Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EFB2_00672 and EFB2_00673 are separated by 112 nucleotides EFB2_00673 and EFB2_00674 are separated by 9 nucleotides EFB2_00674 and EFB2_00675 are separated by 19 nucleotides EFB2_00675 and EFB2_00676 overlap by 43 nucleotides
EFB2_00672: EFB2_00672 - hypothetical protein, at 679,105 to 680,145
_00672
EFB2_00673: EFB2_00673 - Osmotically-inducible protein Y, at 680,258 to 680,833
_00673
EFB2_00674: EFB2_00674 - DnaA initiator-associating protein DiaA, at 680,843 to 681,433
_00674
EFB2_00675: EFB2_00675 - hypothetical protein, at 681,453 to 681,848
_00675
EFB2_00676: EFB2_00676 - Penicillin-binding protein activator LpoA, at 681,806 to 683,842
_00676
Position (kb) 680
681
682 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 679.958 kb on + strand, within EFB2_00672 at 679.958 kb on + strand, within EFB2_00672 at 679.958 kb on + strand, within EFB2_00672 at 679.959 kb on - strand, within EFB2_00672 at 679.959 kb on - strand, within EFB2_00672 at 679.959 kb on - strand, within EFB2_00672 at 679.980 kb on + strand, within EFB2_00672 at 680.046 kb on + strand at 680.046 kb on + strand at 680.047 kb on - strand at 680.047 kb on - strand at 680.078 kb on + strand at 680.078 kb on + strand at 680.079 kb on - strand at 680.079 kb on - strand at 680.192 kb on + strand at 680.193 kb on - strand at 680.209 kb on + strand at 680.209 kb on + strand at 680.210 kb on - strand at 680.218 kb on + strand at 680.218 kb on + strand at 680.218 kb on + strand at 680.219 kb on - strand at 680.247 kb on + strand at 680.247 kb on + strand at 680.247 kb on + strand at 680.247 kb on + strand at 680.247 kb on + strand at 680.247 kb on + strand at 680.247 kb on + strand at 680.247 kb on + strand at 680.247 kb on + strand at 680.248 kb on - strand at 680.248 kb on - strand at 680.248 kb on - strand at 680.248 kb on - strand at 680.248 kb on - strand at 680.248 kb on - strand at 680.259 kb on + strand at 680.259 kb on + strand at 680.260 kb on - strand at 680.260 kb on - strand at 680.260 kb on - strand at 680.260 kb on - strand at 680.260 kb on - strand at 680.260 kb on - strand at 680.263 kb on + strand at 680.263 kb on + strand at 680.263 kb on + strand at 680.263 kb on + strand at 680.263 kb on + strand at 680.264 kb on - strand at 680.264 kb on - strand at 680.264 kb on - strand at 680.264 kb on - strand at 680.272 kb on + strand at 680.272 kb on + strand at 680.273 kb on - strand at 680.273 kb on - strand at 680.273 kb on - strand at 680.281 kb on + strand at 680.281 kb on + strand at 680.281 kb on + strand at 680.281 kb on + strand at 680.281 kb on + strand at 680.282 kb on - strand at 680.282 kb on - strand at 680.282 kb on - strand at 680.282 kb on - strand at 680.285 kb on + strand at 680.286 kb on - strand at 680.286 kb on - strand at 680.317 kb on + strand, within EFB2_00673 at 680.318 kb on - strand, within EFB2_00673 at 680.318 kb on - strand, within EFB2_00673 at 680.318 kb on - strand, within EFB2_00673 at 680.438 kb on + strand, within EFB2_00673 at 680.438 kb on + strand, within EFB2_00673 at 680.438 kb on + strand, within EFB2_00673 at 680.438 kb on + strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.439 kb on - strand, within EFB2_00673 at 680.458 kb on + strand, within EFB2_00673 at 680.459 kb on - strand, within EFB2_00673 at 680.459 kb on - strand, within EFB2_00673 at 680.459 kb on - strand, within EFB2_00673 at 680.459 kb on - strand, within EFB2_00673 at 680.459 kb on - strand, within EFB2_00673 at 680.510 kb on - strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.511 kb on + strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.512 kb on - strand, within EFB2_00673 at 680.531 kb on + strand, within EFB2_00673 at 680.531 kb on + strand, within EFB2_00673 at 680.531 kb on + strand, within EFB2_00673 at 680.531 kb on + strand, within EFB2_00673 at 680.532 kb on - strand, within EFB2_00673 at 680.532 kb on - strand, within EFB2_00673 at 680.532 kb on - strand, within EFB2_00673 at 680.532 kb on - strand, within EFB2_00673 at 680.532 kb on - strand, within EFB2_00673 at 680.539 kb on + strand, within EFB2_00673 at 680.539 kb on + strand, within EFB2_00673 at 680.540 kb on - strand, within EFB2_00673 at 680.540 kb on - strand, within EFB2_00673 at 680.610 kb on + strand, within EFB2_00673 at 680.610 kb on + strand, within EFB2_00673 at 680.610 kb on + strand, within EFB2_00673 at 680.618 kb on + strand, within EFB2_00673 at 680.618 kb on + strand, within EFB2_00673 at 680.619 kb on - strand, within EFB2_00673 at 680.619 kb on - strand, within EFB2_00673 at 680.619 kb on - strand, within EFB2_00673 at 680.619 kb on - strand, within EFB2_00673 at 680.619 kb on - strand, within EFB2_00673 at 680.619 kb on - strand, within EFB2_00673 at 680.619 kb on - strand, within EFB2_00673 at 680.623 kb on + strand, within EFB2_00673 at 680.624 kb on - strand, within EFB2_00673 at 680.624 kb on - strand, within EFB2_00673 at 680.624 kb on - strand, within EFB2_00673 at 680.624 kb on - strand, within EFB2_00673 at 680.641 kb on + strand, within EFB2_00673 at 680.642 kb on - strand, within EFB2_00673 at 680.642 kb on - strand, within EFB2_00673 at 680.642 kb on - strand, within EFB2_00673 at 680.689 kb on + strand, within EFB2_00673 at 680.699 kb on + strand, within EFB2_00673 at 680.699 kb on + strand, within EFB2_00673 at 680.699 kb on + strand, within EFB2_00673 at 680.699 kb on + strand, within EFB2_00673 at 680.700 kb on - strand, within EFB2_00673 at 680.700 kb on - strand, within EFB2_00673 at 680.700 kb on - strand, within EFB2_00673 at 680.700 kb on - strand, within EFB2_00673 at 680.803 kb on + strand at 680.803 kb on + strand at 680.803 kb on + strand at 680.803 kb on + strand at 680.804 kb on - strand at 680.804 kb on - strand at 680.804 kb on - strand at 680.804 kb on - strand at 680.804 kb on - strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.835 kb on + strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.836 kb on - strand at 680.844 kb on + strand at 680.844 kb on + strand at 680.845 kb on - strand at 680.845 kb on - strand at 680.897 kb on + strand at 680.898 kb on - strand at 680.908 kb on + strand, within EFB2_00674 at 680.908 kb on + strand, within EFB2_00674 at 680.908 kb on + strand, within EFB2_00674 at 680.908 kb on + strand, within EFB2_00674 at 680.909 kb on - strand, within EFB2_00674 at 680.909 kb on - strand, within EFB2_00674 at 680.909 kb on - strand, within EFB2_00674 at 680.909 kb on - strand, within EFB2_00674 at 680.909 kb on - strand, within EFB2_00674 at 680.909 kb on - strand, within EFB2_00674 at 680.932 kb on + strand, within EFB2_00674 at 680.932 kb on + strand, within EFB2_00674 at 680.932 kb on + strand, within EFB2_00674 at 680.932 kb on + strand, within EFB2_00674 at 680.932 kb on + strand, within EFB2_00674 at 680.933 kb on - strand, within EFB2_00674 at 680.933 kb on - strand, within EFB2_00674 at 680.973 kb on - strand, within EFB2_00674 at 681.000 kb on + strand, within EFB2_00674 at 681.001 kb on - strand, within EFB2_00674 at 681.001 kb on - strand, within EFB2_00674 at 681.026 kb on - strand, within EFB2_00674 at 681.026 kb on - strand, within EFB2_00674 at 681.048 kb on - strand, within EFB2_00674 at 681.048 kb on - strand, within EFB2_00674 at 681.056 kb on + strand, within EFB2_00674 at 681.057 kb on - strand, within EFB2_00674 at 681.057 kb on - strand, within EFB2_00674 at 681.093 kb on - strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.098 kb on + strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.099 kb on - strand, within EFB2_00674 at 681.138 kb on + strand, within EFB2_00674 at 681.138 kb on + strand, within EFB2_00674 at 681.138 kb on + strand, within EFB2_00674 at 681.138 kb on + strand, within EFB2_00674 at 681.138 kb on + strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.139 kb on - strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.152 kb on + strand, within EFB2_00674 at 681.153 kb on - strand, within EFB2_00674 at 681.153 kb on - strand, within EFB2_00674 at 681.153 kb on - strand, within EFB2_00674 at 681.153 kb on - strand, within EFB2_00674 at 681.153 kb on - strand, within EFB2_00674 at 681.153 kb on - strand, within EFB2_00674 at 681.153 kb on - strand, within EFB2_00674 at 681.153 kb on - strand, within EFB2_00674 at 681.153 kb on - strand, within EFB2_00674 at 681.177 kb on - strand, within EFB2_00674 at 681.187 kb on + strand, within EFB2_00674 at 681.187 kb on + strand, within EFB2_00674 at 681.188 kb on - strand, within EFB2_00674 at 681.188 kb on - strand, within EFB2_00674 at 681.188 kb on - strand, within EFB2_00674 at 681.188 kb on - strand, within EFB2_00674 at 681.188 kb on - strand, within EFB2_00674 at 681.193 kb on + strand, within EFB2_00674 at 681.193 kb on + strand, within EFB2_00674 at 681.193 kb on + strand, within EFB2_00674 at 681.193 kb on + strand, within EFB2_00674 at 681.193 kb on + strand, within EFB2_00674 at 681.194 kb on - strand, within EFB2_00674 at 681.194 kb on - strand, within EFB2_00674 at 681.194 kb on - strand, within EFB2_00674 at 681.194 kb on - strand, within EFB2_00674 at 681.194 kb on - strand, within EFB2_00674 at 681.194 kb on - strand, within EFB2_00674 at 681.194 kb on - strand, within EFB2_00674 at 681.194 kb on - strand, within EFB2_00674 at 681.197 kb on + strand, within EFB2_00674 at 681.197 kb on + strand, within EFB2_00674 at 681.198 kb on - strand, within EFB2_00674 at 681.198 kb on - strand, within EFB2_00674 at 681.198 kb on - strand, within EFB2_00674 at 681.198 kb on - strand, within EFB2_00674 at 681.198 kb on - strand, within EFB2_00674 at 681.198 kb on - strand, within EFB2_00674 at 681.198 kb on - strand, within EFB2_00674 at 681.198 kb on - strand, within EFB2_00674 at 681.198 kb on - strand, within EFB2_00674 at 681.212 kb on + strand, within EFB2_00674 at 681.212 kb on + strand, within EFB2_00674 at 681.213 kb on - strand, within EFB2_00674 at 681.213 kb on - strand, within EFB2_00674 at 681.213 kb on - strand, within EFB2_00674 at 681.289 kb on + strand, within EFB2_00674 at 681.289 kb on + strand, within EFB2_00674 at 681.418 kb on + strand at 681.418 kb on + strand at 681.418 kb on + strand at 681.418 kb on + strand at 681.418 kb on + strand at 681.419 kb on - strand at 681.419 kb on - strand at 681.419 kb on - strand at 681.436 kb on + strand at 681.436 kb on + strand at 681.436 kb on + strand at 681.436 kb on + strand at 681.436 kb on + strand at 681.437 kb on - strand at 681.444 kb on - strand at 681.444 kb on - strand at 681.444 kb on - strand at 681.450 kb on + strand at 681.450 kb on + strand at 681.450 kb on + strand at 681.450 kb on + strand at 681.450 kb on + strand at 681.450 kb on + strand at 681.451 kb on - strand at 681.451 kb on - strand at 681.451 kb on - strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.467 kb on + strand at 681.467 kb on + strand at 681.468 kb on - strand at 681.468 kb on - strand at 681.479 kb on + strand at 681.479 kb on + strand at 681.479 kb on + strand at 681.479 kb on + strand at 681.480 kb on - strand at 681.510 kb on + strand, within EFB2_00675 at 681.536 kb on + strand, within EFB2_00675 at 681.551 kb on + strand, within EFB2_00675 at 681.551 kb on + strand, within EFB2_00675 at 681.551 kb on + strand, within EFB2_00675 at 681.552 kb on - strand, within EFB2_00675 at 681.552 kb on - strand, within EFB2_00675 at 681.552 kb on - strand, within EFB2_00675 at 681.582 kb on + strand, within EFB2_00675 at 681.582 kb on + strand, within EFB2_00675 at 681.582 kb on + strand, within EFB2_00675 at 681.585 kb on + strand, within EFB2_00675 at 681.690 kb on + strand, within EFB2_00675 at 681.690 kb on + strand, within EFB2_00675 at 681.691 kb on - strand, within EFB2_00675 at 681.691 kb on - strand, within EFB2_00675 at 681.741 kb on + strand, within EFB2_00675 at 681.741 kb on + strand, within EFB2_00675 at 681.742 kb on - strand, within EFB2_00675 at 681.821 kb on + strand at 681.821 kb on + strand at 681.821 kb on + strand at 681.822 kb on - strand at 681.822 kb on - strand at 681.838 kb on - strand at 681.838 kb on - strand at 681.838 kb on - strand at 681.838 kb on - strand at 681.838 kb on - strand at 681.838 kb on - strand at 681.842 kb on + strand at 681.842 kb on + strand at 681.842 kb on + strand at 681.842 kb on + strand at 681.842 kb on + strand at 681.842 kb on + strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.843 kb on - strand at 681.851 kb on + strand at 681.851 kb on + strand at 681.852 kb on - strand at 681.852 kb on - strand at 681.852 kb on - strand at 681.852 kb on - strand at 681.852 kb on - strand at 681.862 kb on + strand at 681.862 kb on + strand at 681.898 kb on + strand at 681.898 kb on + strand at 681.901 kb on + strand at 681.902 kb on - strand at 681.902 kb on - strand at 681.902 kb on - strand at 681.902 kb on - strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.981 kb on + strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 681.982 kb on - strand at 682.045 kb on + strand, within EFB2_00676 at 682.074 kb on + strand, within EFB2_00676 at 682.075 kb on - strand, within EFB2_00676 at 682.143 kb on + strand, within EFB2_00676 at 682.143 kb on + strand, within EFB2_00676 at 682.143 kb on + strand, within EFB2_00676 at 682.143 kb on + strand, within EFB2_00676 at 682.144 kb on - strand, within EFB2_00676 at 682.144 kb on - strand, within EFB2_00676 at 682.144 kb on - strand, within EFB2_00676 at 682.195 kb on + strand, within EFB2_00676 at 682.195 kb on + strand, within EFB2_00676 at 682.195 kb on + strand, within EFB2_00676 at 682.195 kb on + strand, within EFB2_00676 at 682.196 kb on - strand, within EFB2_00676 at 682.196 kb on - strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.227 kb on + strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.228 kb on - strand, within EFB2_00676 at 682.253 kb on - strand, within EFB2_00676 at 682.253 kb on - strand, within EFB2_00676 at 682.337 kb on - strand, within EFB2_00676 at 682.337 kb on - strand, within EFB2_00676 at 682.388 kb on + strand, within EFB2_00676 at 682.389 kb on - strand, within EFB2_00676
Per-strain Table
Position Strand Gene LocusTag Fraction phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) remove 679,958 + EFB2_00672 0.82 -1.4 679,958 + EFB2_00672 0.82 -0.6 679,958 + EFB2_00672 0.82 -2.4 679,959 - EFB2_00672 0.82 +0.6 679,959 - EFB2_00672 0.82 -0.3 679,959 - EFB2_00672 0.82 +0.2 679,980 + EFB2_00672 0.84 -1.5 680,046 + -1.0 680,046 + -0.1 680,047 - +0.1 680,047 - +0.3 680,078 + -0.8 680,078 + +1.6 680,079 - +0.9 680,079 - -0.1 680,192 + +0.2 680,193 - +2.1 680,209 + -2.2 680,209 + +0.4 680,210 - +1.1 680,218 + +0.0 680,218 + -0.4 680,218 + -1.4 680,219 - -2.2 680,247 + -1.3 680,247 + -0.3 680,247 + -2.4 680,247 + +0.1 680,247 + +0.7 680,247 + +1.3 680,247 + -0.5 680,247 + +0.7 680,247 + +0.5 680,248 - -0.5 680,248 - +0.0 680,248 - -3.2 680,248 - -1.6 680,248 - +1.0 680,248 - -0.1 680,259 + -0.9 680,259 + -2.8 680,260 - +1.1 680,260 - -2.6 680,260 - +1.0 680,260 - -3.3 680,260 - -2.1 680,260 - -1.2 680,263 + -1.4 680,263 + +0.6 680,263 + +0.1 680,263 + -0.7 680,263 + +0.1 680,264 - -1.4 680,264 - +0.2 680,264 - +0.3 680,264 - +0.5 680,272 + -0.3 680,272 + +0.8 680,273 - -1.2 680,273 - +0.5 680,273 - +0.5 680,281 + -1.9 680,281 + +1.1 680,281 + +0.5 680,281 + +0.4 680,281 + +0.1 680,282 - -0.3 680,282 - -0.5 680,282 - +1.6 680,282 - -0.3 680,285 + -0.9 680,286 - -1.6 680,286 - -0.5 680,317 + EFB2_00673 0.10 +1.8 680,318 - EFB2_00673 0.10 -0.8 680,318 - EFB2_00673 0.10 -0.1 680,318 - EFB2_00673 0.10 -3.7 680,438 + EFB2_00673 0.31 -0.4 680,438 + EFB2_00673 0.31 -1.2 680,438 + EFB2_00673 0.31 +0.1 680,438 + EFB2_00673 0.31 -0.5 680,439 - EFB2_00673 0.31 +1.0 680,439 - EFB2_00673 0.31 +1.2 680,439 - EFB2_00673 0.31 -0.6 680,439 - EFB2_00673 0.31 -0.2 680,439 - EFB2_00673 0.31 -0.7 680,439 - EFB2_00673 0.31 -1.3 680,439 - EFB2_00673 0.31 +0.1 680,439 - EFB2_00673 0.31 -0.1 680,439 - EFB2_00673 0.31 -1.5 680,439 - EFB2_00673 0.31 +0.1 680,439 - EFB2_00673 0.31 -1.5 680,439 - EFB2_00673 0.31 -2.8 680,439 - EFB2_00673 0.31 -0.7 680,458 + EFB2_00673 0.35 +0.5 680,459 - EFB2_00673 0.35 +0.8 680,459 - EFB2_00673 0.35 -0.3 680,459 - EFB2_00673 0.35 -2.4 680,459 - EFB2_00673 0.35 -0.2 680,459 - EFB2_00673 0.35 +0.2 680,510 - EFB2_00673 0.44 -0.6 680,511 + EFB2_00673 0.44 +0.2 680,511 + EFB2_00673 0.44 -0.0 680,511 + EFB2_00673 0.44 -0.9 680,511 + EFB2_00673 0.44 -0.2 680,511 + EFB2_00673 0.44 +0.8 680,511 + EFB2_00673 0.44 -0.3 680,511 + EFB2_00673 0.44 -2.0 680,511 + EFB2_00673 0.44 -0.3 680,511 + EFB2_00673 0.44 -1.2 680,511 + EFB2_00673 0.44 +1.7 680,511 + EFB2_00673 0.44 -0.0 680,511 + EFB2_00673 0.44 -1.5 680,511 + EFB2_00673 0.44 +1.1 680,511 + EFB2_00673 0.44 -0.1 680,511 + EFB2_00673 0.44 +0.8 680,511 + EFB2_00673 0.44 +2.2 680,512 - EFB2_00673 0.44 +0.1 680,512 - EFB2_00673 0.44 +2.1 680,512 - EFB2_00673 0.44 -0.1 680,512 - EFB2_00673 0.44 -0.3 680,512 - EFB2_00673 0.44 -1.6 680,512 - EFB2_00673 0.44 +1.4 680,512 - EFB2_00673 0.44 -2.0 680,512 - EFB2_00673 0.44 +0.8 680,512 - EFB2_00673 0.44 +0.3 680,512 - EFB2_00673 0.44 -1.2 680,512 - EFB2_00673 0.44 -0.8 680,512 - EFB2_00673 0.44 +1.5 680,512 - EFB2_00673 0.44 +0.4 680,531 + EFB2_00673 0.47 -0.5 680,531 + EFB2_00673 0.47 -2.3 680,531 + EFB2_00673 0.47 -0.1 680,531 + EFB2_00673 0.47 -0.5 680,532 - EFB2_00673 0.48 -1.4 680,532 - EFB2_00673 0.48 +1.0 680,532 - EFB2_00673 0.48 +0.4 680,532 - EFB2_00673 0.48 -0.1 680,532 - EFB2_00673 0.48 -2.9 680,539 + EFB2_00673 0.49 -0.4 680,539 + EFB2_00673 0.49 -1.1 680,540 - EFB2_00673 0.49 +0.5 680,540 - EFB2_00673 0.49 +0.5 680,610 + EFB2_00673 0.61 -3.0 680,610 + EFB2_00673 0.61 -0.3 680,610 + EFB2_00673 0.61 +1.1 680,618 + EFB2_00673 0.62 -0.4 680,618 + EFB2_00673 0.62 +0.2 680,619 - EFB2_00673 0.63 -0.2 680,619 - EFB2_00673 0.63 -1.8 680,619 - EFB2_00673 0.63 +0.1 680,619 - EFB2_00673 0.63 +0.5 680,619 - EFB2_00673 0.63 +0.3 680,619 - EFB2_00673 0.63 -0.7 680,619 - EFB2_00673 0.63 +0.1 680,623 + EFB2_00673 0.63 -1.7 680,624 - EFB2_00673 0.64 -2.0 680,624 - EFB2_00673 0.64 +1.1 680,624 - EFB2_00673 0.64 +1.5 680,624 - EFB2_00673 0.64 +0.8 680,641 + EFB2_00673 0.66 +1.3 680,642 - EFB2_00673 0.67 +1.7 680,642 - EFB2_00673 0.67 -1.1 680,642 - EFB2_00673 0.67 +1.3 680,689 + EFB2_00673 0.75 +0.9 680,699 + EFB2_00673 0.77 -2.0 680,699 + EFB2_00673 0.77 +1.0 680,699 + EFB2_00673 0.77 -0.5 680,699 + EFB2_00673 0.77 -0.6 680,700 - EFB2_00673 0.77 +0.4 680,700 - EFB2_00673 0.77 +0.8 680,700 - EFB2_00673 0.77 -1.0 680,700 - EFB2_00673 0.77 +0.2 680,803 + +0.9 680,803 + -1.1 680,803 + +0.7 680,803 + +0.3 680,804 - +1.1 680,804 - +0.0 680,804 - -0.2 680,804 - -0.9 680,804 - +0.9 680,835 + -0.4 680,835 + -2.5 680,835 + -1.8 680,835 + -0.7 680,835 + +0.6 680,835 + -0.4 680,835 + -0.4 680,835 + -0.6 680,835 + -0.4 680,835 + -1.8 680,835 + -0.2 680,835 + +1.2 680,835 + +1.2 680,835 + +0.4 680,835 + +1.6 680,835 + +0.9 680,835 + -0.9 680,835 + +1.0 680,835 + +0.8 680,836 - +0.7 680,836 - +0.7 680,836 - +1.3 680,836 - -0.3 680,836 - -0.6 680,836 - -0.4 680,836 - +2.0 680,836 - -0.3 680,836 - -1.6 680,836 - -0.6 680,836 - -1.7 680,836 - +0.7 680,836 - +0.2 680,844 + +0.3 680,844 + +0.7 680,845 - -2.0 680,845 - +0.3 680,897 + -1.7 680,898 - -3.0 680,908 + EFB2_00674 0.11 -0.3 680,908 + EFB2_00674 0.11 -0.5 680,908 + EFB2_00674 0.11 -2.2 680,908 + EFB2_00674 0.11 -1.2 680,909 - EFB2_00674 0.11 -2.6 680,909 - EFB2_00674 0.11 -1.7 680,909 - EFB2_00674 0.11 -1.0 680,909 - EFB2_00674 0.11 -0.5 680,909 - EFB2_00674 0.11 +0.5 680,909 - EFB2_00674 0.11 -0.5 680,932 + EFB2_00674 0.15 -0.2 680,932 + EFB2_00674 0.15 -0.9 680,932 + EFB2_00674 0.15 +0.8 680,932 + EFB2_00674 0.15 -0.3 680,932 + EFB2_00674 0.15 +1.3 680,933 - EFB2_00674 0.15 -0.8 680,933 - EFB2_00674 0.15 -0.2 680,973 - EFB2_00674 0.22 +1.5 681,000 + EFB2_00674 0.27 +0.3 681,001 - EFB2_00674 0.27 +0.2 681,001 - EFB2_00674 0.27 -0.8 681,026 - EFB2_00674 0.31 -1.5 681,026 - EFB2_00674 0.31 -1.2 681,048 - EFB2_00674 0.35 -1.0 681,048 - EFB2_00674 0.35 +1.4 681,056 + EFB2_00674 0.36 +1.2 681,057 - EFB2_00674 0.36 -0.3 681,057 - EFB2_00674 0.36 -0.8 681,093 - EFB2_00674 0.42 +0.3 681,098 + EFB2_00674 0.43 +0.1 681,098 + EFB2_00674 0.43 -0.3 681,098 + EFB2_00674 0.43 -2.5 681,098 + EFB2_00674 0.43 +0.8 681,098 + EFB2_00674 0.43 -1.0 681,098 + EFB2_00674 0.43 -1.4 681,098 + EFB2_00674 0.43 -0.6 681,098 + EFB2_00674 0.43 -3.0 681,098 + EFB2_00674 0.43 +0.5 681,098 + EFB2_00674 0.43 -1.2 681,098 + EFB2_00674 0.43 +0.2 681,098 + EFB2_00674 0.43 -1.5 681,098 + EFB2_00674 0.43 -2.8 681,098 + EFB2_00674 0.43 -0.1 681,098 + EFB2_00674 0.43 -0.7 681,098 + EFB2_00674 0.43 -0.3 681,098 + EFB2_00674 0.43 +2.6 681,098 + EFB2_00674 0.43 +1.0 681,098 + EFB2_00674 0.43 -2.0 681,098 + EFB2_00674 0.43 +1.6 681,098 + EFB2_00674 0.43 -0.7 681,098 + EFB2_00674 0.43 -0.5 681,098 + EFB2_00674 0.43 +0.3 681,098 + EFB2_00674 0.43 -1.2 681,098 + EFB2_00674 0.43 -1.0 681,098 + EFB2_00674 0.43 -0.8 681,098 + EFB2_00674 0.43 +1.7 681,098 + EFB2_00674 0.43 -1.6 681,098 + EFB2_00674 0.43 -2.9 681,098 + EFB2_00674 0.43 +1.2 681,098 + EFB2_00674 0.43 -0.9 681,098 + EFB2_00674 0.43 -2.5 681,098 + EFB2_00674 0.43 -3.2 681,098 + EFB2_00674 0.43 -1.5 681,098 + EFB2_00674 0.43 -1.0 681,098 + EFB2_00674 0.43 -0.8 681,098 + EFB2_00674 0.43 -2.6 681,098 + EFB2_00674 0.43 +1.3 681,098 + EFB2_00674 0.43 -0.5 681,098 + EFB2_00674 0.43 +1.4 681,098 + EFB2_00674 0.43 -0.0 681,099 - EFB2_00674 0.43 -0.2 681,099 - EFB2_00674 0.43 +0.9 681,099 - EFB2_00674 0.43 -0.1 681,099 - EFB2_00674 0.43 -1.0 681,099 - EFB2_00674 0.43 -2.0 681,099 - EFB2_00674 0.43 -3.1 681,099 - EFB2_00674 0.43 +0.8 681,099 - EFB2_00674 0.43 -0.9 681,099 - EFB2_00674 0.43 +0.2 681,099 - EFB2_00674 0.43 -1.9 681,099 - EFB2_00674 0.43 -3.4 681,099 - EFB2_00674 0.43 -0.7 681,099 - EFB2_00674 0.43 -3.2 681,099 - EFB2_00674 0.43 -3.4 681,099 - EFB2_00674 0.43 -2.3 681,099 - EFB2_00674 0.43 -1.9 681,099 - EFB2_00674 0.43 -1.5 681,099 - EFB2_00674 0.43 +3.1 681,099 - EFB2_00674 0.43 -0.5 681,099 - EFB2_00674 0.43 -2.5 681,099 - EFB2_00674 0.43 -0.4 681,099 - EFB2_00674 0.43 -0.0 681,099 - EFB2_00674 0.43 -1.7 681,099 - EFB2_00674 0.43 -0.4 681,099 - EFB2_00674 0.43 +0.3 681,099 - EFB2_00674 0.43 -0.8 681,099 - EFB2_00674 0.43 -0.9 681,099 - EFB2_00674 0.43 -1.2 681,099 - EFB2_00674 0.43 -1.7 681,099 - EFB2_00674 0.43 +0.0 681,099 - EFB2_00674 0.43 -4.0 681,099 - EFB2_00674 0.43 +0.3 681,099 - EFB2_00674 0.43 +0.8 681,099 - EFB2_00674 0.43 +0.1 681,099 - EFB2_00674 0.43 +0.6 681,099 - EFB2_00674 0.43 -1.1 681,099 - EFB2_00674 0.43 -2.4 681,099 - EFB2_00674 0.43 -1.1 681,099 - EFB2_00674 0.43 +0.8 681,099 - EFB2_00674 0.43 -1.8 681,099 - EFB2_00674 0.43 +0.4 681,099 - EFB2_00674 0.43 +1.3 681,099 - EFB2_00674 0.43 -1.5 681,099 - EFB2_00674 0.43 -1.3 681,099 - EFB2_00674 0.43 -0.0 681,099 - EFB2_00674 0.43 -0.4 681,099 - EFB2_00674 0.43 -1.2 681,099 - EFB2_00674 0.43 -0.9 681,099 - EFB2_00674 0.43 +0.3 681,099 - EFB2_00674 0.43 +0.1 681,099 - EFB2_00674 0.43 +0.8 681,099 - EFB2_00674 0.43 -1.6 681,099 - EFB2_00674 0.43 +0.1 681,099 - EFB2_00674 0.43 -1.2 681,099 - EFB2_00674 0.43 -2.0 681,099 - EFB2_00674 0.43 -0.2 681,099 - EFB2_00674 0.43 -0.4 681,099 - EFB2_00674 0.43 -3.2 681,099 - EFB2_00674 0.43 -0.3 681,099 - EFB2_00674 0.43 -0.6 681,099 - EFB2_00674 0.43 -1.4 681,099 - EFB2_00674 0.43 -1.0 681,099 - EFB2_00674 0.43 -2.6 681,138 + EFB2_00674 0.50 +0.6 681,138 + EFB2_00674 0.50 -3.8 681,138 + EFB2_00674 0.50 +0.0 681,138 + EFB2_00674 0.50 +1.3 681,138 + EFB2_00674 0.50 -1.4 681,139 - EFB2_00674 0.50 -2.7 681,139 - EFB2_00674 0.50 -0.8 681,139 - EFB2_00674 0.50 -1.9 681,139 - EFB2_00674 0.50 -2.7 681,139 - EFB2_00674 0.50 -2.4 681,139 - EFB2_00674 0.50 -1.4 681,139 - EFB2_00674 0.50 -0.7 681,139 - EFB2_00674 0.50 -2.5 681,139 - EFB2_00674 0.50 +0.7 681,139 - EFB2_00674 0.50 -0.7 681,139 - EFB2_00674 0.50 -0.5 681,152 + EFB2_00674 0.52 -0.6 681,152 + EFB2_00674 0.52 -1.9 681,152 + EFB2_00674 0.52 +2.5 681,152 + EFB2_00674 0.52 -2.4 681,152 + EFB2_00674 0.52 -2.2 681,152 + EFB2_00674 0.52 +0.2 681,152 + EFB2_00674 0.52 -1.0 681,152 + EFB2_00674 0.52 -1.4 681,152 + EFB2_00674 0.52 -0.2 681,152 + EFB2_00674 0.52 -0.7 681,153 - EFB2_00674 0.52 -0.9 681,153 - EFB2_00674 0.52 -1.3 681,153 - EFB2_00674 0.52 -2.2 681,153 - EFB2_00674 0.52 -0.5 681,153 - EFB2_00674 0.52 -0.9 681,153 - EFB2_00674 0.52 +0.2 681,153 - EFB2_00674 0.52 +0.1 681,153 - EFB2_00674 0.52 +0.3 681,153 - EFB2_00674 0.52 +0.6 681,177 - EFB2_00674 0.57 -0.6 681,187 + EFB2_00674 0.58 +1.1 681,187 + EFB2_00674 0.58 -2.9 681,188 - 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EFB2_00676 0.21 -1.4 682,228 - EFB2_00676 0.21 -0.4 682,228 - EFB2_00676 0.21 -0.8 682,228 - EFB2_00676 0.21 +0.3 682,228 - EFB2_00676 0.21 +0.5 682,228 - EFB2_00676 0.21 +0.1 682,228 - EFB2_00676 0.21 -0.1 682,228 - EFB2_00676 0.21 -1.8 682,228 - EFB2_00676 0.21 -0.4 682,253 - EFB2_00676 0.22 +0.2 682,253 - EFB2_00676 0.22 +1.0 682,337 - EFB2_00676 0.26 -0.1 682,337 - EFB2_00676 0.26 -0.1 682,388 + EFB2_00676 0.29 +1.5 682,389 - EFB2_00676 0.29 -0.7
Or see this region's nucleotide sequence