Strain Fitness in Escherichia fergusonii Becca around EFB2_00183

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_00182 and EFB2_00183 overlap by 8 nucleotidesEFB2_00183 and EFB2_00184 are separated by 15 nucleotides EFB2_00182: EFB2_00182 - Lipopolysaccharide core biosynthesis protein RfaG, at 171,484 to 172,608 _00182 EFB2_00183: EFB2_00183 - Lipopolysaccharide core heptose(I) kinase RfaP, at 172,601 to 173,398 _00183 EFB2_00184: EFB2_00184 - hypothetical protein, at 173,414 to 174,430 _00184 Position (kb) 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 171.710 kb on + strand, within EFB2_00182at 171.790 kb on + strand, within EFB2_00182at 171.918 kb on + strand, within EFB2_00182at 172.072 kb on + strand, within EFB2_00182at 172.072 kb on + strand, within EFB2_00182at 172.107 kb on + strand, within EFB2_00182at 172.172 kb on + strand, within EFB2_00182at 172.175 kb on + strand, within EFB2_00182at 172.175 kb on + strand, within EFB2_00182at 172.175 kb on + strand, within EFB2_00182at 172.176 kb on - strand, within EFB2_00182at 172.176 kb on - strand, within EFB2_00182at 172.177 kb on + strand, within EFB2_00182at 172.177 kb on + strand, within EFB2_00182at 172.177 kb on + strand, within EFB2_00182at 172.405 kb on + strand, within EFB2_00182at 172.407 kb on + strand, within EFB2_00182at 172.542 kb on + strandat 172.542 kb on + strandat 172.542 kb on + strandat 172.542 kb on + strandat 172.542 kb on + strandat 172.553 kb on + strandat 172.553 kb on + strandat 172.553 kb on + strandat 172.555 kb on + strandat 172.555 kb on + strandat 172.555 kb on + strandat 172.555 kb on + strandat 172.555 kb on + strandat 172.586 kb on + strandat 172.873 kb on + strand, within EFB2_00183at 172.873 kb on + strand, within EFB2_00183at 172.877 kb on + strand, within EFB2_00183at 172.877 kb on + strand, within EFB2_00183at 173.020 kb on + strand, within EFB2_00183at 173.396 kb on + strandat 173.413 kb on + strandat 173.413 kb on + strandat 173.413 kb on + strandat 173.426 kb on + strandat 173.431 kb on + strandat 173.452 kb on + strandat 173.453 kb on - strandat 173.453 kb on - strandat 173.571 kb on + strand, within EFB2_00184at 173.575 kb on + strand, within EFB2_00184at 173.575 kb on + strand, within EFB2_00184at 173.575 kb on + strand, within EFB2_00184at 173.575 kb on + strand, within EFB2_00184at 173.576 kb on - strand, within EFB2_00184at 173.617 kb on + strand, within EFB2_00184at 173.618 kb on - strand, within EFB2_00184at 173.663 kb on + strand, within EFB2_00184at 173.663 kb on + strand, within EFB2_00184at 173.664 kb on - strand, within EFB2_00184at 173.664 kb on - strand, within EFB2_00184at 173.664 kb on - strand, within EFB2_00184at 173.664 kb on - strand, within EFB2_00184at 173.664 kb on - strand, within EFB2_00184at 173.668 kb on + strand, within EFB2_00184at 173.668 kb on + strand, within EFB2_00184at 173.668 kb on + strand, within EFB2_00184at 173.668 kb on + strand, within EFB2_00184at 173.668 kb on + strand, within EFB2_00184at 173.668 kb on + strand, within EFB2_00184at 173.668 kb on + strand, within EFB2_00184at 173.668 kb on + strand, within EFB2_00184at 173.669 kb on - strand, within EFB2_00184at 173.669 kb on - strand, within EFB2_00184at 173.669 kb on - strand, within EFB2_00184at 173.675 kb on - strand, within EFB2_00184at 173.737 kb on + strand, within EFB2_00184at 173.737 kb on + strand, within EFB2_00184at 173.737 kb on + strand, within EFB2_00184at 173.747 kb on + strand, within EFB2_00184at 173.747 kb on + strand, within EFB2_00184at 173.792 kb on - strand, within EFB2_00184at 173.836 kb on - strand, within EFB2_00184at 173.866 kb on + strand, within EFB2_00184at 173.867 kb on - strand, within EFB2_00184at 173.900 kb on - strand, within EFB2_00184at 173.935 kb on + strand, within EFB2_00184at 173.935 kb on + strand, within EFB2_00184at 173.936 kb on - strand, within EFB2_00184at 173.936 kb on - strand, within EFB2_00184at 173.936 kb on - strand, within EFB2_00184at 173.959 kb on + strand, within EFB2_00184at 173.983 kb on + strand, within EFB2_00184at 173.984 kb on - strand, within EFB2_00184at 173.989 kb on - strand, within EFB2_00184at 174.016 kb on + strand, within EFB2_00184at 174.068 kb on - strand, within EFB2_00184at 174.079 kb on + strand, within EFB2_00184at 174.085 kb on + strand, within EFB2_00184at 174.185 kb on - strand, within EFB2_00184at 174.322 kb on + strand, within EFB2_00184

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Per-strain Table

Position Strand Gene LocusTag Fraction phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
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171,710 + EFB2_00182 0.20 -0.2
171,790 + EFB2_00182 0.27 -0.7
171,918 + EFB2_00182 0.39 -0.4
172,072 + EFB2_00182 0.52 +0.2
172,072 + EFB2_00182 0.52 +0.2
172,107 + EFB2_00182 0.55 -1.0
172,172 + EFB2_00182 0.61 -1.2
172,175 + EFB2_00182 0.61 -1.0
172,175 + EFB2_00182 0.61 -0.8
172,175 + EFB2_00182 0.61 -0.2
172,176 - EFB2_00182 0.62 +0.6
172,176 - EFB2_00182 0.62 -0.7
172,177 + EFB2_00182 0.62 -0.7
172,177 + EFB2_00182 0.62 +0.6
172,177 + EFB2_00182 0.62 +0.2
172,405 + EFB2_00182 0.82 -1.2
172,407 + EFB2_00182 0.82 -1.2
172,542 + +2.2
172,542 + -0.2
172,542 + -2.0
172,542 + -1.4
172,542 + +1.7
172,553 + -1.0
172,553 + -1.8
172,553 + +2.4
172,555 + -0.7
172,555 + -0.7
172,555 + -2.2
172,555 + +0.3
172,555 + +0.6
172,586 + -1.3
172,873 + EFB2_00183 0.34 -0.7
172,873 + EFB2_00183 0.34 -0.8
172,877 + EFB2_00183 0.35 +2.2
172,877 + EFB2_00183 0.35 +2.2
173,020 + EFB2_00183 0.53 -0.6
173,396 + +0.8
173,413 + -0.2
173,413 + -0.4
173,413 + -0.4
173,426 + -0.6
173,431 + +0.6
173,452 + +1.2
173,453 - -0.3
173,453 - -1.6
173,571 + EFB2_00184 0.15 -0.6
173,575 + EFB2_00184 0.16 -0.6
173,575 + EFB2_00184 0.16 -0.4
173,575 + EFB2_00184 0.16 -0.9
173,575 + EFB2_00184 0.16 -1.2
173,576 - EFB2_00184 0.16 -0.6
173,617 + EFB2_00184 0.20 +0.9
173,618 - EFB2_00184 0.20 -0.4
173,663 + EFB2_00184 0.24 -3.6
173,663 + EFB2_00184 0.24 -2.8
173,664 - EFB2_00184 0.25 -1.2
173,664 - EFB2_00184 0.25 -1.3
173,664 - EFB2_00184 0.25 -2.4
173,664 - EFB2_00184 0.25 -2.0
173,664 - EFB2_00184 0.25 -1.8
173,668 + EFB2_00184 0.25 -2.5
173,668 + EFB2_00184 0.25 -2.5
173,668 + EFB2_00184 0.25 -2.2
173,668 + EFB2_00184 0.25 -0.1
173,668 + EFB2_00184 0.25 +0.5
173,668 + EFB2_00184 0.25 +1.6
173,668 + EFB2_00184 0.25 -1.3
173,668 + EFB2_00184 0.25 +0.2
173,669 - EFB2_00184 0.25 -1.1
173,669 - EFB2_00184 0.25 -0.4
173,669 - EFB2_00184 0.25 -1.9
173,675 - EFB2_00184 0.26 -0.7
173,737 + EFB2_00184 0.32 +0.2
173,737 + EFB2_00184 0.32 -3.1
173,737 + EFB2_00184 0.32 -0.8
173,747 + EFB2_00184 0.33 -0.6
173,747 + EFB2_00184 0.33 -2.4
173,792 - EFB2_00184 0.37 -2.2
173,836 - EFB2_00184 0.41 -0.9
173,866 + EFB2_00184 0.44 -2.1
173,867 - EFB2_00184 0.45 +0.4
173,900 - EFB2_00184 0.48 -0.6
173,935 + EFB2_00184 0.51 -1.5
173,935 + EFB2_00184 0.51 -2.4
173,936 - EFB2_00184 0.51 -1.5
173,936 - EFB2_00184 0.51 +0.2
173,936 - EFB2_00184 0.51 -2.6
173,959 + EFB2_00184 0.54 -0.8
173,983 + EFB2_00184 0.56 -1.5
173,984 - EFB2_00184 0.56 -0.2
173,989 - EFB2_00184 0.57 -1.6
174,016 + EFB2_00184 0.59 -1.4
174,068 - EFB2_00184 0.64 -1.5
174,079 + EFB2_00184 0.65 -1.5
174,085 + EFB2_00184 0.66 -1.4
174,185 - EFB2_00184 0.76 -2.4
174,322 + EFB2_00184 0.89 -0.6

Or see this region's nucleotide sequence