5
3,387,264	-		EFB2_03232	0.12	-1.1
3,387,285	-		EFB2_03232	0.17	+0.6
3,387,285	-		EFB2_03232	0.17	+0.5
3,387,285	-		EFB2_03232	0.17	-1.4
3,387,335	+		EFB2_03232	0.28	+1.4
3,387,360	-		EFB2_03232	0.34	+0.7
3,387,379	-		EFB2_03232	0.38	+0.4
3,387,379	-		EFB2_03232	0.38	+0.1
3,387,379	-		EFB2_03232	0.38	+0.3
3,387,401	+		EFB2_03232	0.44	+0.7
3,387,503	-		EFB2_03232	0.67	-0.0
3,387,508	+		EFB2_03232	0.68	+2.3
3,387,508	+		EFB2_03232	0.68	-0.7
3,387,509	-		EFB2_03232	0.69	+1.7
3,387,521	+		EFB2_03232	0.71	-1.8
3,387,521	+		EFB2_03232	0.71	+1.5
3,387,521	+		EFB2_03232	0.71	-3.2
3,387,521	+		EFB2_03232	0.71	-1.3
3,387,521	+		EFB2_03232	0.71	+0.9
3,387,521	+		EFB2_03232	0.71	+3.3
3,387,521	+		EFB2_03232	0.71	-1.3
3,387,521	+		EFB2_03232	0.71	-0.6
3,387,521	+		EFB2_03232	0.71	+0.8
3,387,521	+		EFB2_03232	0.71	+0.7
3,387,521	+		EFB2_03232	0.71	-0.6
3,387,522	-		EFB2_03232	0.72	-1.1
3,387,522	-		EFB2_03232	0.72	-0.6
3,387,522	-		EFB2_03232	0.72	+0.1
3,387,522	-		EFB2_03232	0.72	-0.7
3,387,522	-		EFB2_03232	0.72	+1.4
3,387,522	-		EFB2_03232	0.72	-1.2
3,387,522	-		EFB2_03232	0.72	-1.1
3,387,522	-		EFB2_03232	0.72	-0.7
3,387,522	-		EFB2_03232	0.72	+1.4
3,387,522	-		EFB2_03232	0.72	+2.3
3,387,522	-		EFB2_03232	0.72	-0.5
3,387,522	-		EFB2_03232	0.72	-2.3
3,387,584	+		EFB2_03232	0.86	-0.3
3,387,595	+		EFB2_03232	0.88	+0.2
3,387,595	+		EFB2_03232	0.88	+0.5
3,387,595	+		EFB2_03232	0.88	-0.5
3,387,595	+		EFB2_03232	0.88	-1.0
3,387,595	+		EFB2_03232	0.88	-1.0
3,387,595	+		EFB2_03232	0.88	+2.5
3,387,595	+		EFB2_03232	0.88	+1.7
3,387,595	+		EFB2_03232	0.88	-0.7
3,387,595	+		EFB2_03232	0.88	-2.9
3,387,595	+		EFB2_03232	0.88	-1.7
3,387,595	+		EFB2_03232	0.88	-0.3
3,387,595	+		EFB2_03232	0.88	+0.1
3,387,595	+		EFB2_03232	0.88	+0.3
3,387,595	+		EFB2_03232	0.88	+0.4
3,387,595	+		EFB2_03232	0.88	+0.7
3,387,596	-		EFB2_03232	0.89	+0.8
3,387,596	-		EFB2_03232	0.89	+0.8
3,387,596	-		EFB2_03232	0.89	+2.4
3,387,596	-		EFB2_03232	0.89	+0.8
3,387,596	-		EFB2_03232	0.89	-0.9
3,387,596	-		EFB2_03232	0.89	-1.5
3,387,596	-		EFB2_03232	0.89	+0.3
3,387,596	-		EFB2_03232	0.89	-1.6
3,387,596	-		EFB2_03232	0.89	+0.8
3,387,596	-		EFB2_03232	0.89	+1.3
3,387,596	-		EFB2_03232	0.89	-0.7
3,387,596	-		EFB2_03232	0.89	+0.2
3,387,596	-		EFB2_03232	0.89	+1.7
3,387,596	-		EFB2_03232	0.89	+1.1
3,387,596	-		EFB2_03232	0.89	+0.6
3,387,608	+				+0.6
3,387,666	+				-2.0
3,387,666	+				-0.9
3,387,667	-				+0.9
3,387,667	-				-3.1
3,387,741	+				-2.7
3,387,741	+				+0.2
3,387,742	-				-0.5
3,387,801	+		EFB2_03233	0.14	-0.9
3,387,865	+		EFB2_03233	0.29	+0.3
3,387,866	-		EFB2_03233	0.29	+1.4
3,387,881	+		EFB2_03233	0.33	-0.1
3,387,882	-		EFB2_03233	0.33	+0.7
3,387,882	-		EFB2_03233	0.33	-0.7
3,387,963	+		EFB2_03233	0.52	-1.3
3,387,964	-		EFB2_03233	0.52	-1.5
3,388,015	+		EFB2_03233	0.64	+1.5
3,388,015	+		EFB2_03233	0.64	+0.1
3,388,015	+		EFB2_03233	0.64	-1.6
3,388,016	-		EFB2_03233	0.64	+2.3
3,388,133	+				-2.9
3,388,134	-				+0.5
3,388,136	+				+0.4
3,388,137	-				+2.3
3,388,230	-		EFB2_03234	0.17	-1.9
3,388,243	-		EFB2_03234	0.21	+2.3
3,388,245	+		EFB2_03234	0.21	-2.5
3,388,245	+		EFB2_03234	0.21	-0.1
3,388,245	+		EFB2_03234	0.21	-2.7
3,388,245	+		EFB2_03234	0.21	+4.6
3,388,245	+		EFB2_03234	0.21	-2.1
3,388,246	-		EFB2_03234	0.21	+0.5
3,388,246	-		EFB2_03234	0.21	-0.2
3,388,246	-		EFB2_03234	0.21	-3.9
3,388,246	-		EFB2_03234	0.21	-3.1
3,388,270	+		EFB2_03234	0.28	+3.0
3,388,270	+		EFB2_03234	0.28	+0.5
3,388,270	+		EFB2_03234	0.28	+2.1
3,388,270	+		EFB2_03234	0.28	+0.1
3,388,270	+		EFB2_03234	0.28	-0.2
3,388,270	+		EFB2_03234	0.28	-2.4
3,388,270	+		EFB2_03234	0.28	+0.8
3,388,270	+		EFB2_03234	0.28	+0.8
3,388,270	+		EFB2_03234	0.28	-1.0
3,388,271	-		EFB2_03234	0.28	-1.1
3,388,271	-		EFB2_03234	0.28	-0.9
3,388,271	-		EFB2_03234	0.28	+0.8
3,388,271	-		EFB2_03234	0.28	+2.6
3,388,302	+		EFB2_03234	0.36	-2.4
3,388,303	-		EFB2_03234	0.37	+0.8
3,388,303	-		EFB2_03234	0.37	+0.4
3,388,303	-		EFB2_03234	0.37	+0.3
3,388,306	+		EFB2_03234	0.37	+0.7
3,388,306	+		EFB2_03234	0.37	-1.6
3,388,306	+		EFB2_03234	0.37	-1.2
3,388,306	+		EFB2_03234	0.37	-1.6
3,388,306	+		EFB2_03234	0.37	+0.3
3,388,307	-		EFB2_03234	0.38	+2.3
3,388,307	-		EFB2_03234	0.38	-2.3
3,388,307	-		EFB2_03234	0.38	+0.7
3,388,307	-		EFB2_03234	0.38	-0.1
3,388,307	-		EFB2_03234	0.38	-1.0
3,388,307	-		EFB2_03234	0.38	+1.3
3,388,307	-		EFB2_03234	0.38	-2.6
3,388,307	-		EFB2_03234	0.38	+1.2
3,388,323	+		EFB2_03234	0.42	+0.8
3,388,323	+		EFB2_03234	0.42	-1.5
3,388,324	-		EFB2_03234	0.42	+2.3
3,388,374	+		EFB2_03234	0.55	-0.9
3,388,374	+		EFB2_03234	0.55	-1.3
3,388,374	+		EFB2_03234	0.55	-1.1
3,388,374	+		EFB2_03234	0.55	-1.6
3,388,374	+		EFB2_03234	0.55	+0.6
3,388,375	-		EFB2_03234	0.56	-0.9
3,388,375	-		EFB2_03234	0.56	-1.5
3,388,375	-		EFB2_03234	0.56	-1.3
3,388,375	-		EFB2_03234	0.56	-0.1
3,388,375	-		EFB2_03234	0.56	-1.5
3,388,378	+		EFB2_03234	0.56	-0.1
3,388,378	+		EFB2_03234	0.56	+1.1
3,388,378	+		EFB2_03234	0.56	-2.8
3,388,379	-		EFB2_03234	0.57	-0.9
3,388,379	-		EFB2_03234	0.57	-0.0
3,388,379	-		EFB2_03234	0.57	-0.4
3,388,379	-		EFB2_03234	0.57	-0.9
3,388,379	-		EFB2_03234	0.57	+0.7
3,388,402	+		EFB2_03234	0.63	-1.2
3,388,402	+		EFB2_03234	0.63	+0.7
3,388,402	+		EFB2_03234	0.63	-1.0
3,388,403	-		EFB2_03234	0.63	-0.7
3,388,403	-		EFB2_03234	0.63	-0.4
3,388,403	-		EFB2_03234	0.63	-1.1
3,388,451	-		EFB2_03234	0.76	-0.7
3,388,473	-		EFB2_03234	0.81	+0.3
3,388,490	-		EFB2_03234	0.86	-1.4
3,388,504	+		EFB2_03234	0.90	+0.6
3,388,504	+		EFB2_03234	0.90	-2.4
3,388,504	+		EFB2_03234	0.90	+1.8
3,388,529	-				-0.3
3,388,559	+				+1.6
3,388,559	+				-0.2
3,388,619	+		EFB2_03235	0.15	-0.7
3,388,619	+		EFB2_03235	0.15	+0.7
3,388,619	+		EFB2_03235	0.15	-1.6
3,388,619	+		EFB2_03235	0.15	+0.4
3,388,619	+		EFB2_03235	0.15	-0.7
3,388,620	-		EFB2_03235	0.15	+2.3
3,388,623	+		EFB2_03235	0.15	+0.5
3,388,623	+		EFB2_03235	0.15	+1.9
3,388,623	+		EFB2_03235	0.15	-0.8
3,388,624	-		EFB2_03235	0.16	+1.1
3,388,624	-		EFB2_03235	0.16	+0.7