Strain Fitness in Escherichia fergusonii Becca around EFB2_01384

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,446,538	+		EFB2_01383	0.89	+1.8
1,446,539	-		EFB2_01383	0.89	-1.5
1,446,590	+		EFB2_01383	0.89	+0.3
1,446,590	+		EFB2_01383	0.89	+1.8
1,446,590	+		EFB2_01383	0.89	+0.0
1,446,590	+		EFB2_01383	0.89	-2.9
1,446,590	+		EFB2_01383	0.89	+0.1
1,446,590	+		EFB2_01383	0.89	-1.4
1,446,591	-		EFB2_01383	0.89	-2.7
1,446,591	-		EFB2_01383	0.89	+3.0
1,446,592	+		EFB2_01383	0.89	+0.4
1,446,593	-		EFB2_01383	0.89	-2.2
1,446,629	-		EFB2_01383	0.90	+0.4
1,446,661	+				-3.5
1,446,661	+				-0.4
1,446,661	+				+0.4
1,446,661	+				+0.5
1,446,662	-				+1.0
1,446,662	-				+0.6
1,446,662	-				-2.2
1,446,757	+				-1.3
1,446,757	+				+2.8
1,446,758	-				-1.4
1,446,827	+				-2.8
1,446,827	+				-0.1
1,446,827	+				-1.3
1,446,827	+				-0.8
1,446,827	+				-1.3
1,446,827	+				+3.0
1,446,827	+				+0.9
1,446,827	+				+1.0
1,446,828	-				-0.0
1,446,828	-				-0.7
1,446,828	-				-1.7
1,446,828	-				-0.9
1,446,828	-				+0.6
1,446,828	-				-0.1
1,446,828	-				-0.5
1,446,828	-				+1.3
1,446,828	-				-0.4
1,446,828	-				+0.3
1,446,837	+				-0.2
1,446,837	+				+2.8
1,446,837	+				+1.1
1,446,837	+				+0.3
1,446,837	+				-2.3
1,446,837	+				-0.3
1,446,837	+				+1.0
1,446,837	+				-2.2
1,446,837	+				-2.8
1,446,838	-				+0.9
1,446,838	-				+0.7
1,446,838	-				-0.4
1,446,838	-				+0.9
1,446,838	-				-2.7
1,446,838	-				-2.5
1,446,886	+				-1.6
1,446,887	-				+0.7
1,446,907	+				+0.3
1,446,907	+				+0.2
1,446,907	+				+0.1
1,446,907	+				-0.3
1,446,907	+				-1.9
1,446,907	+				-1.3
1,446,907	+				+0.7
1,446,907	+				-1.0
1,446,908	-				-2.1
1,446,908	-				+0.6
1,446,908	-				-3.1
1,446,908	-				+0.2
1,446,964	+				-2.2
1,446,964	+				-0.7
1,446,964	+				-0.9
1,446,964	+				+0.5
1,446,964	+				+0.6
1,446,964	+				-0.1
1,446,964	+				+0.9
1,446,965	-				-1.4
1,446,965	-				-2.5
1,446,967	+				-0.4
1,446,967	+				-0.9
1,446,968	-				-0.9
1,446,968	-				+0.8
1,446,968	-				-2.3
1,446,977	+				+0.4
1,446,977	+				-1.8
1,446,977	+				+0.6
1,446,978	-				+1.2
1,446,978	-				-1.3
1,446,979	+				+1.3
1,446,979	+				-0.4
1,446,980	-				-0.5
1,446,980	-				+0.6
1,446,997	+				+0.7
1,446,998	-				+0.9
1,447,006	+				+3.0
1,447,006	+				-2.2
1,447,007	-				+1.5
1,447,010	+				+3.1
1,447,010	+				+2.4
1,447,010	+				-1.2
1,447,010	+				-1.3
1,447,010	+				+0.5
1,447,010	+				-0.9
1,447,010	+				-0.5
1,447,010	+				-1.5
1,447,010	+				+1.7
1,447,010	+				-2.3
1,447,010	+				+2.0
1,447,010	+				+1.7
1,447,010	+				-0.1
1,447,011	-				+0.7
1,447,011	-				+1.6
1,447,011	-				+0.2
1,447,011	-				+0.0
1,447,011	-				+2.3
1,447,040	-				+2.6
1,447,046	-				+0.3
1,447,050	+				+0.4
1,447,093	+				-0.1
1,447,093	+				+1.1
1,447,093	+				+2.1
1,447,093	+				+2.3
1,447,093	+				+1.0
1,447,093	+				+0.5
1,447,093	+				-1.3
1,447,093	+				-1.0
1,447,093	+				+0.3
1,447,093	+				+0.1
1,447,093	+				-0.3
1,447,093	+				+0.1
1,447,093	+				-0.2
1,447,094	-				-2.2
1,447,094	-				+1.2
1,447,094	-				+0.0
1,447,094	-				+0.6
1,447,094	-				+0.7
1,447,094	-				+0.5
1,447,094	-				+0.1
1,447,094	-				+0.2
1,447,094	-				-0.3
1,447,094	-				+0.1
1,447,094	-				-1.4
1,447,094	-				-0.2
1,447,094	-				-0.9
1,447,094	-				-0.7
1,447,094	-				+1.9
1,447,094	-				-3.0
1,447,117	+				-0.4
1,447,117	+				+0.5
1,447,117	+				+1.4
1,447,118	-				-2.2
1,447,118	-				-0.3
1,447,118	-				-1.2
1,447,118	-				-0.7
1,447,120	+				+0.6
1,447,120	+				-0.1
1,447,120	+				+0.1
1,447,121	-				-1.4
1,447,121	-				+1.0
1,447,128	+				-3.0
1,447,128	+				-0.3
1,447,168	+				-1.7
1,447,169	-				-1.2
1,447,189	+				-1.7
1,447,189	+				+2.2
1,447,190	-				-1.3
1,447,192	+				+1.2
1,447,192	+				+0.1
1,447,192	+				+0.9
1,447,192	+				+1.6
1,447,192	+				+0.4
1,447,192	+				-0.5
1,447,192	+				-2.9
1,447,192	+				-0.2
1,447,192	+				-0.0
1,447,192	+				+0.3
1,447,193	-				+1.6
1,447,193	-				+1.0
1,447,193	-				+0.2
1,447,193	-				-0.1
1,447,193	-				-0.2
1,447,193	-				-0.5
1,447,193	-				-0.0
1,447,196	+				+1.5
1,447,196	+				+0.6
1,447,197	-				-0.5
1,447,197	-				+2.2
1,447,219	+				-0.2
1,447,219	+				-0.4
1,447,219	+				-3.0
1,447,220	-				-1.2
1,447,220	-				-0.7
1,447,220	-				-0.4
1,447,220	-				+1.2
1,447,220	-				+1.7
1,447,220	-				+1.0
1,447,220	-				-0.3
1,447,220	-				+0.3
1,447,220	-				-1.3
1,447,220	-				+1.5
1,447,220	-				-0.8
1,447,220	-				-2.2
1,447,220	-				-1.5
1,447,220	-				+0.5
1,447,220	-				+1.3
1,447,235	-				+1.0
1,447,267	-				-0.9
1,447,267	-				-3.0
1,447,283	+				-0.9
1,447,283	+				+1.0
1,447,283	+				-1.8
1,447,283	+				+0.3
1,447,283	+				-0.7
1,447,284	-				-0.0
1,447,284	-				+0.3
1,447,284	-				-2.2
1,447,306	+				-1.3
1,447,307	-				+0.2
1,447,316	-				+0.6
1,447,352	+				-0.5
1,447,352	+				-0.7
1,447,387	+				-0.7
1,447,405	+				-1.8
1,447,405	+				+0.3
1,447,405	+				+0.6
1,447,405	+				-1.4
1,447,405	+				-0.8
1,447,405	+				+0.8
1,447,405	+				+1.3
1,447,405	+				-2.7
1,447,405	+				-0.2
1,447,405	+				+0.4
1,447,405	+				-0.1
1,447,405	+				-0.4
1,447,405	+				-1.0
1,447,405	+				+0.0
1,447,405	+				-0.6
1,447,405	+				+0.9
1,447,405	+				-3.1
1,447,405	+				+0.5
1,447,405	+				+0.8
1,447,405	+				+0.0
1,447,406	-				-0.1
1,447,406	-				+0.9
1,447,406	-				+0.4
1,447,406	-				-0.0
1,447,406	-				+2.3
1,447,406	-				+0.9
1,447,406	-				+1.2
1,447,406	-				-0.6
1,447,406	-				+2.3
1,447,406	-				-0.7
1,447,408	+				-0.7
1,447,408	+				+1.0
1,447,408	+				-0.5
1,447,409	-				+0.4
1,447,409	-				-2.3
1,447,409	-				-2.9
1,447,409	-				+1.6
1,447,416	+				-0.0
1,447,416	+				-2.2
1,447,416	+				+0.5
1,447,417	-				-2.9
1,447,419	+				-0.4
1,447,419	+				+0.5
1,447,419	+				+0.5
1,447,419	+				+0.7
1,447,420	-				-0.3
1,447,420	-				+0.6
1,447,420	-				+1.3
1,447,420	-				+0.4
1,447,420	-				+2.1
1,447,420	-				-0.5
1,447,423	+				+0.6
1,447,423	+				-2.2
1,447,424	-				+1.8
1,447,424	-				+0.2
1,447,424	-				+0.2
1,447,424	-				+0.7
1,447,424	-				+1.3
1,447,474	+				+2.0
1,447,474	+				-0.9
1,447,475	-				-1.0
1,447,486	+				+1.1
1,447,487	-				-0.5
1,447,530	+				-0.4
1,447,531	-				+0.2
1,447,531	-				-0.9
1,447,581	+				+1.1
1,447,582	-				-1.9
1,447,638	+				-0.0
1,447,638	+				+0.7
1,447,649	-				-1.8
1,447,680	+		EFB2_01384	0.11	-1.8
1,447,680	+		EFB2_01384	0.11	+0.2
1,447,680	+		EFB2_01384	0.11	+0.4
1,447,680	+		EFB2_01384	0.11	-0.2
1,447,680	+		EFB2_01384	0.11	-1.3
1,447,681	-		EFB2_01384	0.12	+0.5
1,447,681	-		EFB2_01384	0.12	-0.3
1,447,681	-		EFB2_01384	0.12	-2.8
1,447,681	-		EFB2_01384	0.12	+1.5
1,447,681	-		EFB2_01384	0.12	-0.1
1,447,681	-		EFB2_01384	0.12	+0.7
1,447,682	+		EFB2_01384	0.12	-0.1
1,447,729	+		EFB2_01384	0.15	-2.2
1,447,730	-		EFB2_01384	0.15	-2.1
1,447,730	-		EFB2_01384	0.15	-0.3
1,447,730	-		EFB2_01384	0.15	+1.3
1,447,730	-		EFB2_01384	0.15	-0.1
1,447,730	-		EFB2_01384	0.15	-1.9
1,447,730	-		EFB2_01384	0.15	-0.9
1,447,762	-		EFB2_01384	0.17	+1.4
1,447,762	-		EFB2_01384	0.17	-0.4
1,447,762	-		EFB2_01384	0.17	+1.3
1,447,793	+		EFB2_01384	0.20	-0.0
1,447,793	+		EFB2_01384	0.20	-1.5
1,447,793	+		EFB2_01384	0.20	-0.4
1,447,830	+		EFB2_01384	0.22	-0.1
1,447,831	-		EFB2_01384	0.22	-0.7
1,447,897	-		EFB2_01384	0.27	-2.5
1,447,897	-		EFB2_01384	0.27	+0.8
1,447,897	-		EFB2_01384	0.27	+1.0
1,447,897	-		EFB2_01384	0.27	-2.7
1,447,947	+		EFB2_01384	0.31	+0.4
1,447,947	+		EFB2_01384	0.31	-2.3
1,447,947	+		EFB2_01384	0.31	-1.1
1,447,947	+		EFB2_01384	0.31	+1.1
1,447,947	+		EFB2_01384	0.31	+1.1
1,447,947	+		EFB2_01384	0.31	-0.5
1,447,947	+		EFB2_01384	0.31	-1.1
1,447,947	+		EFB2_01384	0.31	+0.7
1,447,947	+		EFB2_01384	0.31	-0.9
1,447,947	+		EFB2_01384	0.31	-2.5
1,447,947	+		EFB2_01384	0.31	+0.8
1,447,948	-		EFB2_01384	0.31	-0.4
1,447,948	-		EFB2_01384	0.31	-2.3
1,447,948	-		EFB2_01384	0.31	+0.5
1,447,948	-		EFB2_01384	0.31	+1.0
1,447,948	-		EFB2_01384	0.31	+0.6
1,447,948	-		EFB2_01384	0.31	-0.3
1,447,948	-		EFB2_01384	0.31	-0.5
1,447,948	-		EFB2_01384	0.31	+0.8
1,447,948	-		EFB2_01384	0.31	-1.5
1,447,948	-		EFB2_01384	0.31	+0.3
1,447,948	-		EFB2_01384	0.31	-2.2
1,447,948	-		EFB2_01384	0.31	+0.7
1,447,991	-		EFB2_01384	0.34	-1.2
1,447,991	-		EFB2_01384	0.34	-2.1
1,448,010	+		EFB2_01384	0.35	+0.8
1,448,011	-		EFB2_01384	0.36	-1.4
1,448,036	+		EFB2_01384	0.37	-1.5
1,448,036	+		EFB2_01384	0.37	+0.7
1,448,036	+		EFB2_01384	0.37	-1.8
1,448,036	+		EFB2_01384	0.37	-1.7
1,448,036	+		EFB2_01384	0.37	-0.6
1,448,036	+		EFB2_01384	0.37	+0.8
1,448,036	+		EFB2_01384	0.37	+0.9
1,448,037	-		EFB2_01384	0.37	-2.3
1,448,037	-		EFB2_01384	0.37	-0.8
1,448,037	-		EFB2_01384	0.37	-0.9
1,448,037	-		EFB2_01384	0.37	-0.5
1,448,037	-		EFB2_01384	0.37	-1.6
1,448,039	+		EFB2_01384	0.38	+0.3
1,448,039	+		EFB2_01384	0.38	+0.6
1,448,039	+		EFB2_01384	0.38	-1.2
1,448,039	+		EFB2_01384	0.38	+0.3
1,448,039	+		EFB2_01384	0.38	-0.3
1,448,039	+		EFB2_01384	0.38	-0.9
1,448,039	+		EFB2_01384	0.38	-0.0
1,448,039	+		EFB2_01384	0.38	-1.2
1,448,039	+		EFB2_01384	0.38	-0.2
1,448,040	-		EFB2_01384	0.38	-1.7
1,448,040	-		EFB2_01384	0.38	-0.5
1,448,040	-		EFB2_01384	0.38	-0.6
1,448,040	-		EFB2_01384	0.38	+1.7
1,448,040	-		EFB2_01384	0.38	+1.4
1,448,040	-		EFB2_01384	0.38	+0.7
1,448,040	-		EFB2_01384	0.38	+0.4
1,448,040	-		EFB2_01384	0.38	+0.1
1,448,040	-		EFB2_01384	0.38	+0.5
1,448,087	-		EFB2_01384	0.41	+1.1
1,448,087	-		EFB2_01384	0.41	-2.5
1,448,087	-		EFB2_01384	0.41	-0.3
1,448,103	+		EFB2_01384	0.42	+1.5
1,448,104	-		EFB2_01384	0.42	+0.2
1,448,146	+		EFB2_01384	0.45	-0.2
1,448,146	+		EFB2_01384	0.45	-0.5
1,448,146	+		EFB2_01384	0.45	+2.0
1,448,146	+		EFB2_01384	0.45	-0.1
1,448,147	-		EFB2_01384	0.45	-0.0
1,448,147	-		EFB2_01384	0.45	-1.2
1,448,147	-		EFB2_01384	0.45	+1.1
1,448,147	-		EFB2_01384	0.45	-0.4
1,448,147	-		EFB2_01384	0.45	-2.2
1,448,147	-		EFB2_01384	0.45	-0.7
1,448,147	-		EFB2_01384	0.45	+0.2
1,448,147	-		EFB2_01384	0.45	+1.5
1,448,147	-		EFB2_01384	0.45	-2.4
1,448,147	-		EFB2_01384	0.45	-0.8
1,448,147	-		EFB2_01384	0.45	+0.3
1,448,203	+		EFB2_01384	0.49	-0.5
1,448,204	-		EFB2_01384	0.50	-0.3
1,448,250	+		EFB2_01384	0.53	-2.8
1,448,250	+		EFB2_01384	0.53	-2.9
1,448,250	+		EFB2_01384	0.53	-1.3
1,448,250	+		EFB2_01384	0.53	+0.7
1,448,250	+		EFB2_01384	0.53	+2.2
1,448,250	+		EFB2_01384	0.53	-1.2
1,448,251	-		EFB2_01384	0.53	-2.4
1,448,251	-		EFB2_01384	0.53	+0.5
1,448,251	-		EFB2_01384	0.53	-0.6
1,448,260	+		EFB2_01384	0.54	+5.1
1,448,260	+		EFB2_01384	0.54	+2.3
1,448,260	+		EFB2_01384	0.54	+0.8
1,448,261	-		EFB2_01384	0.54	-0.3
1,448,320	-		EFB2_01384	0.58	-0.3
1,448,320	-		EFB2_01384	0.58	-0.4
1,448,371	+		EFB2_01384	0.62	+0.7
1,448,372	-		EFB2_01384	0.62	-0.1
1,448,372	-		EFB2_01384	0.62	-2.6
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