Strain Fitness in Escherichia fergusonii Becca around EFB2_01919

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,064,349	+		EFB2_01918	0.60	-0.7
2,064,349	+		EFB2_01918	0.60	+0.0
2,064,398	+		EFB2_01918	0.62	-1.1
2,064,398	+		EFB2_01918	0.62	+0.2
2,064,398	+		EFB2_01918	0.62	+0.3
2,064,399	-		EFB2_01918	0.62	-1.9
2,064,399	-		EFB2_01918	0.62	+0.6
2,064,404	+		EFB2_01918	0.63	+0.2
2,064,404	+		EFB2_01918	0.63	-0.9
2,064,405	-		EFB2_01918	0.63	-0.0
2,064,419	+		EFB2_01918	0.63	+0.3
2,064,419	+		EFB2_01918	0.63	-0.3
2,064,419	+		EFB2_01918	0.63	+2.1
2,064,419	+		EFB2_01918	0.63	-2.5
2,064,419	+		EFB2_01918	0.63	+0.7
2,064,419	+		EFB2_01918	0.63	-0.4
2,064,419	+		EFB2_01918	0.63	+0.6
2,064,419	+		EFB2_01918	0.63	-0.0
2,064,420	-		EFB2_01918	0.63	-1.4
2,064,420	-		EFB2_01918	0.63	+0.4
2,064,420	-		EFB2_01918	0.63	-2.2
2,064,420	-		EFB2_01918	0.63	-0.7
2,064,420	-		EFB2_01918	0.63	+1.5
2,064,420	-		EFB2_01918	0.63	+2.0
2,064,420	-		EFB2_01918	0.63	+0.0
2,064,420	-		EFB2_01918	0.63	+1.7
2,064,420	-		EFB2_01918	0.63	-0.3
2,064,432	+		EFB2_01918	0.64	+0.1
2,064,433	+		EFB2_01918	0.64	+0.5
2,064,433	+		EFB2_01918	0.64	+2.9
2,064,433	+		EFB2_01918	0.64	-1.7
2,064,433	+		EFB2_01918	0.64	-0.9
2,064,433	+		EFB2_01918	0.64	-2.7
2,064,433	+		EFB2_01918	0.64	+0.5
2,064,433	+		EFB2_01918	0.64	+0.7
2,064,433	+		EFB2_01918	0.64	+0.3
2,064,433	+		EFB2_01918	0.64	-0.3
2,064,433	+		EFB2_01918	0.64	-0.9
2,064,433	+		EFB2_01918	0.64	-0.5
2,064,433	+		EFB2_01918	0.64	-1.3
2,064,433	+		EFB2_01918	0.64	+1.9
2,064,433	+		EFB2_01918	0.64	+0.4
2,064,433	+		EFB2_01918	0.64	-1.3
2,064,434	-		EFB2_01918	0.64	+2.6
2,064,434	-		EFB2_01918	0.64	+1.7
2,064,434	-		EFB2_01918	0.64	+0.1
2,064,434	-		EFB2_01918	0.64	+2.0
2,064,434	-		EFB2_01918	0.64	+0.9
2,064,434	-		EFB2_01918	0.64	+0.5
2,064,434	-		EFB2_01918	0.64	+0.2
2,064,434	-		EFB2_01918	0.64	-1.9
2,064,434	-		EFB2_01918	0.64	-1.8
2,064,434	-		EFB2_01918	0.64	-1.2
2,064,494	+		EFB2_01918	0.66	+1.6
2,064,494	+		EFB2_01918	0.66	+0.3
2,064,494	+		EFB2_01918	0.66	-0.2
2,064,494	+		EFB2_01918	0.66	+1.2
2,064,494	+		EFB2_01918	0.66	-1.9
2,064,494	+		EFB2_01918	0.66	-2.3
2,064,494	+		EFB2_01918	0.66	-0.1
2,064,494	+		EFB2_01918	0.66	+1.2
2,064,494	+		EFB2_01918	0.66	-1.8
2,064,494	+		EFB2_01918	0.66	+0.2
2,064,494	+		EFB2_01918	0.66	-1.6
2,064,495	-		EFB2_01918	0.66	+0.5
2,064,495	-		EFB2_01918	0.66	-2.0
2,064,495	-		EFB2_01918	0.66	-1.5
2,064,495	-		EFB2_01918	0.66	-0.5
2,064,599	+		EFB2_01918	0.71	-1.0
2,064,599	+		EFB2_01918	0.71	-0.3
2,064,599	+		EFB2_01918	0.71	-1.6
2,064,599	+		EFB2_01918	0.71	-0.0
2,064,599	+		EFB2_01918	0.71	-1.7
2,064,600	-		EFB2_01918	0.71	-0.4
2,064,623	+		EFB2_01918	0.72	-0.3
2,064,623	+		EFB2_01918	0.72	+1.3
2,064,623	+		EFB2_01918	0.72	+1.1
2,064,623	+		EFB2_01918	0.72	-0.9
2,064,623	+		EFB2_01918	0.72	-0.7
2,064,623	+		EFB2_01918	0.72	+0.8
2,064,623	+		EFB2_01918	0.72	-0.2
2,064,624	-		EFB2_01918	0.72	+0.2
2,064,624	-		EFB2_01918	0.72	-0.7
2,064,624	-		EFB2_01918	0.72	+1.7
2,064,624	-		EFB2_01918	0.72	+0.5
2,064,624	-		EFB2_01918	0.72	-2.3
2,064,675	+		EFB2_01918	0.74	-0.4
2,064,675	+		EFB2_01918	0.74	+2.0
2,064,675	+		EFB2_01918	0.74	-0.7
2,064,675	+		EFB2_01918	0.74	+0.9
2,064,675	+		EFB2_01918	0.74	-0.7
2,064,675	+		EFB2_01918	0.74	+0.7
2,064,675	+		EFB2_01918	0.74	-2.4
2,064,675	+		EFB2_01918	0.74	-0.3
2,064,675	+		EFB2_01918	0.74	+1.4
2,064,675	+		EFB2_01918	0.74	-2.5
2,064,675	+		EFB2_01918	0.74	+0.9
2,064,675	+		EFB2_01918	0.74	-1.0
2,064,675	+		EFB2_01918	0.74	+3.3
2,064,676	-		EFB2_01918	0.74	-2.5
2,064,676	-		EFB2_01918	0.74	+2.4
2,064,676	-		EFB2_01918	0.74	+0.2
2,064,676	-		EFB2_01918	0.74	-0.6
2,064,676	-		EFB2_01918	0.74	+1.0
2,064,676	-		EFB2_01918	0.74	-0.4
2,064,676	-		EFB2_01918	0.74	-1.4
2,064,778	+		EFB2_01918	0.78	+1.3
2,064,779	-		EFB2_01918	0.78	-0.7
2,064,786	-		EFB2_01918	0.78	+0.3
2,064,847	+		EFB2_01918	0.81	+1.4
2,064,851	+		EFB2_01918	0.81	+2.3
2,064,852	+		EFB2_01918	0.81	-1.0
2,064,852	+		EFB2_01918	0.81	+0.5
2,064,852	+		EFB2_01918	0.81	-2.7
2,064,852	+		EFB2_01918	0.81	+1.1
2,064,852	+		EFB2_01918	0.81	+0.5
2,064,852	+		EFB2_01918	0.81	+1.5
2,064,852	+		EFB2_01918	0.81	-2.3
2,064,852	+		EFB2_01918	0.81	-0.0
2,064,853	-		EFB2_01918	0.81	+2.7
2,064,853	-		EFB2_01918	0.81	+3.3
2,064,853	-		EFB2_01918	0.81	-1.2
2,064,853	-		EFB2_01918	0.81	-1.4
2,064,853	-		EFB2_01918	0.81	+3.3
2,064,853	-		EFB2_01918	0.81	+0.6
2,064,853	-		EFB2_01918	0.81	+0.0
2,064,853	-		EFB2_01918	0.81	+0.9
2,064,853	-		EFB2_01918	0.81	+0.4
2,064,853	-		EFB2_01918	0.81	+1.9
2,064,853	-		EFB2_01918	0.81	+0.5
2,064,853	-		EFB2_01918	0.81	-1.2
2,064,887	-		EFB2_01918	0.82	+1.0
2,064,887	-		EFB2_01918	0.82	-0.5
2,064,911	+		EFB2_01918	0.83	-0.5
2,064,965	+		EFB2_01918	0.85	-0.3
2,064,966	-		EFB2_01918	0.85	-1.5
2,064,998	+		EFB2_01918	0.87	+1.1
2,064,998	+		EFB2_01918	0.87	+1.8
2,064,998	+		EFB2_01918	0.87	-1.4
2,064,998	+		EFB2_01918	0.87	+0.8
2,064,999	-		EFB2_01918	0.87	+0.7
2,064,999	-		EFB2_01918	0.87	-1.5
2,064,999	-		EFB2_01918	0.87	+1.1
2,064,999	-		EFB2_01918	0.87	-0.4
2,064,999	-		EFB2_01918	0.87	-0.0
2,064,999	-		EFB2_01918	0.87	+1.3
2,064,999	-		EFB2_01918	0.87	+1.0
2,064,999	-		EFB2_01918	0.87	-0.7
2,064,999	-		EFB2_01918	0.87	-2.1
2,064,999	-		EFB2_01918	0.87	+2.9
2,064,999	-		EFB2_01918	0.87	+4.3
2,065,000	+		EFB2_01918	0.87	+0.7
2,065,000	+		EFB2_01918	0.87	-2.6
2,065,000	+		EFB2_01918	0.87	+2.3
2,065,000	+		EFB2_01918	0.87	-0.4
2,065,000	+		EFB2_01918	0.87	-1.7
2,065,000	+		EFB2_01918	0.87	-0.2
2,065,000	+		EFB2_01918	0.87	+2.0
2,065,000	+		EFB2_01918	0.87	-1.0
2,065,000	+		EFB2_01918	0.87	-0.9
2,065,000	+		EFB2_01918	0.87	-0.9
2,065,001	-		EFB2_01918	0.87	+0.1
2,065,001	-		EFB2_01918	0.87	+2.9
2,065,001	-		EFB2_01918	0.87	-1.9
2,065,001	-		EFB2_01918	0.87	+2.3
2,065,001	-		EFB2_01918	0.87	+2.3
2,065,001	-		EFB2_01918	0.87	+1.8
2,065,001	-		EFB2_01918	0.87	-0.1
2,065,001	-		EFB2_01918	0.87	-1.1
2,065,001	-		EFB2_01918	0.87	-1.7
2,065,001	-		EFB2_01918	0.87	-0.9
2,065,007	-		EFB2_01918	0.87	-2.1
2,065,070	+		EFB2_01918	0.90	+0.3
2,065,070	+		EFB2_01918	0.90	+1.5
2,065,070	+		EFB2_01918	0.90	-3.3
2,065,070	+		EFB2_01918	0.90	-1.4
2,065,070	+		EFB2_01918	0.90	-0.6
2,065,070	+		EFB2_01918	0.90	-1.3
2,065,071	-		EFB2_01918	0.90	+0.3
2,065,071	-		EFB2_01918	0.90	-1.6
2,065,071	-		EFB2_01918	0.90	+0.8
2,065,071	-		EFB2_01918	0.90	+0.6
2,065,071	-		EFB2_01918	0.90	+0.3
2,065,075	+		EFB2_01918	0.90	-0.2
2,065,075	+		EFB2_01918	0.90	+0.6
2,065,076	-		EFB2_01918	0.90	-1.3
2,065,086	+				-0.0
2,065,086	+				+2.7
2,065,086	+				-0.3
2,065,087	-				-0.8
2,065,087	-				-1.6
2,065,087	-				+2.6
2,065,087	-				-1.4
2,065,132	+				-2.2
2,065,132	+				-1.9
2,065,132	+				-3.0
2,065,133	-				+0.7
2,065,133	-				+1.9
2,065,133	-				+1.6
2,065,146	+				-0.3
2,065,147	-				-0.9
2,065,163	+				-0.2
2,065,164	-				+1.3
2,065,196	+				+2.1
2,065,196	+				-1.3
2,065,196	+				+4.0
2,065,196	+				+0.4
2,065,197	-				+0.1
2,065,197	-				-0.6
2,065,197	-				-0.2
2,065,197	-				+0.9
2,065,228	-				+0.4
2,065,228	-				-0.9
2,065,229	+				-1.2
2,065,229	+				-0.7
2,065,253	+				+0.3
2,065,253	+				+0.1
2,065,254	-				+0.2
2,065,257	+				+0.7
2,065,257	+				-1.2
2,065,257	+				+1.3
2,065,257	+				+2.3
2,065,258	-				-0.4
2,065,258	-				+1.4
2,065,258	-				-0.2
2,065,258	-				+0.4
2,065,258	-				-1.5
2,065,292	+				-0.9
2,065,313	+				+0.7
2,065,314	-				+0.3
2,065,318	+				-0.7
2,065,318	+				-0.6
2,065,319	-				+0.7
2,065,319	-				+0.2
2,065,319	-				-2.1
2,065,319	-				-1.7
2,065,343	-				-0.9
2,065,343	-				-0.2
2,065,355	+				-2.3
2,065,355	+				+0.7
2,065,355	+				+0.8
2,065,356	-				+0.8
2,065,361	+				+0.4
2,065,362	-				-0.5
2,065,362	-				+2.6
2,065,362	-				-0.1
2,065,369	+				-0.0
2,065,369	+				+0.7
2,065,369	+				-1.7
2,065,369	+				-0.4
2,065,369	+				-0.0
2,065,369	+				-0.4
2,065,369	+				+0.8
2,065,370	-				+1.8
2,065,370	-				-0.9
2,065,370	-				-2.0
2,065,371	+				+1.4
2,065,371	+				-0.6
2,065,371	+				-0.0
2,065,371	+				-1.3
2,065,371	+				-0.9
2,065,371	+				-0.0
2,065,371	+				-0.0
2,065,371	+				-0.8
2,065,371	+				-0.2
2,065,371	+				-2.6
2,065,371	+				-2.6
2,065,371	+				+0.4
2,065,371	+				-1.0
2,065,372	-				-0.4
2,065,372	-				-1.4
2,065,372	-				+0.3
2,065,372	-				-0.1
2,065,372	-				-0.5
2,065,372	-				+0.4
2,065,372	-				+0.1
2,065,388	+				-1.9
2,065,388	+				+2.4
2,065,388	+				+0.3
2,065,388	+				+1.0
2,065,388	+				+0.4
2,065,388	+				-3.7
2,065,389	-				-2.6
2,065,389	-				-0.3
2,065,400	+				+1.5
2,065,401	-				+0.4
2,065,471	+				+1.0
2,065,471	+				-1.3
2,065,471	+				-2.9
2,065,472	-				+2.3
2,065,472	-				+0.0
2,065,472	-				-0.2
2,065,472	-				-0.9
2,065,472	-				-2.7
2,065,516	+		EFB2_01919	0.11	-1.0
2,065,516	+		EFB2_01919	0.11	+0.4
2,065,517	-		EFB2_01919	0.11	+1.5
2,065,517	-		EFB2_01919	0.11	-2.4
2,065,517	-		EFB2_01919	0.11	-0.1
2,065,517	-		EFB2_01919	0.11	+0.0
2,065,530	-		EFB2_01919	0.12	+0.6
2,065,537	+		EFB2_01919	0.13	+0.6
2,065,537	+		EFB2_01919	0.13	-0.7
2,065,537	+		EFB2_01919	0.13	-0.9
2,065,554	+		EFB2_01919	0.14	-0.6
2,065,555	-		EFB2_01919	0.14	+0.7
2,065,555	-		EFB2_01919	0.14	+0.1
2,065,589	+		EFB2_01919	0.16	-1.2
2,065,589	+		EFB2_01919	0.16	+0.2
2,065,594	+		EFB2_01919	0.17	+0.2
2,065,594	+		EFB2_01919	0.17	+0.7
2,065,595	-		EFB2_01919	0.17	-1.6
2,065,595	-		EFB2_01919	0.17	-0.6
2,065,605	+		EFB2_01919	0.17	-0.0
2,065,606	-		EFB2_01919	0.17	-1.5
2,065,625	+		EFB2_01919	0.19	-1.3
2,065,625	+		EFB2_01919	0.19	+0.6
2,065,625	+		EFB2_01919	0.19	-0.0
2,065,654	+		EFB2_01919	0.21	-0.5
2,065,654	+		EFB2_01919	0.21	-3.0
2,065,691	+		EFB2_01919	0.23	-1.2
2,065,691	+		EFB2_01919	0.23	+1.5
2,065,691	+		EFB2_01919	0.23	-1.7
2,065,692	-		EFB2_01919	0.23	+1.5
2,065,692	-		EFB2_01919	0.23	+1.1
2,065,697	+		EFB2_01919	0.23	+0.2
2,065,701	+		EFB2_01919	0.24	+1.2
2,065,701	+		EFB2_01919	0.24	+0.2
2,065,701	+		EFB2_01919	0.24	-1.1
2,065,701	+		EFB2_01919	0.24	+1.6
2,065,702	-		EFB2_01919	0.24	+0.2
2,065,702	-		EFB2_01919	0.24	+0.4
2,065,702	-		EFB2_01919	0.24	+1.9
2,065,702	-		EFB2_01919	0.24	+1.8
2,065,702	-		EFB2_01919	0.24	+0.5
2,065,702	-		EFB2_01919	0.24	+0.6
2,065,726	-		EFB2_01919	0.25	+0.3
2,065,768	-		EFB2_01919	0.28	+0.7
2,065,772	+		EFB2_01919	0.28	+0.2
2,065,772	+		EFB2_01919	0.28	+0.5
2,065,772	+		EFB2_01919	0.28	+0.3
2,065,772	+		EFB2_01919	0.28	+0.4
2,065,773	-		EFB2_01919	0.28	+1.3
2,065,773	-		EFB2_01919	0.28	-2.1
2,065,773	-		EFB2_01919	0.28	-0.2
2,065,773	-		EFB2_01919	0.28	-0.9
2,065,773	-		EFB2_01919	0.28	-1.4
2,065,773	-		EFB2_01919	0.28	-1.8
2,065,817	+		EFB2_01919	0.31	+1.9
2,065,818	-		EFB2_01919	0.31	-0.0
2,065,886	+		EFB2_01919	0.36	+0.9
2,065,886	+		EFB2_01919	0.36	-0.3
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