Strain Fitness in Escherichia fergusonii Becca around EFB2_01975

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,133,283	+		EFB2_01974	0.40	+1.3
2,133,296	-		EFB2_01974	0.41	+1.6
2,133,296	-		EFB2_01974	0.41	-1.8
2,133,296	-		EFB2_01974	0.41	-0.8
2,133,297	+		EFB2_01974	0.41	-3.4
2,133,297	+		EFB2_01974	0.41	-0.8
2,133,297	+		EFB2_01974	0.41	-0.0
2,133,297	+		EFB2_01974	0.41	+1.2
2,133,297	+		EFB2_01974	0.41	+0.9
2,133,297	+		EFB2_01974	0.41	+0.7
2,133,297	+		EFB2_01974	0.41	+0.0
2,133,297	+		EFB2_01974	0.41	+1.1
2,133,297	+		EFB2_01974	0.41	+1.3
2,133,297	+		EFB2_01974	0.41	-2.5
2,133,297	+		EFB2_01974	0.41	+0.2
2,133,298	-		EFB2_01974	0.41	+1.1
2,133,298	-		EFB2_01974	0.41	+0.4
2,133,298	-		EFB2_01974	0.41	-1.0
2,133,298	-		EFB2_01974	0.41	-0.2
2,133,298	-		EFB2_01974	0.41	-1.5
2,133,310	+		EFB2_01974	0.42	-2.3
2,133,310	+		EFB2_01974	0.42	-1.8
2,133,310	+		EFB2_01974	0.42	-0.7
2,133,310	+		EFB2_01974	0.42	-1.1
2,133,310	+		EFB2_01974	0.42	+0.1
2,133,310	+		EFB2_01974	0.42	+1.0
2,133,310	+		EFB2_01974	0.42	+0.7
2,133,310	+		EFB2_01974	0.42	-1.0
2,133,311	-		EFB2_01974	0.42	-0.8
2,133,311	-		EFB2_01974	0.42	+1.1
2,133,311	-		EFB2_01974	0.42	-0.8
2,133,311	-		EFB2_01974	0.42	+0.7
2,133,311	-		EFB2_01974	0.42	+3.1
2,133,320	-		EFB2_01974	0.42	+0.8
2,133,396	+		EFB2_01974	0.47	+0.7
2,133,396	+		EFB2_01974	0.47	+0.9
2,133,396	+		EFB2_01974	0.47	+0.8
2,133,432	+		EFB2_01974	0.50	-0.8
2,133,432	+		EFB2_01974	0.50	+1.2
2,133,432	+		EFB2_01974	0.50	-0.3
2,133,432	+		EFB2_01974	0.50	+1.0
2,133,432	+		EFB2_01974	0.50	+1.0
2,133,432	+		EFB2_01974	0.50	+1.5
2,133,433	-		EFB2_01974	0.50	-0.0
2,133,433	-		EFB2_01974	0.50	-0.7
2,133,433	-		EFB2_01974	0.50	-0.7
2,133,486	+		EFB2_01974	0.54	+0.3
2,133,486	+		EFB2_01974	0.54	+0.6
2,133,486	+		EFB2_01974	0.54	+0.5
2,133,486	+		EFB2_01974	0.54	-0.7
2,133,486	+		EFB2_01974	0.54	+0.6
2,133,486	+		EFB2_01974	0.54	-2.3
2,133,486	+		EFB2_01974	0.54	-2.4
2,133,486	+		EFB2_01974	0.54	+2.0
2,133,487	-		EFB2_01974	0.54	-1.2
2,133,487	-		EFB2_01974	0.54	+1.9
2,133,487	-		EFB2_01974	0.54	-1.2
2,133,487	-		EFB2_01974	0.54	-0.3
2,133,487	-		EFB2_01974	0.54	+0.7
2,133,487	-		EFB2_01974	0.54	-2.5
2,133,487	-		EFB2_01974	0.54	+0.7
2,133,487	-		EFB2_01974	0.54	-0.5
2,133,503	+		EFB2_01974	0.55	+0.0
2,133,503	+		EFB2_01974	0.55	+0.0
2,133,503	+		EFB2_01974	0.55	-2.7
2,133,504	-		EFB2_01974	0.55	-1.8
2,133,504	-		EFB2_01974	0.55	+0.7
2,133,504	-		EFB2_01974	0.55	+0.7
2,133,504	-		EFB2_01974	0.55	+0.3
2,133,507	+		EFB2_01974	0.55	+2.2
2,133,507	+		EFB2_01974	0.55	-2.2
2,133,507	+		EFB2_01974	0.55	+0.3
2,133,541	+		EFB2_01974	0.57	-0.4
2,133,541	+		EFB2_01974	0.57	+2.6
2,133,541	+		EFB2_01974	0.57	+2.3
2,133,542	-		EFB2_01974	0.57	-1.1
2,133,542	-		EFB2_01974	0.57	+2.3
2,133,542	-		EFB2_01974	0.57	+1.2
2,133,542	-		EFB2_01974	0.57	-2.2
2,133,542	-		EFB2_01974	0.57	+0.8
2,133,542	-		EFB2_01974	0.57	-1.1
2,133,542	-		EFB2_01974	0.57	+1.0
2,133,542	-		EFB2_01974	0.57	+1.2
2,133,554	+		EFB2_01974	0.58	+0.4
2,133,554	+		EFB2_01974	0.58	-2.0
2,133,554	+		EFB2_01974	0.58	-0.3
2,133,583	-		EFB2_01974	0.60	+0.5
2,133,588	+		EFB2_01974	0.61	+1.0
2,133,652	+		EFB2_01974	0.65	+1.3
2,133,652	+		EFB2_01974	0.65	+0.5
2,133,652	+		EFB2_01974	0.65	-1.4
2,133,653	-		EFB2_01974	0.65	+0.3
2,133,661	+		EFB2_01974	0.66	+2.3
2,133,661	+		EFB2_01974	0.66	-0.5
2,133,662	-		EFB2_01974	0.66	+0.4
2,133,662	-		EFB2_01974	0.66	+1.2
2,133,683	+		EFB2_01974	0.67	+0.1
2,133,683	+		EFB2_01974	0.67	+0.1
2,133,684	-		EFB2_01974	0.67	+1.0
2,133,693	+		EFB2_01974	0.68	-0.9
2,133,693	+		EFB2_01974	0.68	-3.0
2,133,702	+		EFB2_01974	0.68	+0.1
2,133,709	+		EFB2_01974	0.69	-1.4
2,133,709	+		EFB2_01974	0.69	+0.6
2,133,709	+		EFB2_01974	0.69	+0.4
2,133,709	+		EFB2_01974	0.69	+1.3
2,133,709	+		EFB2_01974	0.69	-0.7
2,133,710	-		EFB2_01974	0.69	+0.0
2,133,710	-		EFB2_01974	0.69	-0.8
2,133,710	-		EFB2_01974	0.69	-1.8
2,133,729	+		EFB2_01974	0.70	-0.5
2,133,733	+		EFB2_01974	0.70	-1.7
2,133,733	+		EFB2_01974	0.70	+0.3
2,133,733	+		EFB2_01974	0.70	+0.4
2,133,745	-		EFB2_01974	0.71	+1.3
2,133,814	+		EFB2_01974	0.76	-0.3
2,133,815	-		EFB2_01974	0.76	-0.1
2,133,842	+		EFB2_01974	0.78	-1.5
2,133,843	-		EFB2_01974	0.78	+0.5
2,133,843	-		EFB2_01974	0.78	+0.3
2,133,843	-		EFB2_01974	0.78	-1.4
2,133,843	-		EFB2_01974	0.78	+0.3
2,133,855	+		EFB2_01974	0.79	+0.2
2,133,855	+		EFB2_01974	0.79	+0.6
2,133,885	+		EFB2_01974	0.81	-0.1
2,133,885	+		EFB2_01974	0.81	+2.8
2,133,885	+		EFB2_01974	0.81	-2.1
2,133,886	-		EFB2_01974	0.81	+1.0
2,133,958	-		EFB2_01974	0.86	+0.8
2,133,987	+		EFB2_01974	0.88	-1.8
2,133,987	+		EFB2_01974	0.88	-0.9
2,133,987	+		EFB2_01974	0.88	-1.1
2,133,987	+		EFB2_01974	0.88	-1.0
2,133,987	+		EFB2_01974	0.88	-2.1
2,133,987	+		EFB2_01974	0.88	-1.0
2,133,988	-		EFB2_01974	0.88	+1.0
2,133,988	-		EFB2_01974	0.88	+0.2
2,133,998	+		EFB2_01974	0.89	-1.8
2,134,012	-		EFB2_01974	0.90	+1.7
2,134,012	-		EFB2_01974	0.90	-2.4
2,134,042	+				+1.4
2,134,042	+				+0.7
2,134,043	-				+1.3
2,134,043	-				-0.3
2,134,043	-				-0.8
2,134,054	+				+1.0
2,134,104	+				-0.7
2,134,105	-				-2.2
2,134,110	+				-0.7
2,134,130	-				-1.4
2,134,149	-				+0.3
2,134,151	-				+0.8
2,134,151	-				-0.3
2,134,217	-				-1.9
2,134,250	+				+0.3
2,134,251	-				-1.4
2,134,251	-				-0.3
2,134,453	+				+0.6
2,134,453	+				-1.4
2,134,484	-		EFB2_01975	0.11	-0.5
2,134,673	-		EFB2_01975	0.22	+0.3
2,134,673	-		EFB2_01975	0.22	-1.8
2,134,685	-		EFB2_01975	0.22	+1.6
2,134,739	+		EFB2_01975	0.25	+0.8
2,134,767	+		EFB2_01975	0.27	+1.7
2,134,770	-		EFB2_01975	0.27	+2.1
2,134,889	-		EFB2_01975	0.33	-0.6
2,134,951	-		EFB2_01975	0.37	-0.9
2,135,045	-		EFB2_01975	0.42	-0.5
2,135,070	+		EFB2_01975	0.43	-1.8
2,135,071	-		EFB2_01975	0.43	-0.2
2,135,151	+		EFB2_01975	0.48	-0.1
2,135,531	-		EFB2_01975	0.69	+1.0
2,135,545	+		EFB2_01975	0.70	-1.3
2,135,761	+		EFB2_01975	0.81	+1.2
2,135,777	-		EFB2_01975	0.82	-1.0
2,135,802	-		EFB2_01975	0.84	+3.5
2,136,069	-				-0.2
2,136,073	+				-1.9
2,136,090	+				-2.4
2,136,092	+				+2.3
2,136,104	+				+0.9
2,136,154	+				+0.3
2,136,155	-				-2.6
2,136,155	-				+1.2
2,136,156	+				-1.1
2,136,162	+				+0.4
2,136,162	+				-0.8
2,136,174	+				+0.0
2,136,174	+				+3.7
2,136,175	-				+2.3
2,136,178	-				+0.5
2,136,208	+				+1.1
2,136,208	+				+0.8
2,136,208	+				-1.0
2,136,209	-				-2.5
2,136,209	-				-1.7
2,136,222	-				+0.3
2,136,261	-				+0.5
2,136,261	-				+1.3
2,136,284	-				+0.7
2,136,299	+				-0.1
2,136,299	+				-1.5
2,136,334	-				+0.6
2,136,334	-				+1.1
2,136,346	+		EFB2_01976	0.11	+1.3
2,136,386	+		EFB2_01976	0.14	+0.0
2,136,386	+		EFB2_01976	0.14	+0.5
2,136,386	+		EFB2_01976	0.14	-1.9
2,136,387	-		EFB2_01976	0.14	-1.7
2,136,402	+		EFB2_01976	0.15	+0.1
2,136,402	+		EFB2_01976	0.15	-0.1
2,136,410	+		EFB2_01976	0.16	+1.3
2,136,411	-		EFB2_01976	0.16	-2.0
2,136,411	-		EFB2_01976	0.16	+0.5
2,136,411	-		EFB2_01976	0.16	+1.3
2,136,411	-		EFB2_01976	0.16	+0.3
2,136,411	-		EFB2_01976	0.16	-0.3
2,136,411	-		EFB2_01976	0.16	-0.5
2,136,438	+		EFB2_01976	0.18	+1.1
2,136,438	+		EFB2_01976	0.18	-0.4
2,136,439	-		EFB2_01976	0.19	+1.0
2,136,481	-		EFB2_01976	0.22	+0.6
2,136,492	-		EFB2_01976	0.23	+1.0
2,136,497	+		EFB2_01976	0.23	-1.7
2,136,497	+		EFB2_01976	0.23	-2.5
2,136,507	+		EFB2_01976	0.24	-0.5
2,136,517	-		EFB2_01976	0.25	-0.7
2,136,517	-		EFB2_01976	0.25	-2.8
2,136,517	-		EFB2_01976	0.25	+0.6
2,136,599	+		EFB2_01976	0.32	+1.0
2,136,599	+		EFB2_01976	0.32	+1.0
2,136,719	+		EFB2_01976	0.41	+0.3
2,136,720	-		EFB2_01976	0.42	-0.6
2,136,739	+		EFB2_01976	0.43	+0.6
2,136,739	+		EFB2_01976	0.43	+0.8
2,136,739	+		EFB2_01976	0.43	-2.1
2,136,739	+		EFB2_01976	0.43	-1.5
2,136,739	+		EFB2_01976	0.43	+0.0
2,136,739	+		EFB2_01976	0.43	+1.3
2,136,740	-		EFB2_01976	0.43	-0.7
2,136,740	-		EFB2_01976	0.43	+0.2
2,136,740	-		EFB2_01976	0.43	-1.5
2,136,740	-		EFB2_01976	0.43	-0.4
2,136,776	+		EFB2_01976	0.46	-0.1
2,136,776	+		EFB2_01976	0.46	-0.3
2,136,777	-		EFB2_01976	0.46	+2.0
2,136,777	-		EFB2_01976	0.46	-1.4
2,136,806	+		EFB2_01976	0.49	+2.1
2,136,806	+		EFB2_01976	0.49	+0.0
2,136,806	+		EFB2_01976	0.49	+0.6
2,136,806	+		EFB2_01976	0.49	-0.7
2,136,806	+		EFB2_01976	0.49	-0.5
2,136,807	-		EFB2_01976	0.49	-1.6
2,136,807	-		EFB2_01976	0.49	-1.1
2,136,807	-		EFB2_01976	0.49	-0.7
2,136,807	-		EFB2_01976	0.49	-3.3
2,136,807	-		EFB2_01976	0.49	+0.3
2,136,807	-		EFB2_01976	0.49	+0.1
2,136,807	-		EFB2_01976	0.49	+1.5
2,136,807	-		EFB2_01976	0.49	-1.1
2,136,807	-		EFB2_01976	0.49	+0.3
2,136,828	-		EFB2_01976	0.50	-1.6
2,136,828	-		EFB2_01976	0.50	-0.6
2,136,841	+		EFB2_01976	0.51	+1.0
2,136,841	+		EFB2_01976	0.51	+1.1
2,136,842	-		EFB2_01976	0.52	+2.1
2,136,842	-		EFB2_01976	0.52	+0.1
2,136,878	+		EFB2_01976	0.54	-0.3
2,136,879	-		EFB2_01976	0.55	-2.9
2,136,879	-		EFB2_01976	0.55	-3.0
2,136,879	-		EFB2_01976	0.55	+1.0
2,136,879	-		EFB2_01976	0.55	-3.3
2,136,888	+		EFB2_01976	0.55	+3.5
2,136,888	+		EFB2_01976	0.55	-0.8
2,136,888	+		EFB2_01976	0.55	-2.4
2,136,889	-		EFB2_01976	0.55	-0.5
2,136,889	-		EFB2_01976	0.55	-0.2
2,136,889	-		EFB2_01976	0.55	+1.2
2,136,889	-		EFB2_01976	0.55	-0.7
2,136,923	+		EFB2_01976	0.58	-0.8
2,136,923	+		EFB2_01976	0.58	+0.1
2,136,923	+		EFB2_01976	0.58	-2.4
2,136,923	+		EFB2_01976	0.58	+0.6
2,136,923	+		EFB2_01976	0.58	-1.4
2,136,923	+		EFB2_01976	0.58	-1.3
2,136,923	+		EFB2_01976	0.58	+0.3
2,136,924	-		EFB2_01976	0.58	-0.5
2,136,924	-		EFB2_01976	0.58	-0.8
2,136,924	-		EFB2_01976	0.58	+0.3
2,136,924	-		EFB2_01976	0.58	+0.9
2,136,924	-		EFB2_01976	0.58	-0.7
2,136,924	-		EFB2_01976	0.58	-0.8
2,136,934	-		EFB2_01976	0.59	-0.2
2,136,991	+		EFB2_01976	0.64	+1.0
2,136,997	+		EFB2_01976	0.64	-1.9
2,136,997	+		EFB2_01976	0.64	-0.4
2,136,997	+		EFB2_01976	0.64	+0.9
2,136,997	+		EFB2_01976	0.64	+2.3
2,136,997	+		EFB2_01976	0.64	-1.1
2,136,997	+		EFB2_01976	0.64	-0.3
2,136,997	+		EFB2_01976	0.64	-2.6
2,136,997	+		EFB2_01976	0.64	-1.0
2,136,997	+		EFB2_01976	0.64	-0.6
2,136,997	+		EFB2_01976	0.64	-1.8
2,136,997	+		EFB2_01976	0.64	-0.8
2,136,997	+		EFB2_01976	0.64	+2.3
2,136,997	+		EFB2_01976	0.64	+0.3
2,136,997	+		EFB2_01976	0.64	+0.3
2,136,997	+		EFB2_01976	0.64	+0.0
2,136,997	+		EFB2_01976	0.64	-1.5
2,136,997	+		EFB2_01976	0.64	-2.1
2,136,997	+		EFB2_01976	0.64	-2.0
2,136,997	+		EFB2_01976	0.64	-1.5
2,136,997	+		EFB2_01976	0.64	-0.3
2,136,997	+		EFB2_01976	0.64	+0.3
2,136,997	+		EFB2_01976	0.64	-3.6
2,136,997	+		EFB2_01976	0.64	-0.1
2,136,997	+		EFB2_01976	0.64	+0.3
2,136,997	+		EFB2_01976	0.64	+1.7
2,136,997	+		EFB2_01976	0.64	-0.9
2,136,997	+		EFB2_01976	0.64	+0.7
2,136,997	+		EFB2_01976	0.64	+1.7
2,136,997	+		EFB2_01976	0.64	-0.4
2,136,997	+		EFB2_01976	0.64	+0.4
2,136,997	+		EFB2_01976	0.64	-2.0
2,136,997	+		EFB2_01976	0.64	-2.7
2,136,997	+		EFB2_01976	0.64	-0.3
2,136,997	+		EFB2_01976	0.64	+0.1
2,136,997	+		EFB2_01976	0.64	+2.9
2,136,997	+		EFB2_01976	0.64	+1.2
2,136,998	-		EFB2_01976	0.64	-0.0
2,136,998	-		EFB2_01976	0.64	-1.1
2,136,998	-		EFB2_01976	0.64	+2.1
2,136,998	-		EFB2_01976	0.64	-0.4
2,136,998	-		EFB2_01976	0.64	-0.7
2,136,998	-		EFB2_01976	0.64	-1.3
2,136,998	-		EFB2_01976	0.64	-0.9
2,136,998	-		EFB2_01976	0.64	+1.1
2,136,998	-		EFB2_01976	0.64	-1.3
2,136,998	-		EFB2_01976	0.64	+0.3
2,136,998	-		EFB2_01976	0.64	+1.2
2,136,998	-		EFB2_01976	0.64	-3.1
2,136,998	-		EFB2_01976	0.64	-1.4
2,136,998	-		EFB2_01976	0.64	+3.3
2,136,998	-		EFB2_01976	0.64	-1.0
2,136,998	-		EFB2_01976	0.64	-1.1
2,136,998	-		EFB2_01976	0.64	+0.5
2,136,998	-		EFB2_01976	0.64	-1.0
2,136,998	-		EFB2_01976	0.64	+0.5
2,136,998	-		EFB2_01976	0.64	-0.5
2,136,998	-		EFB2_01976	0.64	+1.9
2,136,998	-		EFB2_01976	0.64	+2.3
2,136,998	-		EFB2_01976	0.64	-0.5