Strain Fitness in Escherichia fergusonii Becca around EFB2_02567

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,704,967	-				-2.4
2,704,977	-				-0.4
2,705,000	+				-2.0
2,705,001	-				-1.6
2,705,007	+				-0.6
2,705,007	+				-1.4
2,705,007	+				-0.0
2,705,008	-				-1.3
2,705,008	-				-0.1
2,705,008	-				+1.4
2,705,008	-				-0.4
2,705,008	-				-1.0
2,705,011	+				+1.8
2,705,011	+				-0.0
2,705,011	+				-1.4
2,705,011	+				+0.1
2,705,011	+				-0.2
2,705,011	+				+4.0
2,705,011	+				-1.4
2,705,012	-				-2.1
2,705,012	-				-1.1
2,705,012	-				+2.6
2,705,012	-				-2.3
2,705,012	-				-1.1
2,705,012	-				+0.3
2,705,012	-				+1.0
2,705,013	+				-1.4
2,705,013	+				-0.1
2,705,013	+				-0.3
2,705,013	+				+3.9
2,705,013	+				+1.7
2,705,013	+				-0.6
2,705,013	+				+1.9
2,705,013	+				+0.7
2,705,013	+				-1.0
2,705,013	+				+1.1
2,705,013	+				+1.3
2,705,014	-				-0.3
2,705,014	-				-0.2
2,705,014	-				-0.4
2,705,014	-				+2.4
2,705,014	-				+0.4
2,705,014	-				+0.1
2,705,014	-				-1.0
2,705,014	-				-0.3
2,705,014	-				+0.0
2,705,014	-				-1.8
2,705,018	+				-0.3
2,705,019	-				-1.3
2,705,075	-				+1.6
2,705,105	+				-1.3
2,705,105	+				+0.6
2,705,105	+				+0.0
2,705,106	-				-0.6
2,705,106	-				-0.4
2,705,143	+				+1.1
2,705,143	+				-0.3
2,705,143	+				+0.7
2,705,144	-				+0.2
2,705,144	-				-0.3
2,705,147	+				-0.5
2,705,147	+				-1.8
2,705,147	+				-1.0
2,705,147	+				+2.0
2,705,147	+				-1.4
2,705,147	+				-0.8
2,705,147	+				-1.4
2,705,148	-				+1.3
2,705,148	-				-0.6
2,705,148	-				+0.4
2,705,148	-				+1.2
2,705,148	-				-0.2
2,705,148	-				+0.5
2,705,148	-				-1.9
2,705,148	-				-2.1
2,705,149	+				+2.7
2,705,149	+				+0.8
2,705,149	+				+0.7
2,705,149	+				+0.6
2,705,149	+				-1.5
2,705,149	+				-1.3
2,705,171	+				+3.1
2,705,171	+				+1.1
2,705,171	+				+1.7
2,705,171	+				-1.5
2,705,171	+				-2.5
2,705,171	+				+1.6
2,705,171	+				+1.0
2,705,171	+				+1.6
2,705,171	+				+0.9
2,705,171	+				-2.2
2,705,171	+				+0.2
2,705,172	-				-1.8
2,705,172	-				-1.3
2,705,172	-				+0.7
2,705,172	-				+0.2
2,705,172	-				+1.2
2,705,172	-				+1.1
2,705,172	-				-0.9
2,705,174	+				-0.4
2,705,174	+				+1.9
2,705,174	+				-1.1
2,705,174	+				+3.1
2,705,174	+				-2.4
2,705,174	+				-1.4
2,705,174	+				-1.5
2,705,174	+				+2.1
2,705,174	+				-1.0
2,705,174	+				-2.4
2,705,174	+				+0.2
2,705,174	+				+0.6
2,705,174	+				+0.8
2,705,174	+				-1.3
2,705,174	+				-0.4
2,705,175	-				-1.0
2,705,175	-				-2.4
2,705,175	-				+2.2
2,705,175	-				+2.0
2,705,175	-				-2.4
2,705,175	-				+1.7
2,705,175	-				-0.4
2,705,175	-				+1.3
2,705,175	-				+1.7
2,705,175	-				+1.6
2,705,175	-				+1.2
2,705,175	-				+1.3
2,705,175	-				-0.0
2,705,175	-				+1.2
2,705,181	+				-0.6
2,705,203	+				-2.9
2,705,203	+				+0.6
2,705,214	+				-0.8
2,705,231	-		EFB2_02566	0.12	+1.1
2,705,411	+		EFB2_02566	0.41	+2.3
2,705,411	+		EFB2_02566	0.41	-0.8
2,705,412	-		EFB2_02566	0.41	+2.1
2,705,412	-		EFB2_02566	0.41	+4.1
2,705,412	-		EFB2_02566	0.41	-0.3
2,705,412	-		EFB2_02566	0.41	+0.4
2,705,433	+		EFB2_02566	0.45	+1.6
2,705,449	+		EFB2_02566	0.48	+0.2
2,705,449	+		EFB2_02566	0.48	+2.3
2,705,449	+		EFB2_02566	0.48	-0.8
2,705,449	+		EFB2_02566	0.48	-1.0
2,705,449	+		EFB2_02566	0.48	-0.9
2,705,449	+		EFB2_02566	0.48	-1.0
2,705,449	+		EFB2_02566	0.48	+0.6
2,705,450	-		EFB2_02566	0.48	-0.4
2,705,450	-		EFB2_02566	0.48	+1.9
2,705,450	-		EFB2_02566	0.48	-0.0
2,705,450	-		EFB2_02566	0.48	+0.2
2,705,450	-		EFB2_02566	0.48	+2.6
2,705,450	-		EFB2_02566	0.48	-2.6
2,705,450	-		EFB2_02566	0.48	+1.7
2,705,451	+		EFB2_02566	0.48	+2.6
2,705,451	+		EFB2_02566	0.48	+0.7
2,705,451	+		EFB2_02566	0.48	-0.3
2,705,451	+		EFB2_02566	0.48	+0.1
2,705,452	-		EFB2_02566	0.48	+0.2
2,705,452	-		EFB2_02566	0.48	-0.4
2,705,460	+		EFB2_02566	0.49	+1.6
2,705,482	+		EFB2_02566	0.53	+0.6
2,705,482	+		EFB2_02566	0.53	+2.7
2,705,483	-		EFB2_02566	0.53	+0.7
2,705,571	+		EFB2_02566	0.68	+0.4
2,705,595	+		EFB2_02566	0.72	+1.4
2,705,595	+		EFB2_02566	0.72	-1.8
2,705,595	+		EFB2_02566	0.72	+1.9
2,705,596	-		EFB2_02566	0.72	-0.4
2,705,596	-		EFB2_02566	0.72	+0.1
2,705,596	-		EFB2_02566	0.72	-2.2
2,705,626	+		EFB2_02566	0.77	+0.8
2,705,626	+		EFB2_02566	0.77	-0.9
2,705,626	+		EFB2_02566	0.77	-0.3
2,705,627	-		EFB2_02566	0.77	-2.6
2,705,627	-		EFB2_02566	0.77	-0.9
2,705,627	-		EFB2_02566	0.77	+2.1
2,705,627	-		EFB2_02566	0.77	-2.8
2,705,627	-		EFB2_02566	0.77	+1.6
2,705,627	-		EFB2_02566	0.77	+1.7
2,705,627	-		EFB2_02566	0.77	-1.5
2,705,627	-		EFB2_02566	0.77	+0.3
2,705,627	-		EFB2_02566	0.77	-0.3
2,705,627	-		EFB2_02566	0.77	+1.2
2,705,659	-		EFB2_02566	0.82	+2.0
2,705,751	+				+0.6
2,705,751	+				+2.7
2,705,751	+				-0.0
2,705,751	+				-0.8
2,705,751	+				-3.0
2,705,751	+				+0.3
2,705,752	-				+0.3
2,705,752	-				-0.4
2,705,752	-				+1.1
2,705,752	-				+2.2
2,705,752	-				-1.8
2,705,752	-				+1.4
2,705,752	-				-1.6
2,705,792	+				+2.1
2,705,793	-				+0.6
2,705,793	-				-1.9
2,705,793	-				-2.1
2,705,793	-				-1.5
2,705,793	-				-1.3
2,705,793	-				-1.1
2,705,793	-				+1.1
2,705,793	-				-0.8
2,705,793	-				-0.8
2,705,796	+				-1.3
2,705,796	+				+0.1
2,705,796	+				+2.1
2,705,796	+				-2.0
2,705,796	+				-0.4
2,705,797	-				-1.7
2,705,797	-				-0.0
2,705,822	-				-2.7
2,705,836	-				+1.6
2,705,865	-				-0.0
2,705,865	-				+2.3
2,705,865	-				+1.0
2,705,894	+				+0.1
2,705,894	+				+2.6
2,705,895	-				-1.0
2,705,895	-				-0.8
2,705,895	-				-0.4
2,705,895	-				-1.0
2,705,895	-				-2.2
2,705,895	-				+1.1
2,705,895	-				+0.9
2,705,895	-				-3.3
2,705,896	+				-0.4
2,705,896	+				-1.4
2,705,896	+				+1.1
2,705,896	+				-0.3
2,705,896	+				+1.3
2,705,896	+				+0.1
2,705,896	+				+0.2
2,705,896	+				-0.8
2,705,896	+				-1.1
2,705,896	+				-0.0
2,705,896	+				+0.2
2,705,896	+				-2.6
2,705,896	+				+1.0
2,705,897	-				-0.8
2,705,897	-				+0.1
2,705,897	-				-0.1
2,705,897	-				-2.5
2,705,897	-				+0.2
2,705,897	-				-0.0
2,705,897	-				-0.8
2,705,897	-				-2.4
2,705,897	-				+1.6
2,705,897	-				-1.0
2,705,897	-				-0.1
2,705,897	-				-0.0
2,705,900	+				+1.6
2,705,900	+				-0.3
2,705,900	+				-0.3
2,705,900	+				-0.5
2,705,900	+				+3.3
2,705,901	-				+0.5
2,705,901	-				-2.4
2,705,901	-				-1.1
2,705,921	+				+3.6
2,705,921	+				-0.9
2,705,921	+				-0.8
2,705,922	-				+0.5
2,705,922	-				+1.0
2,705,937	+				+0.7
2,705,937	+				-0.0
2,705,938	-				-0.7
2,705,938	-				-3.0
2,705,938	-				-0.4
2,705,938	-				+0.8
2,705,938	-				+0.1
2,705,938	-				-2.1
2,706,019	-		EFB2_02567	0.16	+0.5
2,706,088	-		EFB2_02567	0.21	-0.3
2,706,098	-		EFB2_02567	0.22	-1.0
2,706,170	+		EFB2_02567	0.28	+2.6
2,706,170	+		EFB2_02567	0.28	-0.4
2,706,170	+		EFB2_02567	0.28	-0.0
2,706,170	+		EFB2_02567	0.28	-0.5
2,706,171	-		EFB2_02567	0.28	-2.4
2,706,171	-		EFB2_02567	0.28	-2.4
2,706,171	-		EFB2_02567	0.28	-0.4
2,706,171	-		EFB2_02567	0.28	+0.9
2,706,171	-		EFB2_02567	0.28	-1.4
2,706,194	-		EFB2_02567	0.29	-0.3
2,706,194	-		EFB2_02567	0.29	-0.6
2,706,194	-		EFB2_02567	0.29	+0.7
2,706,194	-		EFB2_02567	0.29	-1.4
2,706,248	+		EFB2_02567	0.34	-1.4
2,706,248	+		EFB2_02567	0.34	-0.6
2,706,248	+		EFB2_02567	0.34	+0.9
2,706,249	-		EFB2_02567	0.34	+4.1
2,706,249	-		EFB2_02567	0.34	-1.3
2,706,249	-		EFB2_02567	0.34	+0.5
2,706,249	-		EFB2_02567	0.34	-0.8
2,706,318	-		EFB2_02567	0.39	-0.8
2,706,318	-		EFB2_02567	0.39	-2.0
2,706,372	+		EFB2_02567	0.43	-1.0
2,706,378	+		EFB2_02567	0.44	+0.8
2,706,381	+		EFB2_02567	0.44	+1.3
2,706,381	+		EFB2_02567	0.44	+0.5
2,706,381	+		EFB2_02567	0.44	-1.1
2,706,382	-		EFB2_02567	0.44	+0.1
2,706,393	+		EFB2_02567	0.45	-1.6
2,706,394	-		EFB2_02567	0.45	-2.4
2,706,394	-		EFB2_02567	0.45	+2.3
2,706,411	+		EFB2_02567	0.47	-0.5
2,706,411	+		EFB2_02567	0.47	+1.9
2,706,411	+		EFB2_02567	0.47	+1.1
2,706,412	-		EFB2_02567	0.47	-1.4
2,706,412	-		EFB2_02567	0.47	+1.3
2,706,412	-		EFB2_02567	0.47	-0.9
2,706,412	-		EFB2_02567	0.47	-1.0
2,706,423	+		EFB2_02567	0.48	-1.7
2,706,423	+		EFB2_02567	0.48	+1.0
2,706,423	+		EFB2_02567	0.48	-0.3
2,706,424	-		EFB2_02567	0.48	+1.4
2,706,424	-		EFB2_02567	0.48	-2.5
2,706,429	+		EFB2_02567	0.48	+0.8
2,706,429	+		EFB2_02567	0.48	-2.0
2,706,429	+		EFB2_02567	0.48	-0.3
2,706,429	+		EFB2_02567	0.48	-0.0
2,706,429	+		EFB2_02567	0.48	-1.0
2,706,429	+		EFB2_02567	0.48	+1.6
2,706,430	-		EFB2_02567	0.48	+3.4
2,706,430	-		EFB2_02567	0.48	+1.1
2,706,430	-		EFB2_02567	0.48	-0.3
2,706,463	-		EFB2_02567	0.51	-0.4
2,706,469	+		EFB2_02567	0.51	-0.6
2,706,469	+		EFB2_02567	0.51	-1.6
2,706,469	+		EFB2_02567	0.51	+0.2
2,706,469	+		EFB2_02567	0.51	+0.4
2,706,469	+		EFB2_02567	0.51	+0.2
2,706,469	+		EFB2_02567	0.51	+2.1
2,706,469	+		EFB2_02567	0.51	-0.5
2,706,470	-		EFB2_02567	0.51	+0.2
2,706,470	-		EFB2_02567	0.51	-1.0
2,706,470	-		EFB2_02567	0.51	-1.8
2,706,470	-		EFB2_02567	0.51	-1.9
2,706,470	-		EFB2_02567	0.51	-2.4
2,706,470	-		EFB2_02567	0.51	-0.7
2,706,470	-		EFB2_02567	0.51	+0.9
2,706,470	-		EFB2_02567	0.51	+1.2
2,706,470	-		EFB2_02567	0.51	+1.3
2,706,470	-		EFB2_02567	0.51	+1.0
2,706,470	-		EFB2_02567	0.51	-2.2
2,706,480	+		EFB2_02567	0.52	-2.3
2,706,480	+		EFB2_02567	0.52	-0.0
2,706,481	-		EFB2_02567	0.52	-0.8
2,706,481	-		EFB2_02567	0.52	-0.3
2,706,549	+		EFB2_02567	0.57	-0.3
2,706,549	+		EFB2_02567	0.57	-0.9
2,706,549	+		EFB2_02567	0.57	+0.2
2,706,549	+		EFB2_02567	0.57	+0.5
2,706,549	+		EFB2_02567	0.57	-0.3
2,706,549	+		EFB2_02567	0.57	+1.8
2,706,550	-		EFB2_02567	0.58	-0.8
2,706,550	-		EFB2_02567	0.58	-0.5
2,706,550	-		EFB2_02567	0.58	+0.8
2,706,550	-		EFB2_02567	0.58	+2.2
2,706,550	-		EFB2_02567	0.58	-0.0
2,706,550	-		EFB2_02567	0.58	-0.9
2,706,550	-		EFB2_02567	0.58	+0.2
2,706,550	-		EFB2_02567	0.58	+1.1
2,706,550	-		EFB2_02567	0.58	+0.5
2,706,554	+		EFB2_02567	0.58	+3.2
2,706,554	+		EFB2_02567	0.58	-0.6
2,706,554	+		EFB2_02567	0.58	-0.5
2,706,554	+		EFB2_02567	0.58	+0.9
2,706,554	+		EFB2_02567	0.58	+1.3
2,706,554	+		EFB2_02567	0.58	+2.1
2,706,554	+		EFB2_02567	0.58	+1.2
2,706,554	+		EFB2_02567	0.58	-0.9
2,706,554	+		EFB2_02567	0.58	-1.6
2,706,554	+		EFB2_02567	0.58	+0.2
2,706,554	+		EFB2_02567	0.58	+0.3
2,706,554	+		EFB2_02567	0.58	+1.0
2,706,555	-		EFB2_02567	0.58	-0.4
2,706,555	-		EFB2_02567	0.58	+1.9
2,706,555	-		EFB2_02567	0.58	-2.9
2,706,555	-		EFB2_02567	0.58	-0.0
2,706,555	-		EFB2_02567	0.58	+0.4
2,706,555	-		EFB2_02567	0.58	+1.0
2,706,555	-		EFB2_02567	0.58	+1.0
2,706,555	-		EFB2_02567	0.58	+1.2
2,706,555	-		EFB2_02567	0.58	+0.6
2,706,555	-		EFB2_02567	0.58	-0.5
2,706,555	-		EFB2_02567	0.58	+0.3
2,706,558	+		EFB2_02567	0.58	+1.0
2,706,559	-		EFB2_02567	0.58	-1.1
2,706,584	+		EFB2_02567	0.60	+1.7
2,706,585	-		EFB2_02567	0.60	+0.2
2,706,585	-		EFB2_02567	0.60	-1.6
2,706,627	+		EFB2_02567	0.64	-0.0
2,706,628	-		EFB2_02567	0.64	-2.7
2,706,650	+		EFB2_02567	0.65	+0.2
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