Experiment: RCM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05195 and BACOVA_05194 overlap by 19 nucleotides BACOVA_05194 and BACOVA_05196 are separated by 266 nucleotides BACOVA_05196 and BACOVA_05197 overlap by 14 nucleotides
BACOVA_05195: BACOVA_05195 - hypothetical protein, at 693,821 to 695,008
_05195
BACOVA_05194: BACOVA_05194 - hypothetical protein, at 694,990 to 695,100
_05194
BACOVA_05196: BACOVA_05196 - pantothenate kinase, type III, at 695,367 to 696,155
_05196
BACOVA_05197: BACOVA_05197 - outer membrane protein transport protein, Ompp1/FadL/TodX family, at 696,142 to 697,413
_05197
Position (kb) 695
696
697 Strain fitness (log2 ratio) -2
-1
0
1 at 695.024 kb on - strand, within BACOVA_05194 at 695.039 kb on - strand, within BACOVA_05194 at 695.081 kb on + strand, within BACOVA_05194 at 695.098 kb on + strand at 695.098 kb on + strand at 695.125 kb on - strand at 695.134 kb on - strand at 695.219 kb on + strand at 695.227 kb on + strand at 695.273 kb on - strand at 695.283 kb on + strand at 695.286 kb on + strand at 695.287 kb on - strand at 695.295 kb on - strand at 695.299 kb on - strand at 695.299 kb on - strand at 695.354 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media remove 695,024 - BACOVA_05194 0.31 -0.8 695,039 - BACOVA_05194 0.44 +1.0 695,081 + BACOVA_05194 0.82 +1.3 695,098 + -0.9 695,098 + +0.3 695,125 - -1.4 695,134 - -0.1 695,219 + +0.1 695,227 + -0.7 695,273 - +1.1 695,283 + -0.8 695,286 + -1.4 695,287 - -0.7 695,295 - -0.1 695,299 - -1.9 695,299 - -1.8 695,354 + -0.4
Or see this region's nucleotide sequence