Strain Fitness in Escherichia fergusonii Becca around EFB2_02414

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,553,912	+		EFB2_02413	0.34	+0.3
2,553,912	+		EFB2_02413	0.34	-0.1
2,553,939	+		EFB2_02413	0.36	+1.5
2,553,939	+		EFB2_02413	0.36	-1.1
2,553,939	+		EFB2_02413	0.36	-0.4
2,553,939	+		EFB2_02413	0.36	-2.8
2,553,939	+		EFB2_02413	0.36	-1.9
2,553,978	+		EFB2_02413	0.39	+0.2
2,553,978	+		EFB2_02413	0.39	-0.8
2,553,978	+		EFB2_02413	0.39	+0.0
2,553,978	+		EFB2_02413	0.39	+0.8
2,553,979	-		EFB2_02413	0.39	+1.6
2,553,979	-		EFB2_02413	0.39	-1.9
2,553,997	-		EFB2_02413	0.40	+0.6
2,554,026	+		EFB2_02413	0.42	+3.2
2,554,026	+		EFB2_02413	0.42	+1.1
2,554,026	+		EFB2_02413	0.42	+0.3
2,554,026	+		EFB2_02413	0.42	+0.2
2,554,026	+		EFB2_02413	0.42	+0.6
2,554,026	+		EFB2_02413	0.42	+0.6
2,554,026	+		EFB2_02413	0.42	+1.9
2,554,027	-		EFB2_02413	0.42	+1.6
2,554,027	-		EFB2_02413	0.42	-0.6
2,554,027	-		EFB2_02413	0.42	+1.0
2,554,027	-		EFB2_02413	0.42	-0.4
2,554,027	-		EFB2_02413	0.42	-0.6
2,554,027	-		EFB2_02413	0.42	+2.3
2,554,027	-		EFB2_02413	0.42	+0.5
2,554,028	+		EFB2_02413	0.42	-1.4
2,554,028	+		EFB2_02413	0.42	-0.8
2,554,028	+		EFB2_02413	0.42	-1.3
2,554,028	+		EFB2_02413	0.42	-1.9
2,554,029	-		EFB2_02413	0.42	-2.6
2,554,066	-		EFB2_02413	0.45	+3.6
2,554,066	-		EFB2_02413	0.45	-2.3
2,554,077	+		EFB2_02413	0.46	-1.9
2,554,077	+		EFB2_02413	0.46	+0.9
2,554,155	+		EFB2_02413	0.51	+1.0
2,554,156	-		EFB2_02413	0.52	-1.8
2,554,156	-		EFB2_02413	0.52	-0.8
2,554,156	-		EFB2_02413	0.52	-0.4
2,554,227	-		EFB2_02413	0.57	+0.8
2,554,249	+		EFB2_02413	0.58	-0.3
2,554,249	+		EFB2_02413	0.58	-1.6
2,554,250	-		EFB2_02413	0.58	+0.5
2,554,378	+		EFB2_02413	0.68	+2.3
2,554,378	+		EFB2_02413	0.68	-1.6
2,554,378	+		EFB2_02413	0.68	+1.2
2,554,378	+		EFB2_02413	0.68	-1.3
2,554,380	+		EFB2_02413	0.68	+0.2
2,554,380	+		EFB2_02413	0.68	-1.6
2,554,380	+		EFB2_02413	0.68	-1.0
2,554,381	-		EFB2_02413	0.68	+0.6
2,554,381	-		EFB2_02413	0.68	+1.8
2,554,383	+		EFB2_02413	0.68	+0.3
2,554,383	+		EFB2_02413	0.68	+0.3
2,554,384	-		EFB2_02413	0.68	-0.3
2,554,384	-		EFB2_02413	0.68	+3.7
2,554,384	-		EFB2_02413	0.68	+1.0
2,554,386	+		EFB2_02413	0.68	-1.9
2,554,387	-		EFB2_02413	0.68	+0.8
2,554,392	+		EFB2_02413	0.69	+0.9
2,554,392	+		EFB2_02413	0.69	-0.0
2,554,393	-		EFB2_02413	0.69	-1.0
2,554,429	-		EFB2_02413	0.71	-1.0
2,554,436	+		EFB2_02413	0.72	+0.5
2,554,436	+		EFB2_02413	0.72	+0.1
2,554,437	-		EFB2_02413	0.72	-1.4
2,554,437	-		EFB2_02413	0.72	+1.3
2,554,437	-		EFB2_02413	0.72	+3.3
2,554,440	+		EFB2_02413	0.72	+1.3
2,554,441	-		EFB2_02413	0.72	+2.8
2,554,441	-		EFB2_02413	0.72	-1.6
2,554,447	+		EFB2_02413	0.73	+1.0
2,554,448	-		EFB2_02413	0.73	+2.4
2,554,448	-		EFB2_02413	0.73	+1.0
2,554,464	+		EFB2_02413	0.74	-0.5
2,554,488	+		EFB2_02413	0.76	+0.1
2,554,488	+		EFB2_02413	0.76	-1.4
2,554,489	-		EFB2_02413	0.76	-1.6
2,554,489	-		EFB2_02413	0.76	-0.2
2,554,489	-		EFB2_02413	0.76	+0.1
2,554,508	+		EFB2_02413	0.77	+0.5
2,554,575	+		EFB2_02413	0.82	-2.0
2,554,620	+		EFB2_02413	0.85	+1.6
2,554,621	-		EFB2_02413	0.86	+2.6
2,554,674	+		EFB2_02413	0.89	+0.6
2,554,674	+		EFB2_02413	0.89	+0.0
2,554,674	+		EFB2_02413	0.89	+1.7
2,554,687	+				-0.2
2,554,687	+				+0.3
2,554,687	+				+1.2
2,554,687	+				-1.6
2,554,687	+				-1.8
2,554,687	+				+0.5
2,554,687	+				+0.9
2,554,688	-				-0.4
2,554,688	-				-1.4
2,554,688	-				+1.6
2,554,745	+				-0.1
2,554,745	+				-1.1
2,554,746	-				+0.7
2,554,787	+				-0.7
2,554,787	+				+0.1
2,554,787	+				-2.5
2,554,787	+				+0.1
2,554,787	+				-0.1
2,554,787	+				-0.7
2,554,787	+				-0.4
2,554,787	+				-0.4
2,554,787	+				+0.4
2,554,787	+				+0.8
2,554,788	-				-0.6
2,554,816	+				-0.6
2,554,816	+				+1.7
2,554,837	+				+1.0
2,554,861	+				-0.4
2,554,861	+				+0.0
2,554,862	-				-1.3
2,554,862	-				-0.9
2,554,862	-				-0.1
2,554,863	+				+2.2
2,554,864	-				+1.3
2,554,875	+				-0.6
2,554,875	+				-1.1
2,554,875	+				+3.0
2,554,875	+				-2.8
2,554,876	-				-0.7
2,554,876	-				-2.3
2,554,876	-				+0.3
2,554,876	-				-0.9
2,554,883	+				+2.4
2,554,883	+				-1.6
2,554,885	+				+1.8
2,554,886	-				+0.4
2,554,889	+				+0.4
2,554,895	+				+0.0
2,554,923	-				-1.0
2,554,957	+				+2.4
2,554,957	+				+1.1
2,554,960	+				-0.5
2,555,024	+				+1.0
2,555,069	+		EFB2_02414	0.11	+1.3
2,555,069	+		EFB2_02414	0.11	+0.0
2,555,069	+		EFB2_02414	0.11	+0.8
2,555,070	-		EFB2_02414	0.11	+2.6
2,555,070	-		EFB2_02414	0.11	-0.6
2,555,070	-		EFB2_02414	0.11	+1.6
2,555,070	-		EFB2_02414	0.11	+0.6
2,555,070	-		EFB2_02414	0.11	+1.6
2,555,070	-		EFB2_02414	0.11	+1.2
2,555,082	+		EFB2_02414	0.12	+1.0
2,555,082	+		EFB2_02414	0.12	+0.7
2,555,083	-		EFB2_02414	0.12	+0.6
2,555,112	+		EFB2_02414	0.14	-1.4
2,555,112	+		EFB2_02414	0.14	+0.0
2,555,125	+		EFB2_02414	0.15	+1.6
2,555,125	+		EFB2_02414	0.15	+1.1
2,555,132	+		EFB2_02414	0.15	-2.1
2,555,133	-		EFB2_02414	0.15	-1.5
2,555,134	+		EFB2_02414	0.16	+0.9
2,555,134	+		EFB2_02414	0.16	+0.2
2,555,135	-		EFB2_02414	0.16	+2.0
2,555,211	+		EFB2_02414	0.21	+1.0
2,555,211	+		EFB2_02414	0.21	+2.0
2,555,211	+		EFB2_02414	0.21	+1.3
2,555,211	+		EFB2_02414	0.21	-0.6
2,555,212	-		EFB2_02414	0.21	-1.1
2,555,212	-		EFB2_02414	0.21	+2.6
2,555,212	-		EFB2_02414	0.21	+1.5
2,555,212	-		EFB2_02414	0.21	-1.9
2,555,212	-		EFB2_02414	0.21	-0.5
2,555,212	-		EFB2_02414	0.21	+0.9
2,555,212	-		EFB2_02414	0.21	-0.6
2,555,221	-		EFB2_02414	0.21	-1.0
2,555,319	+		EFB2_02414	0.28	+1.6
2,555,319	+		EFB2_02414	0.28	+0.0
2,555,320	-		EFB2_02414	0.28	+2.2
2,555,413	+		EFB2_02414	0.35	+0.2
2,555,437	+		EFB2_02414	0.36	+2.6
2,555,437	+		EFB2_02414	0.36	+1.9
2,555,438	-		EFB2_02414	0.36	+1.4
2,555,438	-		EFB2_02414	0.36	+3.6
2,555,545	+		EFB2_02414	0.44	+1.4
2,555,578	+		EFB2_02414	0.46	-1.5
2,555,578	+		EFB2_02414	0.46	+2.1
2,555,578	+		EFB2_02414	0.46	-1.6
2,555,579	-		EFB2_02414	0.46	+0.3
2,555,579	-		EFB2_02414	0.46	-0.2
2,555,603	-		EFB2_02414	0.48	+2.6
2,555,603	-		EFB2_02414	0.48	+0.6
2,555,679	+		EFB2_02414	0.53	+0.3
2,555,682	+		EFB2_02414	0.53	+0.4
2,555,682	+		EFB2_02414	0.53	-2.1
2,555,682	+		EFB2_02414	0.53	+1.5
2,555,682	+		EFB2_02414	0.53	-1.1
2,555,683	-		EFB2_02414	0.53	-0.6
2,555,683	-		EFB2_02414	0.53	-0.4
2,555,689	+		EFB2_02414	0.54	-1.4
2,555,756	+		EFB2_02414	0.58	-1.0
2,555,756	+		EFB2_02414	0.58	+1.7
2,555,756	+		EFB2_02414	0.58	+0.3
2,555,776	+		EFB2_02414	0.59	-1.7
2,555,776	+		EFB2_02414	0.59	-2.4
2,555,776	+		EFB2_02414	0.59	-1.5
2,555,776	+		EFB2_02414	0.59	+1.0
2,555,808	-		EFB2_02414	0.62	+1.4
2,555,808	-		EFB2_02414	0.62	+0.3
2,555,808	-		EFB2_02414	0.62	-0.7
2,555,839	+		EFB2_02414	0.64	-1.1
2,555,840	-		EFB2_02414	0.64	+1.0
2,555,840	-		EFB2_02414	0.64	+0.5
2,555,879	+		EFB2_02414	0.67	+0.2
2,555,879	+		EFB2_02414	0.67	-0.4
2,555,879	+		EFB2_02414	0.67	-0.4
2,555,880	-		EFB2_02414	0.67	+3.2
2,555,881	+		EFB2_02414	0.67	-1.1
2,555,881	+		EFB2_02414	0.67	-2.3
2,555,881	+		EFB2_02414	0.67	+0.6
2,555,881	+		EFB2_02414	0.67	-1.5
2,555,881	+		EFB2_02414	0.67	+3.0
2,555,881	+		EFB2_02414	0.67	-0.4
2,555,881	+		EFB2_02414	0.67	+0.2
2,555,881	+		EFB2_02414	0.67	-2.0
2,555,886	+		EFB2_02414	0.67	-0.5
2,555,942	+		EFB2_02414	0.71	-0.4
2,555,955	+		EFB2_02414	0.72	-2.0
2,555,966	+		EFB2_02414	0.72	+0.3
2,555,966	+		EFB2_02414	0.72	+0.8
2,555,966	+		EFB2_02414	0.72	-1.3
2,555,966	+		EFB2_02414	0.72	-0.6
2,555,968	+		EFB2_02414	0.73	+0.2
2,555,968	+		EFB2_02414	0.73	-1.1
2,555,968	+		EFB2_02414	0.73	+1.6
2,555,968	+		EFB2_02414	0.73	+1.0
2,555,968	+		EFB2_02414	0.73	+2.7
2,555,969	-		EFB2_02414	0.73	-0.6
2,555,969	-		EFB2_02414	0.73	-0.7
2,555,969	-		EFB2_02414	0.73	-1.0
2,555,982	+		EFB2_02414	0.74	+1.2
2,555,983	-		EFB2_02414	0.74	+3.3
2,556,120	-		EFB2_02414	0.83	+3.4
2,556,120	-		EFB2_02414	0.83	+2.6
2,556,174	+		EFB2_02414	0.87	+2.6
2,556,174	+		EFB2_02414	0.87	+0.5
2,556,175	-		EFB2_02414	0.87	+0.5
2,556,202	+		EFB2_02414	0.89	-1.6
2,556,203	-		EFB2_02414	0.89	-0.7
2,556,203	-		EFB2_02414	0.89	-0.3
2,556,244	+				-0.4
2,556,244	+				+0.3
2,556,245	-				-1.4
2,556,267	+				+0.6
2,556,277	+				-2.6
2,556,277	+				-0.1
2,556,277	+				-0.7
2,556,277	+				+0.0
2,556,277	+				+0.0
2,556,277	+				-1.3
2,556,278	-				+0.3
2,556,278	-				-1.1
2,556,286	+				+1.8
2,556,308	+				-1.0
2,556,308	+				+2.3
2,556,308	+				+1.0
2,556,308	+				-0.2
2,556,308	+				-2.0
2,556,308	+				-1.3
2,556,308	+				-2.1
2,556,308	+				+0.0
2,556,308	+				+1.1
2,556,308	+				+1.3
2,556,309	-				-1.3
2,556,318	+				-1.4
2,556,322	-				+0.1
2,556,353	+				+1.6
2,556,353	+				+1.8
2,556,354	-				+0.3
2,556,404	+				+0.9
2,556,404	+				+1.0
2,556,404	+				-1.6
2,556,404	+				-1.9
2,556,404	+				+1.4
2,556,405	-				+1.1
2,556,405	-				-1.6
2,556,405	-				+1.6
2,556,405	-				+0.6
2,556,405	-				+1.0
2,556,405	-				+1.6
2,556,405	-				+1.7
2,556,466	+		EFB2_02415	0.31	+0.7
2,556,466	+		EFB2_02415	0.31	+0.6
2,556,467	-		EFB2_02415	0.31	-0.7
2,556,467	-		EFB2_02415	0.31	-0.9
2,556,467	-		EFB2_02415	0.31	+1.6
2,556,467	-		EFB2_02415	0.31	-0.7
2,556,467	-		EFB2_02415	0.31	+0.8
2,556,555	+		EFB2_02415	0.75	-0.2
2,556,556	-		EFB2_02415	0.75	+2.6
2,556,556	-		EFB2_02415	0.75	+2.5
2,556,556	-		EFB2_02415	0.75	+0.9
2,556,589	-				+0.8
2,556,597	-				+2.6
2,556,597	-				-0.4
2,556,606	+				+0.6
2,556,606	+				+0.0
2,556,606	+				+0.3
2,556,607	-				+0.3
2,556,607	-				-0.4
2,556,607	-				-1.3
2,556,607	-				-1.3
2,556,607	-				+0.9
2,556,607	-				-0.9
2,556,607	-				+0.5
2,556,607	-				-2.3
2,556,629	+				-0.9
2,556,658	+				+0.6
2,556,658	+				+0.6
2,556,658	+				-0.7
2,556,659	-				-0.2
2,556,659	-				+3.6
2,556,659	-				-0.9
2,556,660	+				-0.9
2,556,660	+				+2.6
2,556,660	+				+0.0
2,556,660	+				+1.1
2,556,661	-				+1.0
2,556,661	-				-1.5
2,556,661	-				-0.1
2,556,661	-				+0.1
2,556,661	-				-0.0
2,556,661	-				+1.5
2,556,661	-				+0.0
2,556,661	-				-2.3
2,556,661	-				-0.7
2,556,664	+				+0.3
2,556,664	+				-0.4
2,556,664	+				-2.5
2,556,665	-				-1.0
2,556,665	-				+0.4
2,556,682	+				-0.6
2,556,734	+				+1.2
2,556,734	+				-0.9
2,556,734	+				-1.4
2,556,735	-				+1.1
2,556,735	-				+3.0
2,556,735	-				+1.5
2,556,735	-				-1.2
2,556,735	-				-2.2
2,556,735	-				-1.3
2,556,735	-				-1.5
2,556,735	-				+2.0
2,556,735	-				+0.0
2,556,784	+				+0.5
2,556,785	-				-1.6
2,556,785	-				+2.4
2,556,785	-				-0.7
2,556,874	-		EFB2_02416	0.13	-0.2
2,556,912	-		EFB2_02416	0.19	-1.3
2,556,912	-		EFB2_02416	0.19	+0.0
2,556,965	+		EFB2_02416	0.26	+1.3
2,556,966	-		EFB2_02416	0.27	+1.2
2,556,966	-		EFB2_02416	0.27	-1.1
2,556,966	-		EFB2_02416	0.27	+0.6
2,556,966	-		EFB2_02416	0.27	+0.0
2,556,966	-		EFB2_02416	0.27	+0.9
2,556,966	-		EFB2_02416	0.27	+2.4
2,556,967	+		EFB2_02416	0.27	+1.0
2,556,967	+		EFB2_02416	0.27	+1.3
2,556,968	-		EFB2_02416	0.27	-1.0
2,556,968	-		EFB2_02416	0.27	+0.6
2,557,249	+		EFB2_02416	0.68	+2.0
2,557,249	+		EFB2_02416	0.68	+2.6
2,557,250	-		EFB2_02416	0.68	+0.3
2,557,250	-		EFB2_02416	0.68	+1.0
2,557,250	-		EFB2_02416	0.68	-1.7
2,557,250	-		EFB2_02416	0.68	+0.0
2,557,250	-		EFB2_02416	0.68	+1.6
2,557,250	-		EFB2_02416	0.68	+1.0
2,557,250	-		EFB2_02416	0.68	+0.6
2,557,298	+		EFB2_02416	0.75	+1.8
2,557,302	-		EFB2_02416	0.76	+0.6
2,557,302	-		EFB2_02416	0.76	+0.6