Strain Fitness in Escherichia fergusonii Becca around EFB2_01286

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,330,789	+				+1.1
1,330,799	+				-0.3
1,330,799	+				-0.6
1,330,799	+				+2.6
1,330,799	+				-1.6
1,330,799	+				-0.4
1,330,799	+				+1.9
1,330,799	+				-0.9
1,330,800	-				-1.4
1,330,800	-				+0.0
1,330,800	-				+2.6
1,330,800	-				-3.2
1,330,800	-				+0.7
1,330,800	-				+1.4
1,330,800	-				+0.7
1,330,800	-				+0.7
1,330,800	-				-0.1
1,330,800	-				-0.5
1,330,851	-		EFB2_01287	0.13	-1.6
1,330,875	+		EFB2_01287	0.18	-0.0
1,330,920	-		EFB2_01287	0.27	+0.5
1,330,959	+		EFB2_01287	0.35	-0.2
1,330,959	+		EFB2_01287	0.35	-2.6
1,330,960	-		EFB2_01287	0.36	-1.1
1,330,960	-		EFB2_01287	0.36	+1.1
1,330,960	-		EFB2_01287	0.36	+1.3
1,330,972	+		EFB2_01287	0.38	-1.8
1,330,972	+		EFB2_01287	0.38	-0.8
1,330,972	+		EFB2_01287	0.38	+1.3
1,330,972	+		EFB2_01287	0.38	-0.7
1,330,972	+		EFB2_01287	0.38	-2.3
1,330,972	+		EFB2_01287	0.38	+0.0
1,330,972	+		EFB2_01287	0.38	-2.3
1,330,973	-		EFB2_01287	0.38	+2.0
1,330,973	-		EFB2_01287	0.38	-0.3
1,330,973	-		EFB2_01287	0.38	-1.8
1,330,973	-		EFB2_01287	0.38	-1.4
1,330,987	+		EFB2_01287	0.41	+0.6
1,330,987	+		EFB2_01287	0.41	-1.3
1,330,987	+		EFB2_01287	0.41	+1.2
1,330,987	+		EFB2_01287	0.41	-1.0
1,330,987	+		EFB2_01287	0.41	-2.1
1,330,987	+		EFB2_01287	0.41	+0.7
1,330,987	+		EFB2_01287	0.41	+1.4
1,330,987	+		EFB2_01287	0.41	-0.2
1,330,987	+		EFB2_01287	0.41	-0.9
1,330,987	+		EFB2_01287	0.41	-1.5
1,330,987	+		EFB2_01287	0.41	+1.8
1,330,987	+		EFB2_01287	0.41	-0.6
1,330,987	+		EFB2_01287	0.41	-2.0
1,330,987	+		EFB2_01287	0.41	-1.3
1,330,987	+		EFB2_01287	0.41	-1.3
1,330,987	+		EFB2_01287	0.41	-0.4
1,330,987	+		EFB2_01287	0.41	+1.3
1,330,987	+		EFB2_01287	0.41	+0.4
1,330,987	+		EFB2_01287	0.41	-0.8
1,330,987	+		EFB2_01287	0.41	-1.6
1,330,987	+		EFB2_01287	0.41	-2.7
1,330,987	+		EFB2_01287	0.41	+0.2
1,330,987	+		EFB2_01287	0.41	-1.4
1,330,987	+		EFB2_01287	0.41	-1.6
1,330,987	+		EFB2_01287	0.41	+1.0
1,330,987	+		EFB2_01287	0.41	-0.9
1,330,987	+		EFB2_01287	0.41	+0.4
1,330,987	+		EFB2_01287	0.41	+0.4
1,330,987	+		EFB2_01287	0.41	+0.3
1,330,987	+		EFB2_01287	0.41	+0.4
1,330,988	-		EFB2_01287	0.41	+3.3
1,330,988	-		EFB2_01287	0.41	-3.1
1,330,988	-		EFB2_01287	0.41	-1.2
1,330,988	-		EFB2_01287	0.41	+0.2
1,330,988	-		EFB2_01287	0.41	+0.5
1,330,988	-		EFB2_01287	0.41	+0.7
1,330,988	-		EFB2_01287	0.41	-1.2
1,330,988	-		EFB2_01287	0.41	-3.1
1,330,988	-		EFB2_01287	0.41	+0.8
1,330,988	-		EFB2_01287	0.41	-1.2
1,330,988	-		EFB2_01287	0.41	-0.1
1,330,988	-		EFB2_01287	0.41	+0.1
1,330,988	-		EFB2_01287	0.41	-1.0
1,330,988	-		EFB2_01287	0.41	+0.6
1,330,988	-		EFB2_01287	0.41	-1.0
1,330,988	-		EFB2_01287	0.41	+1.6
1,330,988	-		EFB2_01287	0.41	-2.7
1,330,988	-		EFB2_01287	0.41	-2.2
1,330,988	-		EFB2_01287	0.41	-0.2
1,330,988	-		EFB2_01287	0.41	-1.4
1,330,988	-		EFB2_01287	0.41	-0.7
1,330,988	-		EFB2_01287	0.41	+0.4
1,331,010	-		EFB2_01287	0.46	+1.3
1,331,010	-		EFB2_01287	0.46	+0.1
1,331,010	-		EFB2_01287	0.46	-1.7
1,331,023	-		EFB2_01287	0.49	-1.1
1,331,023	-		EFB2_01287	0.49	+0.0
1,331,121	+		EFB2_01287	0.69	+0.3
1,331,122	-		EFB2_01287	0.69	+0.2
1,331,122	-		EFB2_01287	0.69	-0.7
1,331,161	+		EFB2_01287	0.77	-0.7
1,331,192	+		EFB2_01287	0.84	+1.4
1,331,222	+				+0.6
1,331,222	+				-1.9
1,331,222	+				-2.0
1,331,222	+				-1.6
1,331,222	+				-1.0
1,331,223	-				-1.0
1,331,223	-				-1.2
1,331,223	-				-0.1
1,331,223	-				+0.3
1,331,223	-				-0.5
1,331,226	+				+1.1
1,331,226	+				+1.3
1,331,227	-				+0.6
1,331,227	-				-1.1
1,331,227	-				-1.6
1,331,254	-				-0.2
1,331,254	-				+0.5
1,331,266	-				-0.7
1,331,276	+				+1.5
1,331,276	+				+0.9
1,331,276	+				+0.7
1,331,277	-				+0.7
1,331,277	-				-1.1
1,331,278	+				+2.6
1,331,278	+				+0.4
1,331,278	+				-2.4
1,331,278	+				-0.3
1,331,279	-				-2.2
1,331,279	-				-0.2
1,331,287	+				+2.3
1,331,287	+				+1.5
1,331,288	-				+0.5
1,331,326	+				+1.1
1,331,326	+				+0.1
1,331,326	+				+0.1
1,331,326	+				-3.1
1,331,326	+				-2.2
1,331,326	+				-0.9
1,331,326	+				-1.9
1,331,327	-				-1.0
1,331,327	-				+1.0
1,331,327	-				-0.1
1,331,327	-				-1.3
1,331,330	+				+0.2
1,331,330	+				-0.2
1,331,330	+				-0.6
1,331,330	+				+2.3
1,331,330	+				+0.1
1,331,330	+				+1.6
1,331,330	+				+1.9
1,331,330	+				+0.7
1,331,330	+				+0.6
1,331,330	+				-0.7
1,331,330	+				-0.0
1,331,330	+				+0.4
1,331,330	+				-0.0
1,331,330	+				+0.7
1,331,330	+				-2.0
1,331,330	+				-0.3
1,331,330	+				-1.6
1,331,330	+				+0.7
1,331,330	+				+0.8
1,331,330	+				-1.3
1,331,330	+				-1.9
1,331,330	+				-2.0
1,331,330	+				-1.6
1,331,330	+				+1.4
1,331,330	+				+1.4
1,331,331	-				-0.9
1,331,331	-				-0.6
1,331,331	-				+0.3
1,331,331	-				-2.5
1,331,331	-				+0.9
1,331,331	-				-0.4
1,331,331	-				+3.3
1,331,331	-				+0.2
1,331,331	-				-1.7
1,331,331	-				+1.0
1,331,331	-				-0.4
1,331,331	-				-0.0
1,331,331	-				-1.9
1,331,331	-				-1.9
1,331,331	-				-1.1
1,331,331	-				+2.6
1,331,331	-				-2.1
1,331,331	-				+0.1
1,331,331	-				-2.6
1,331,331	-				+2.3
1,331,331	-				+1.3
1,331,331	-				+0.6
1,331,331	-				-1.6
1,331,331	-				+1.3
1,331,331	-				-1.1
1,331,331	-				+0.3
1,331,331	-				+1.6
1,331,400	+				-0.7
1,331,400	+				-1.6
1,331,400	+				+1.3
1,331,400	+				-1.0
1,331,401	-				+1.3
1,331,401	-				-1.3
1,331,401	-				-0.1
1,331,401	-				-0.2
1,331,401	-				-0.8
1,331,411	+		EFB2_01288	0.10	-1.1
1,331,411	+		EFB2_01288	0.10	+0.4
1,331,411	+		EFB2_01288	0.10	+0.5
1,331,411	+		EFB2_01288	0.10	+0.2
1,331,411	+		EFB2_01288	0.10	-1.1
1,331,411	+		EFB2_01288	0.10	+1.8
1,331,411	+		EFB2_01288	0.10	+0.4
1,331,411	+		EFB2_01288	0.10	+1.3
1,331,411	+		EFB2_01288	0.10	-1.8
1,331,412	-		EFB2_01288	0.10	-1.7
1,331,412	-		EFB2_01288	0.10	-0.3
1,331,412	-		EFB2_01288	0.10	-1.3
1,331,412	-		EFB2_01288	0.10	+2.3
1,331,412	-		EFB2_01288	0.10	-0.2
1,331,412	-		EFB2_01288	0.10	-0.4
1,331,426	+		EFB2_01288	0.11	+0.4
1,331,426	+		EFB2_01288	0.11	-2.0
1,331,427	-		EFB2_01288	0.11	-0.3
1,331,472	+		EFB2_01288	0.15	+0.5
1,331,472	+		EFB2_01288	0.15	+0.5
1,331,472	+		EFB2_01288	0.15	-0.0
1,331,472	+		EFB2_01288	0.15	+1.9
1,331,472	+		EFB2_01288	0.15	+2.3
1,331,472	+		EFB2_01288	0.15	+1.7
1,331,472	+		EFB2_01288	0.15	-0.5
1,331,473	-		EFB2_01288	0.15	+0.3
1,331,473	-		EFB2_01288	0.15	+0.2
1,331,473	-		EFB2_01288	0.15	+0.1
1,331,473	-		EFB2_01288	0.15	+0.5
1,331,473	-		EFB2_01288	0.15	-0.8
1,331,499	+		EFB2_01288	0.17	-0.6
1,331,499	+		EFB2_01288	0.17	+0.8
1,331,499	+		EFB2_01288	0.17	-0.9
1,331,499	+		EFB2_01288	0.17	+2.8
1,331,499	+		EFB2_01288	0.17	-0.5
1,331,499	+		EFB2_01288	0.17	+1.6
1,331,499	+		EFB2_01288	0.17	-1.9
1,331,499	+		EFB2_01288	0.17	+0.6
1,331,499	+		EFB2_01288	0.17	+0.3
1,331,499	+		EFB2_01288	0.17	-1.5
1,331,500	-		EFB2_01288	0.17	+0.7
1,331,500	-		EFB2_01288	0.17	+0.7
1,331,500	-		EFB2_01288	0.17	-1.0
1,331,500	-		EFB2_01288	0.17	-2.6
1,331,500	-		EFB2_01288	0.17	+1.3
1,331,500	-		EFB2_01288	0.17	+0.4
1,331,500	-		EFB2_01288	0.17	-0.1
1,331,500	-		EFB2_01288	0.17	-1.5
1,331,500	-		EFB2_01288	0.17	-0.1
1,331,500	-		EFB2_01288	0.17	+1.0
1,331,500	-		EFB2_01288	0.17	-0.8
1,331,500	-		EFB2_01288	0.17	-0.7
1,331,500	-		EFB2_01288	0.17	+0.3
1,331,506	+		EFB2_01288	0.18	-2.7
1,331,506	+		EFB2_01288	0.18	-2.2
1,331,506	+		EFB2_01288	0.18	+0.4
1,331,506	+		EFB2_01288	0.18	+2.3
1,331,506	+		EFB2_01288	0.18	+0.6
1,331,507	-		EFB2_01288	0.18	+1.1
1,331,507	-		EFB2_01288	0.18	+1.2
1,331,507	-		EFB2_01288	0.18	-1.1
1,331,507	-		EFB2_01288	0.18	+0.8
1,331,507	-		EFB2_01288	0.18	-0.0
1,331,507	-		EFB2_01288	0.18	+0.4
1,331,507	-		EFB2_01288	0.18	-0.0
1,331,549	+		EFB2_01288	0.21	+3.0
1,331,549	+		EFB2_01288	0.21	+1.4
1,331,549	+		EFB2_01288	0.21	+0.6
1,331,549	+		EFB2_01288	0.21	+1.2
1,331,549	+		EFB2_01288	0.21	-0.9
1,331,549	+		EFB2_01288	0.21	-0.0
1,331,549	+		EFB2_01288	0.21	+1.5
1,331,549	+		EFB2_01288	0.21	+0.2
1,331,549	+		EFB2_01288	0.21	+1.6
1,331,550	-		EFB2_01288	0.22	-0.6
1,331,550	-		EFB2_01288	0.22	-0.1
1,331,550	-		EFB2_01288	0.22	-3.0
1,331,550	-		EFB2_01288	0.22	-1.6
1,331,550	-		EFB2_01288	0.22	-0.1
1,331,550	-		EFB2_01288	0.22	-2.2
1,331,550	-		EFB2_01288	0.22	-1.3
1,331,550	-		EFB2_01288	0.22	-2.2
1,331,550	-		EFB2_01288	0.22	-1.6
1,331,550	-		EFB2_01288	0.22	+1.3
1,331,550	-		EFB2_01288	0.22	+0.2
1,331,550	-		EFB2_01288	0.22	-2.4
1,331,550	-		EFB2_01288	0.22	-0.0
1,331,550	-		EFB2_01288	0.22	+1.1
1,331,627	+		EFB2_01288	0.28	-1.4
1,331,627	+		EFB2_01288	0.28	+0.4
1,331,636	+		EFB2_01288	0.29	-1.4
1,331,636	+		EFB2_01288	0.29	-1.4
1,331,636	+		EFB2_01288	0.29	+1.4
1,331,636	+		EFB2_01288	0.29	-0.5
1,331,636	+		EFB2_01288	0.29	+0.7
1,331,636	+		EFB2_01288	0.29	-0.7
1,331,637	-		EFB2_01288	0.29	+1.2
1,331,637	-		EFB2_01288	0.29	+0.1
1,331,637	-		EFB2_01288	0.29	+1.7
1,331,637	-		EFB2_01288	0.29	+1.0
1,331,637	-		EFB2_01288	0.29	-0.0
1,331,638	+		EFB2_01288	0.29	+0.7
1,331,638	+		EFB2_01288	0.29	+0.6
1,331,638	+		EFB2_01288	0.29	-0.0
1,331,638	+		EFB2_01288	0.29	-0.4
1,331,639	-		EFB2_01288	0.29	+2.1
1,331,639	-		EFB2_01288	0.29	-1.9
1,331,639	-		EFB2_01288	0.29	-1.9
1,331,639	-		EFB2_01288	0.29	+2.3
1,331,649	-		EFB2_01288	0.30	-2.1
1,331,664	+		EFB2_01288	0.31	+1.0
1,331,665	-		EFB2_01288	0.31	-2.1
1,331,667	+		EFB2_01288	0.31	-2.2