Strain Fitness in Escherichia fergusonii Becca around EFB2_01142

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,197,603	+		EFB2_01141	0.29	+0.1
1,197,603	+		EFB2_01141	0.29	+2.0
1,197,603	+		EFB2_01141	0.29	-0.6
1,197,603	+		EFB2_01141	0.29	-0.2
1,197,603	+		EFB2_01141	0.29	-0.1
1,197,603	+		EFB2_01141	0.29	-0.7
1,197,603	+		EFB2_01141	0.29	-0.3
1,197,603	+		EFB2_01141	0.29	+0.3
1,197,603	+		EFB2_01141	0.29	-1.0
1,197,603	+		EFB2_01141	0.29	-0.1
1,197,603	+		EFB2_01141	0.29	+0.6
1,197,603	+		EFB2_01141	0.29	+1.4
1,197,604	-		EFB2_01141	0.29	+0.6
1,197,604	-		EFB2_01141	0.29	-2.3
1,197,604	-		EFB2_01141	0.29	+1.6
1,197,604	-		EFB2_01141	0.29	+0.5
1,197,604	-		EFB2_01141	0.29	-1.5
1,197,604	-		EFB2_01141	0.29	-1.1
1,197,604	-		EFB2_01141	0.29	+0.0
1,197,604	-		EFB2_01141	0.29	-1.6
1,197,658	+		EFB2_01141	0.37	+1.7
1,197,658	+		EFB2_01141	0.37	-2.3
1,197,658	+		EFB2_01141	0.37	-0.5
1,197,747	+		EFB2_01141	0.50	-3.0
1,197,747	+		EFB2_01141	0.50	+1.9
1,197,747	+		EFB2_01141	0.50	-0.4
1,197,747	+		EFB2_01141	0.50	-0.3
1,197,747	+		EFB2_01141	0.50	-3.5
1,197,748	-		EFB2_01141	0.50	+1.0
1,197,748	-		EFB2_01141	0.50	-0.5
1,197,748	-		EFB2_01141	0.50	-1.5
1,197,771	+		EFB2_01141	0.54	-0.6
1,197,771	+		EFB2_01141	0.54	+1.7
1,197,771	+		EFB2_01141	0.54	-0.8
1,197,772	-		EFB2_01141	0.54	-0.4
1,197,772	-		EFB2_01141	0.54	+0.1
1,197,772	-		EFB2_01141	0.54	+0.7
1,197,772	-		EFB2_01141	0.54	+2.1
1,197,782	+		EFB2_01141	0.56	+1.2
1,197,782	+		EFB2_01141	0.56	-1.4
1,197,782	+		EFB2_01141	0.56	+0.6
1,197,782	+		EFB2_01141	0.56	+1.3
1,197,783	-		EFB2_01141	0.56	-1.7
1,197,783	-		EFB2_01141	0.56	+1.2
1,197,799	-		EFB2_01141	0.58	+0.7
1,197,812	+		EFB2_01141	0.60	+1.7
1,197,813	-		EFB2_01141	0.60	+0.3
1,197,824	+		EFB2_01141	0.62	-1.4
1,197,824	+		EFB2_01141	0.62	-1.6
1,197,824	+		EFB2_01141	0.62	+1.6
1,197,825	-		EFB2_01141	0.62	+0.1
1,197,825	-		EFB2_01141	0.62	+0.3
1,197,825	-		EFB2_01141	0.62	+0.1
1,197,828	+		EFB2_01141	0.62	-0.2
1,197,829	-		EFB2_01141	0.62	-0.3
1,197,829	-		EFB2_01141	0.62	+1.3
1,197,829	-		EFB2_01141	0.62	+3.7
1,197,841	+		EFB2_01141	0.64	-0.5
1,197,841	+		EFB2_01141	0.64	+0.7
1,197,842	-		EFB2_01141	0.64	-1.0
1,197,893	+		EFB2_01141	0.72	+1.0
1,197,893	+		EFB2_01141	0.72	-1.8
1,197,902	+		EFB2_01141	0.73	-0.1
1,197,902	+		EFB2_01141	0.73	-1.6
1,197,902	+		EFB2_01141	0.73	+0.2
1,197,902	+		EFB2_01141	0.73	+0.4
1,197,902	+		EFB2_01141	0.73	+0.1
1,197,902	+		EFB2_01141	0.73	+0.0
1,197,902	+		EFB2_01141	0.73	-1.1
1,197,902	+		EFB2_01141	0.73	+1.3
1,197,902	+		EFB2_01141	0.73	+0.6
1,197,902	+		EFB2_01141	0.73	+0.7
1,197,902	+		EFB2_01141	0.73	+1.3
1,197,903	-		EFB2_01141	0.74	+2.3
1,197,903	-		EFB2_01141	0.74	-1.6
1,197,903	-		EFB2_01141	0.74	+2.7
1,197,903	-		EFB2_01141	0.74	-2.7
1,197,903	-		EFB2_01141	0.74	-0.9
1,197,903	-		EFB2_01141	0.74	+0.3
1,197,903	-		EFB2_01141	0.74	+2.2
1,197,951	+		EFB2_01141	0.81	-0.2
1,197,951	+		EFB2_01141	0.81	+1.1
1,197,999	+		EFB2_01141	0.88	-2.6
1,198,007	+		EFB2_01141	0.89	+0.4
1,198,007	+		EFB2_01141	0.89	+0.9
1,198,007	+		EFB2_01141	0.89	+0.6
1,198,007	+		EFB2_01141	0.89	-0.2
1,198,007	+		EFB2_01141	0.89	-1.2
1,198,007	+		EFB2_01141	0.89	-2.5
1,198,007	+		EFB2_01141	0.89	-0.3
1,198,007	+		EFB2_01141	0.89	-1.2
1,198,007	+		EFB2_01141	0.89	+0.0
1,198,007	+		EFB2_01141	0.89	-3.5
1,198,008	-		EFB2_01141	0.89	+0.7
1,198,008	-		EFB2_01141	0.89	-1.2
1,198,008	-		EFB2_01141	0.89	-1.6
1,198,008	-		EFB2_01141	0.89	+0.7
1,198,008	-		EFB2_01141	0.89	+0.0
1,198,011	+		EFB2_01141	0.90	+1.5
1,198,011	+		EFB2_01141	0.90	-1.5
1,198,011	+		EFB2_01141	0.90	+0.6
1,198,011	+		EFB2_01141	0.90	-0.7
1,198,011	+		EFB2_01141	0.90	+1.3
1,198,012	-		EFB2_01141	0.90	-2.6
1,198,012	-		EFB2_01141	0.90	-0.1
1,198,012	-		EFB2_01141	0.90	-0.3
1,198,012	-		EFB2_01141	0.90	+1.0
1,198,012	-		EFB2_01141	0.90	+1.0
1,198,018	-				-2.0
1,198,059	+				-0.3
1,198,059	+				-0.4
1,198,059	+				+0.6
1,198,059	+				+0.6
1,198,060	-				+0.2
1,198,060	-				-0.1
1,198,060	-				+0.9
1,198,060	-				-0.3
1,198,060	-				-2.7
1,198,060	-				+1.1
1,198,060	-				+2.3
1,198,060	-				-0.7
1,198,060	-				-0.8
1,198,060	-				+0.9
1,198,060	-				+1.3
1,198,060	-				+0.2
1,198,060	-				-0.5
1,198,083	-				-3.0
1,198,090	+				+0.4
1,198,091	-				+0.4
1,198,091	-				-1.0
1,198,091	-				-0.1
1,198,091	-				-1.1
1,198,091	-				+0.9
1,198,092	+				-0.7
1,198,092	+				+1.1
1,198,092	+				-0.5
1,198,092	+				-1.2
1,198,092	+				+0.0
1,198,092	+				+0.0
1,198,093	-				+0.7
1,198,093	-				-3.2
1,198,093	-				+1.7
1,198,093	-				+0.8
1,198,099	+				+0.2
1,198,101	+				+1.5
1,198,101	+				-0.8
1,198,102	-				+0.3
1,198,102	-				+0.4
1,198,102	-				-1.8
1,198,102	-				-2.4
1,198,102	-				-1.8
1,198,102	-				-0.9
1,198,129	-				-1.8
1,198,136	+				+2.2
1,198,136	+				+0.1
1,198,136	+				-0.8
1,198,137	-				+1.8
1,198,137	-				-0.3
1,198,137	-				-0.8
1,198,137	-				-1.5
1,198,137	-				+1.2
1,198,139	-				-1.2
1,198,191	+				+0.1
1,198,192	-				+1.0
1,198,219	-				+0.5
1,198,242	-				+0.9
1,198,260	-				-2.3
1,198,260	-				+0.5
1,198,331	-				+1.3
1,198,353	+				-0.4
1,198,358	+				-0.1
1,198,358	+				+0.5
1,198,359	-				+0.9
1,198,359	-				-0.5
1,198,359	-				-1.4
1,198,359	-				-1.5
1,198,367	+				+0.7
1,198,368	-				+2.3
1,198,368	-				-1.5
1,198,391	-				-2.1
1,198,398	+				-1.3
1,198,399	-				+1.4
1,198,401	+				-2.3
1,198,401	+				+2.6
1,198,401	+				-1.9
1,198,401	+				-0.7
1,198,402	-				+0.5
1,198,404	+				+0.1
1,198,404	+				-2.6
1,198,404	+				+0.4
1,198,404	+				-0.1
1,198,404	+				+0.4
1,198,404	+				-2.7
1,198,404	+				+0.5
1,198,404	+				+1.9
1,198,404	+				+1.1
1,198,405	-				-0.5
1,198,405	-				-0.8
1,198,405	-				+0.3
1,198,405	-				-1.1
1,198,409	+				+1.1
1,198,410	-				-2.3
1,198,410	-				-0.6
1,198,410	-				-1.1
1,198,410	-				-0.9
1,198,415	+				-0.7
1,198,453	+				-0.4
1,198,453	+				+0.1
1,198,453	+				-0.1
1,198,453	+				+0.2
1,198,453	+				-0.4
1,198,453	+				-0.5
1,198,453	+				-1.5
1,198,453	+				-1.9
1,198,453	+				+0.5
1,198,453	+				-2.1
1,198,453	+				+0.5
1,198,454	-				-2.9
1,198,454	-				-2.3
1,198,454	-				+1.5
1,198,454	-				-2.6
1,198,454	-				-0.4
1,198,454	-				+0.4
1,198,454	-				-0.3
1,198,454	-				-0.4
1,198,454	-				-1.0
1,198,454	-				+0.6
1,198,494	+				-0.3
1,198,494	+				-0.8
1,198,494	+				+0.7
1,198,494	+				-2.5
1,198,494	+				-0.8
1,198,495	-				+2.9
1,198,495	-				-1.0
1,198,495	-				-0.3
1,198,495	-				+0.4
1,198,495	-				-0.5
1,198,495	-				+0.2
1,198,554	+				-0.1
1,198,579	+				+1.0
1,198,579	+				-1.9
1,198,579	+				+0.1
1,198,579	+				-0.0
1,198,579	+				+0.5
1,198,579	+				-2.6
1,198,579	+				-0.5
1,198,579	+				-0.7
1,198,579	+				-1.1
1,198,579	+				-0.3
1,198,579	+				+1.0
1,198,580	-				-0.2
1,198,580	-				+0.5
1,198,580	-				-1.1
1,198,580	-				-0.5
1,198,580	-				+0.1
1,198,580	-				-0.3
1,198,580	-				+0.8
1,198,580	-				+0.0
1,198,580	-				+1.6
1,198,589	+				-0.4
1,198,589	+				-0.5
1,198,590	-				+1.8
1,198,590	-				+1.0
1,198,609	+				-0.3
1,198,609	+				+1.7
1,198,610	-				-0.7
1,198,657	+		EFB2_01142	0.11	-1.4
1,198,657	+		EFB2_01142	0.11	-0.3
1,198,657	+		EFB2_01142	0.11	+0.7
1,198,657	+		EFB2_01142	0.11	-1.5
1,198,657	+		EFB2_01142	0.11	-2.1
1,198,657	+		EFB2_01142	0.11	-1.2
1,198,658	-		EFB2_01142	0.11	-1.3
1,198,658	-		EFB2_01142	0.11	-1.5
1,198,658	-		EFB2_01142	0.11	+0.3
1,198,658	-		EFB2_01142	0.11	-1.3
1,198,658	-		EFB2_01142	0.11	+0.5
1,198,678	+		EFB2_01142	0.13	-0.1
1,198,695	+		EFB2_01142	0.14	+0.0
1,198,695	+		EFB2_01142	0.14	-2.4
1,198,696	-		EFB2_01142	0.14	-0.5
1,198,706	+		EFB2_01142	0.14	+0.2
1,198,706	+		EFB2_01142	0.14	+1.0
1,198,707	-		EFB2_01142	0.14	-0.8
1,198,707	-		EFB2_01142	0.14	-0.1
1,198,707	-		EFB2_01142	0.14	-0.2
1,198,719	-		EFB2_01142	0.15	-0.2
1,198,726	+		EFB2_01142	0.16	-0.7
1,198,727	-		EFB2_01142	0.16	-0.9
1,198,841	-		EFB2_01142	0.24	-1.0
1,198,882	+		EFB2_01142	0.26	+0.5
1,198,882	+		EFB2_01142	0.26	-0.4
1,198,882	+		EFB2_01142	0.26	-2.4
1,198,882	+		EFB2_01142	0.26	+1.5
1,198,882	+		EFB2_01142	0.26	+0.1
1,198,882	+		EFB2_01142	0.26	-0.2
1,198,882	+		EFB2_01142	0.26	-2.4
1,198,882	+		EFB2_01142	0.26	-2.5
1,198,882	+		EFB2_01142	0.26	-1.7
1,198,882	+		EFB2_01142	0.26	-0.5
1,198,882	+		EFB2_01142	0.26	-0.5
1,198,882	+		EFB2_01142	0.26	+0.3
1,198,882	+		EFB2_01142	0.26	+3.9
1,198,882	+		EFB2_01142	0.26	+0.1
1,198,882	+		EFB2_01142	0.26	+0.3
1,198,882	+		EFB2_01142	0.26	-1.7
1,198,882	+		EFB2_01142	0.26	+1.5
1,198,882	+		EFB2_01142	0.26	+0.1
1,198,882	+		EFB2_01142	0.26	-0.3
1,198,882	+		EFB2_01142	0.26	-0.6
1,198,882	+		EFB2_01142	0.26	-2.4
1,198,882	+		EFB2_01142	0.26	+1.7
1,198,882	+		EFB2_01142	0.26	+1.3
1,198,882	+		EFB2_01142	0.26	-2.1
1,198,882	+		EFB2_01142	0.26	-0.7
1,198,883	-		EFB2_01142	0.26	+1.0
1,198,883	-		EFB2_01142	0.26	-2.3
1,198,883	-		EFB2_01142	0.26	-1.5
1,198,883	-		EFB2_01142	0.26	-1.9
1,198,883	-		EFB2_01142	0.26	+1.3
1,198,883	-		EFB2_01142	0.26	+0.6
1,198,883	-		EFB2_01142	0.26	-2.3
1,198,883	-		EFB2_01142	0.26	-2.6
1,198,883	-		EFB2_01142	0.26	+1.4
1,198,883	-		EFB2_01142	0.26	+0.8
1,198,883	-		EFB2_01142	0.26	+0.3
1,198,883	-		EFB2_01142	0.26	-0.5
1,198,883	-		EFB2_01142	0.26	+0.7
1,198,883	-		EFB2_01142	0.26	+1.5
1,198,883	-		EFB2_01142	0.26	+0.6
1,198,883	-		EFB2_01142	0.26	+0.8
1,198,883	-		EFB2_01142	0.26	-2.0
1,198,883	-		EFB2_01142	0.26	-0.2
1,198,883	-		EFB2_01142	0.26	-1.5
1,198,883	-		EFB2_01142	0.26	+1.7
1,198,883	-		EFB2_01142	0.26	+0.0
1,198,883	-		EFB2_01142	0.26	-1.5
1,198,883	-		EFB2_01142	0.26	-1.8
1,198,883	-		EFB2_01142	0.26	-0.7
1,198,883	-		EFB2_01142	0.26	-1.7
1,198,883	-		EFB2_01142	0.26	-0.2
1,198,890	+		EFB2_01142	0.27	+0.7
1,198,890	+		EFB2_01142	0.27	-0.9
1,198,890	+		EFB2_01142	0.27	-0.8
1,198,894	+		EFB2_01142	0.27	+1.5
1,198,895	-		EFB2_01142	0.27	+0.1
1,198,935	+		EFB2_01142	0.30	+1.6
1,198,935	+		EFB2_01142	0.30	-0.4
1,198,935	+		EFB2_01142	0.30	+1.2
1,198,935	+		EFB2_01142	0.30	+1.8
1,198,935	+		EFB2_01142	0.30	-2.6
1,198,936	-		EFB2_01142	0.30	+0.1
1,198,936	-		EFB2_01142	0.30	-0.8
1,198,936	-		EFB2_01142	0.30	+1.2
1,198,936	-		EFB2_01142	0.30	-0.3
1,198,936	-		EFB2_01142	0.30	+0.8
1,198,936	-		EFB2_01142	0.30	-1.3
1,198,936	-		EFB2_01142	0.30	-0.5
1,198,936	-		EFB2_01142	0.30	+0.0
1,198,936	-		EFB2_01142	0.30	+0.0
1,198,936	-		EFB2_01142	0.30	-0.5
1,198,936	-		EFB2_01142	0.30	-0.2
1,198,937	+		EFB2_01142	0.30	-2.8
1,198,937	+		EFB2_01142	0.30	-1.7
1,198,937	+		EFB2_01142	0.30	-1.4
1,198,937	+		EFB2_01142	0.30	-0.4
1,198,937	+		EFB2_01142	0.30	+0.2
1,198,937	+		EFB2_01142	0.30	-0.0
1,198,937	+		EFB2_01142	0.30	+1.0
1,198,937	+		EFB2_01142	0.30	-0.5
1,198,937	+		EFB2_01142	0.30	-4.0
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