Strain Fitness in Escherichia fergusonii Becca around EFB2_02575

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,719,425	+				+0.7
2,719,467	+				+1.7
2,719,467	+				-1.4
2,719,467	+				+1.1
2,719,468	-				+1.0
2,719,468	-				-1.8
2,719,468	-				+0.2
2,719,468	-				+1.4
2,719,509	-				-0.1
2,719,527	+				-0.2
2,719,528	-				+0.4
2,719,528	-				+0.2
2,719,575	-				+0.6
2,719,721	-				+1.9
2,719,768	+				-0.0
2,719,834	+				+0.1
2,719,916	+		EFB2_02573	0.11	-0.9
2,719,916	+		EFB2_02573	0.11	+0.2
2,719,917	-		EFB2_02573	0.11	+0.4
2,719,917	-		EFB2_02573	0.11	+2.7
2,719,920	+		EFB2_02573	0.12	-0.4
2,719,920	+		EFB2_02573	0.12	+1.9
2,719,920	+		EFB2_02573	0.12	-0.9
2,719,920	+		EFB2_02573	0.12	+2.2
2,719,921	-		EFB2_02573	0.13	-0.9
2,719,921	-		EFB2_02573	0.13	-0.0
2,719,991	-		EFB2_02573	0.34	-1.7
2,720,013	+		EFB2_02573	0.41	-1.0
2,720,013	+		EFB2_02573	0.41	+1.2
2,720,013	+		EFB2_02573	0.41	-0.6
2,720,023	+		EFB2_02573	0.44	+3.1
2,720,089	-		EFB2_02573	0.64	+0.7
2,720,089	-		EFB2_02573	0.64	-0.4
2,720,089	-		EFB2_02573	0.64	+0.4
2,720,094	+		EFB2_02573	0.65	-0.6
2,720,094	+		EFB2_02573	0.65	-1.7
2,720,094	+		EFB2_02573	0.65	+1.0
2,720,095	-		EFB2_02573	0.66	-1.4
2,720,095	-		EFB2_02573	0.66	-0.4
2,720,095	-		EFB2_02573	0.66	+1.0
2,720,095	-		EFB2_02573	0.66	+2.6
2,720,150	+		EFB2_02573	0.83	+0.6
2,720,150	+		EFB2_02573	0.83	-0.0
2,720,150	+		EFB2_02573	0.83	+0.6
2,720,151	-		EFB2_02573	0.83	-2.1
2,720,151	-		EFB2_02573	0.83	+1.6
2,720,163	-		EFB2_02573	0.87	+1.6
2,720,193	-				-1.7
2,720,193	-				+2.5
2,720,193	-				+0.3
2,720,300	+		EFB2_02574	0.46	+0.2
2,720,300	+		EFB2_02574	0.46	-0.6
2,720,300	+		EFB2_02574	0.46	+0.2
2,720,301	-		EFB2_02574	0.47	-0.5
2,720,301	-		EFB2_02574	0.47	-1.1
2,720,301	-		EFB2_02574	0.47	-0.2
2,720,301	-		EFB2_02574	0.47	+0.2
2,720,301	-		EFB2_02574	0.47	-2.3
2,720,306	+		EFB2_02574	0.49	-0.9
2,720,306	+		EFB2_02574	0.49	+2.5
2,720,321	+		EFB2_02574	0.58	+1.1
2,720,321	+		EFB2_02574	0.58	+1.7
2,720,321	+		EFB2_02574	0.58	-1.5
2,720,321	+		EFB2_02574	0.58	-0.0
2,720,322	-		EFB2_02574	0.58	-0.6
2,720,322	-		EFB2_02574	0.58	+0.7
2,720,322	-		EFB2_02574	0.58	-1.9
2,720,322	-		EFB2_02574	0.58	-2.0
2,720,322	-		EFB2_02574	0.58	+0.8
2,720,322	-		EFB2_02574	0.58	+2.0
2,720,322	-		EFB2_02574	0.58	+0.4
2,720,348	+		EFB2_02574	0.72	+1.3
2,720,349	-		EFB2_02574	0.73	+0.2
2,720,363	+		EFB2_02574	0.80	-2.2
2,720,364	-		EFB2_02574	0.81	+0.8
2,720,364	-		EFB2_02574	0.81	-0.7
2,720,364	-		EFB2_02574	0.81	+0.3
2,720,364	-		EFB2_02574	0.81	+0.1
2,720,364	-		EFB2_02574	0.81	+0.2
2,720,479	+				-0.6
2,720,492	+				+1.5
2,720,532	+				-1.5
2,720,533	-				-0.6
2,720,533	-				-0.3
2,720,533	-				-0.3
2,720,533	-				-0.8
2,720,533	-				+1.1
2,720,533	-				-2.2
2,720,533	-				-1.2
2,720,533	-				+0.8
2,720,536	+				+0.5
2,720,537	-				+2.5
2,720,537	-				+0.7
2,720,544	-				+2.7
2,720,557	+				+0.1
2,720,557	+				+2.1
2,720,558	-				-2.7
2,720,558	-				-1.7
2,720,558	-				+2.9
2,720,575	+				-2.1
2,720,575	+				-1.8
2,720,576	-				-2.3
2,720,581	+				+1.4
2,720,581	+				+1.9
2,720,581	+				-0.9
2,720,581	+				+1.0
2,720,582	-				+0.2
2,720,582	-				+1.9
2,720,584	+				-1.4
2,720,584	+				+0.5
2,720,604	-				+0.1
2,720,604	-				+0.2
2,720,604	-				+0.6
2,720,604	-				+0.3
2,720,615	-				-1.6
2,720,615	-				-1.0
2,720,645	-				+0.5
2,720,653	+				+1.0
2,720,655	+				+3.3
2,720,656	-				+2.4
2,720,656	-				+0.4
2,720,668	+		EFB2_02575	0.10	+1.0
2,720,668	+		EFB2_02575	0.10	-0.8
2,720,668	+		EFB2_02575	0.10	+0.5
2,720,669	-		EFB2_02575	0.10	+2.0
2,720,689	+		EFB2_02575	0.11	+0.5
2,720,689	+		EFB2_02575	0.11	+1.5
2,720,690	-		EFB2_02575	0.11	-2.0
2,720,723	-		EFB2_02575	0.12	+1.4
2,720,749	+		EFB2_02575	0.13	+1.5
2,720,792	+		EFB2_02575	0.15	-0.0
2,720,793	-		EFB2_02575	0.15	+2.0
2,720,815	+		EFB2_02575	0.16	-0.9
2,720,815	+		EFB2_02575	0.16	+0.5
2,720,815	+		EFB2_02575	0.16	-1.5
2,720,815	+		EFB2_02575	0.16	+1.2
2,720,816	-		EFB2_02575	0.16	-2.5
2,720,816	-		EFB2_02575	0.16	+2.0
2,720,816	-		EFB2_02575	0.16	+0.5
2,720,816	-		EFB2_02575	0.16	+1.3
2,720,816	-		EFB2_02575	0.16	+1.3
2,720,816	-		EFB2_02575	0.16	+2.3
2,720,816	-		EFB2_02575	0.16	+0.6
2,720,816	-		EFB2_02575	0.16	+3.5
2,720,881	+		EFB2_02575	0.18	-1.0
2,720,881	+		EFB2_02575	0.18	-0.3
2,720,882	-		EFB2_02575	0.18	-1.2
2,720,917	+		EFB2_02575	0.20	-2.2
2,720,917	+		EFB2_02575	0.20	-1.5
2,720,918	-		EFB2_02575	0.20	-1.4
2,720,918	-		EFB2_02575	0.20	-1.0
2,720,918	-		EFB2_02575	0.20	-0.3
2,720,921	+		EFB2_02575	0.20	+0.2
2,720,921	+		EFB2_02575	0.20	+1.5
2,720,921	+		EFB2_02575	0.20	-0.8
2,720,921	+		EFB2_02575	0.20	-0.9
2,720,922	-		EFB2_02575	0.20	+0.2
2,720,922	-		EFB2_02575	0.20	-0.6
2,720,922	-		EFB2_02575	0.20	-0.5
2,720,922	-		EFB2_02575	0.20	+0.6
2,720,922	-		EFB2_02575	0.20	-0.6
2,720,922	-		EFB2_02575	0.20	-0.0
2,720,922	-		EFB2_02575	0.20	+0.5
2,720,922	-		EFB2_02575	0.20	+0.5
2,720,922	-		EFB2_02575	0.20	-0.8
2,720,922	-		EFB2_02575	0.20	-1.1
2,720,922	-		EFB2_02575	0.20	+1.4
2,720,922	-		EFB2_02575	0.20	+0.4
2,720,949	-		EFB2_02575	0.21	-0.8
2,720,963	-		EFB2_02575	0.21	-0.3
2,721,028	+		EFB2_02575	0.24	-2.2
2,721,029	-		EFB2_02575	0.24	-1.3
2,721,050	-		EFB2_02575	0.25	-0.0
2,721,050	-		EFB2_02575	0.25	+3.5
2,721,050	-		EFB2_02575	0.25	+1.4
2,721,073	+		EFB2_02575	0.26	+0.5
2,721,074	-		EFB2_02575	0.26	+3.1
2,721,074	-		EFB2_02575	0.26	+0.7
2,721,074	-		EFB2_02575	0.26	-1.5
2,721,154	+		EFB2_02575	0.29	+1.0
2,721,154	+		EFB2_02575	0.29	+1.2
2,721,154	+		EFB2_02575	0.29	-0.8
2,721,155	-		EFB2_02575	0.29	+0.8
2,721,155	-		EFB2_02575	0.29	+0.3
2,721,155	-		EFB2_02575	0.29	-0.5
2,721,155	-		EFB2_02575	0.29	+2.3
2,721,246	+		EFB2_02575	0.32	-0.8
2,721,246	+		EFB2_02575	0.32	+1.5
2,721,246	+		EFB2_02575	0.32	-0.0
2,721,246	+		EFB2_02575	0.32	-0.1
2,721,246	+		EFB2_02575	0.32	-1.7
2,721,247	-		EFB2_02575	0.32	-0.4
2,721,247	-		EFB2_02575	0.32	-2.0
2,721,247	-		EFB2_02575	0.32	+1.3
2,721,247	-		EFB2_02575	0.32	+2.3
2,721,247	-		EFB2_02575	0.32	+1.0
2,721,247	-		EFB2_02575	0.32	-1.4
2,721,247	-		EFB2_02575	0.32	-1.5
2,721,247	-		EFB2_02575	0.32	-1.5
2,721,247	-		EFB2_02575	0.32	+1.3
2,721,247	-		EFB2_02575	0.32	-0.8
2,721,247	-		EFB2_02575	0.32	-1.5
2,721,263	+		EFB2_02575	0.33	-2.3
2,721,263	+		EFB2_02575	0.33	+0.7
2,721,302	+		EFB2_02575	0.34	-0.3
2,721,319	+		EFB2_02575	0.35	-0.9
2,721,368	+		EFB2_02575	0.37	+0.9
2,721,369	-		EFB2_02575	0.37	+1.0
2,721,398	+		EFB2_02575	0.38	-0.1
2,721,398	+		EFB2_02575	0.38	-0.3
2,721,398	+		EFB2_02575	0.38	+0.2
2,721,398	+		EFB2_02575	0.38	-0.2
2,721,398	+		EFB2_02575	0.38	+0.5
2,721,399	-		EFB2_02575	0.38	+0.5
2,721,399	-		EFB2_02575	0.38	+1.4
2,721,399	-		EFB2_02575	0.38	+1.5
2,721,399	-		EFB2_02575	0.38	-2.7
2,721,399	-		EFB2_02575	0.38	+0.5
2,721,399	-		EFB2_02575	0.38	+1.9
2,721,399	-		EFB2_02575	0.38	-1.7
2,721,399	-		EFB2_02575	0.38	-0.9
2,721,399	-		EFB2_02575	0.38	+2.3
2,721,420	+		EFB2_02575	0.39	+0.5
2,721,420	+		EFB2_02575	0.39	+0.8
2,721,420	+		EFB2_02575	0.39	-1.5
2,721,420	+		EFB2_02575	0.39	-0.0
2,721,420	+		EFB2_02575	0.39	-1.7
2,721,421	-		EFB2_02575	0.39	-1.2
2,721,421	-		EFB2_02575	0.39	-0.5
2,721,421	-		EFB2_02575	0.39	+1.5
2,721,421	-		EFB2_02575	0.39	-0.8
2,721,576	-		EFB2_02575	0.45	+2.6
2,721,576	-		EFB2_02575	0.45	-0.0
2,721,591	-		EFB2_02575	0.45	+0.4
2,721,591	-		EFB2_02575	0.45	-1.0
2,721,601	+		EFB2_02575	0.46	+1.5
2,721,602	-		EFB2_02575	0.46	-1.5
2,721,606	+		EFB2_02575	0.46	-1.3
2,721,606	+		EFB2_02575	0.46	+0.5
2,721,607	-		EFB2_02575	0.46	+0.7
2,721,607	-		EFB2_02575	0.46	+1.7
2,721,607	-		EFB2_02575	0.46	+2.5
2,721,607	-		EFB2_02575	0.46	-0.0
2,721,607	-		EFB2_02575	0.46	+2.3
2,721,611	+		EFB2_02575	0.46	-1.2
2,721,611	+		EFB2_02575	0.46	-1.6
2,721,611	+		EFB2_02575	0.46	-1.0
2,721,611	+		EFB2_02575	0.46	-2.2
2,721,611	+		EFB2_02575	0.46	+0.2
2,721,612	-		EFB2_02575	0.46	-1.3
2,721,612	-		EFB2_02575	0.46	-0.1
2,721,612	-		EFB2_02575	0.46	+0.5
2,721,612	-		EFB2_02575	0.46	+1.4
2,721,612	-		EFB2_02575	0.46	+3.8
2,721,612	-		EFB2_02575	0.46	+2.8
2,721,612	-		EFB2_02575	0.46	+0.1
2,721,612	-		EFB2_02575	0.46	-1.5
2,721,706	+		EFB2_02575	0.50	+2.3
2,721,706	+		EFB2_02575	0.50	+0.8
2,721,706	+		EFB2_02575	0.50	+1.0
2,721,706	+		EFB2_02575	0.50	+0.0
2,721,706	+		EFB2_02575	0.50	+3.3
2,721,707	-		EFB2_02575	0.50	-2.7
2,721,707	-		EFB2_02575	0.50	+1.5
2,721,707	-		EFB2_02575	0.50	+1.2
2,721,707	-		EFB2_02575	0.50	+2.1
2,721,707	-		EFB2_02575	0.50	+0.8
2,721,781	+		EFB2_02575	0.52	+0.1
2,721,781	+		EFB2_02575	0.52	+2.3
2,721,782	-		EFB2_02575	0.53	+0.7
2,721,782	-		EFB2_02575	0.53	-0.5
2,721,867	-		EFB2_02575	0.56	+1.2
2,721,867	-		EFB2_02575	0.56	-1.5
2,721,867	-		EFB2_02575	0.56	-0.5
2,721,935	+		EFB2_02575	0.58	+0.6
2,721,935	+		EFB2_02575	0.58	-2.2
2,721,936	-		EFB2_02575	0.58	+1.4
2,721,936	-		EFB2_02575	0.58	-1.0
2,721,983	+		EFB2_02575	0.60	-1.6
2,721,983	+		EFB2_02575	0.60	+0.9
2,721,983	+		EFB2_02575	0.60	+1.2
2,721,983	+		EFB2_02575	0.60	-1.4
2,721,984	-		EFB2_02575	0.60	-3.3
2,721,984	-		EFB2_02575	0.60	-3.2
2,721,984	-		EFB2_02575	0.60	+1.4
2,721,984	-		EFB2_02575	0.60	-3.3
2,721,984	-		EFB2_02575	0.60	+0.5
2,721,996	-		EFB2_02575	0.61	+0.4
2,722,005	+		EFB2_02575	0.61	-0.1
2,722,005	+		EFB2_02575	0.61	+1.1
2,722,006	-		EFB2_02575	0.61	+2.0
2,722,007	+		EFB2_02575	0.61	-2.8
2,722,007	+		EFB2_02575	0.61	+3.2
2,722,007	+		EFB2_02575	0.61	+1.0
2,722,007	+		EFB2_02575	0.61	+0.4
2,722,007	+		EFB2_02575	0.61	+2.1
2,722,007	+		EFB2_02575	0.61	-0.4
2,722,007	+		EFB2_02575	0.61	+2.1
2,722,007	+		EFB2_02575	0.61	-1.3
2,722,008	-		EFB2_02575	0.61	-1.5
2,722,008	-		EFB2_02575	0.61	+1.7
2,722,008	-		EFB2_02575	0.61	+0.4
2,722,008	-		EFB2_02575	0.61	-0.2
2,722,008	-		EFB2_02575	0.61	-1.7
2,722,008	-		EFB2_02575	0.61	+2.0
2,722,008	-		EFB2_02575	0.61	-0.4
2,722,008	-		EFB2_02575	0.61	+0.2
2,722,008	-		EFB2_02575	0.61	-0.6
2,722,008	-		EFB2_02575	0.61	+0.2
2,722,008	-		EFB2_02575	0.61	-1.5
2,722,008	-		EFB2_02575	0.61	+1.4
2,722,008	-		EFB2_02575	0.61	+0.6
2,722,008	-		EFB2_02575	0.61	-2.2
2,722,008	-		EFB2_02575	0.61	-0.3
2,722,073	+		EFB2_02575	0.64	-0.3
2,722,074	-		EFB2_02575	0.64	-1.6
2,722,074	-		EFB2_02575	0.64	+0.1
2,722,074	-		EFB2_02575	0.64	+0.5
2,722,074	-		EFB2_02575	0.64	-1.0
2,722,074	-		EFB2_02575	0.64	+0.8
2,722,212	-		EFB2_02575	0.69	-1.1
2,722,228	-		EFB2_02575	0.69	-1.5
2,722,254	-		EFB2_02575	0.70	+0.0
2,722,254	-		EFB2_02575	0.70	-2.7
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