Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04599

Experiment: RCM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04597 and BACOVA_04599 are separated by 53 nucleotidesBACOVA_04599 and BACOVA_04598 overlap by 75 nucleotidesBACOVA_04598 and BACOVA_04600 are separated by 81 nucleotides BACOVA_04597: BACOVA_04597 - arylsulfatase, at 545,456 to 547,354 _04597 BACOVA_04599: BACOVA_04599 - hypothetical protein, at 547,408 to 547,524 _04599 BACOVA_04598: BACOVA_04598 - PAP2 family protein, at 547,450 to 548,139 _04598 BACOVA_04600: BACOVA_04600 - 3-isopropylmalate dehydrogenase, at 548,221 to 549,282 _04600 Position (kb) 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 546.438 kb on + strand, within BACOVA_04597at 546.441 kb on + strand, within BACOVA_04597at 546.441 kb on + strand, within BACOVA_04597at 546.441 kb on + strand, within BACOVA_04597at 546.442 kb on - strand, within BACOVA_04597at 546.455 kb on + strand, within BACOVA_04597at 546.460 kb on + strand, within BACOVA_04597at 546.568 kb on + strand, within BACOVA_04597at 546.568 kb on + strand, within BACOVA_04597at 546.597 kb on - strand, within BACOVA_04597at 546.598 kb on + strand, within BACOVA_04597at 546.599 kb on - strand, within BACOVA_04597at 546.611 kb on + strand, within BACOVA_04597at 546.615 kb on - strand, within BACOVA_04597at 546.640 kb on + strand, within BACOVA_04597at 546.650 kb on + strand, within BACOVA_04597at 546.651 kb on - strand, within BACOVA_04597at 546.744 kb on + strand, within BACOVA_04597at 546.808 kb on - strand, within BACOVA_04597at 546.808 kb on - strand, within BACOVA_04597at 546.808 kb on - strand, within BACOVA_04597at 546.884 kb on + strand, within BACOVA_04597at 546.893 kb on - strand, within BACOVA_04597at 546.921 kb on - strand, within BACOVA_04597at 546.983 kb on + strand, within BACOVA_04597at 547.036 kb on - strand, within BACOVA_04597at 547.051 kb on - strand, within BACOVA_04597at 547.068 kb on + strand, within BACOVA_04597at 547.076 kb on + strand, within BACOVA_04597at 547.076 kb on + strand, within BACOVA_04597at 547.076 kb on + strand, within BACOVA_04597at 547.076 kb on + strand, within BACOVA_04597at 547.076 kb on + strand, within BACOVA_04597at 547.077 kb on - strand, within BACOVA_04597at 547.077 kb on - strand, within BACOVA_04597at 547.077 kb on - strand, within BACOVA_04597at 547.077 kb on - strand, within BACOVA_04597at 547.090 kb on - strand, within BACOVA_04597at 547.119 kb on + strand, within BACOVA_04597at 547.228 kb on + strandat 547.239 kb on + strandat 547.239 kb on + strandat 547.240 kb on - strandat 547.241 kb on + strandat 547.244 kb on - strandat 547.244 kb on - strandat 547.258 kb on + strandat 547.279 kb on + strandat 547.279 kb on + strandat 547.280 kb on - strandat 547.364 kb on + strandat 547.366 kb on + strandat 547.385 kb on - strandat 547.385 kb on - strandat 547.388 kb on - strandat 547.414 kb on + strandat 547.442 kb on - strand, within BACOVA_04599at 547.455 kb on - strandat 547.455 kb on - strandat 547.521 kb on - strandat 547.585 kb on + strand, within BACOVA_04598at 547.585 kb on + strand, within BACOVA_04598at 547.586 kb on - strand, within BACOVA_04598at 547.593 kb on + strand, within BACOVA_04598at 547.596 kb on - strand, within BACOVA_04598at 547.596 kb on - strand, within BACOVA_04598at 547.601 kb on - strand, within BACOVA_04598at 547.601 kb on - strand, within BACOVA_04598at 547.631 kb on + strand, within BACOVA_04598at 547.632 kb on - strand, within BACOVA_04598at 547.635 kb on - strand, within BACOVA_04598at 547.642 kb on + strand, within BACOVA_04598at 547.642 kb on + strand, within BACOVA_04598at 547.643 kb on - strand, within BACOVA_04598at 547.643 kb on - strand, within BACOVA_04598at 547.666 kb on - strand, within BACOVA_04598at 547.751 kb on + strand, within BACOVA_04598at 547.751 kb on + strand, within BACOVA_04598at 547.752 kb on - strand, within BACOVA_04598at 547.757 kb on + strand, within BACOVA_04598at 547.757 kb on + strand, within BACOVA_04598at 547.757 kb on + strand, within BACOVA_04598at 547.760 kb on + strand, within BACOVA_04598at 547.760 kb on + strand, within BACOVA_04598at 547.761 kb on - strand, within BACOVA_04598at 547.761 kb on - strand, within BACOVA_04598at 547.761 kb on - strand, within BACOVA_04598at 547.762 kb on + strand, within BACOVA_04598at 547.762 kb on + strand, within BACOVA_04598at 547.763 kb on - strand, within BACOVA_04598at 547.763 kb on - strand, within BACOVA_04598at 547.769 kb on + strand, within BACOVA_04598at 547.770 kb on - strand, within BACOVA_04598at 547.770 kb on - strand, within BACOVA_04598at 547.827 kb on - strand, within BACOVA_04598at 547.871 kb on + strand, within BACOVA_04598at 547.899 kb on - strand, within BACOVA_04598at 547.917 kb on + strand, within BACOVA_04598at 547.917 kb on + strand, within BACOVA_04598at 547.917 kb on + strand, within BACOVA_04598at 547.917 kb on + strand, within BACOVA_04598at 547.918 kb on - strand, within BACOVA_04598at 547.918 kb on - strand, within BACOVA_04598at 547.918 kb on - strand, within BACOVA_04598at 547.919 kb on + strand, within BACOVA_04598at 547.919 kb on + strand, within BACOVA_04598at 547.920 kb on - strand, within BACOVA_04598at 547.920 kb on - strand, within BACOVA_04598at 547.920 kb on - strand, within BACOVA_04598at 547.920 kb on - strand, within BACOVA_04598at 547.920 kb on - strand, within BACOVA_04598at 547.921 kb on + strand, within BACOVA_04598at 547.922 kb on - strand, within BACOVA_04598at 547.922 kb on - strand, within BACOVA_04598at 547.922 kb on - strand, within BACOVA_04598at 547.922 kb on - strand, within BACOVA_04598at 547.922 kb on - strand, within BACOVA_04598at 547.931 kb on + strand, within BACOVA_04598at 547.931 kb on + strand, within BACOVA_04598at 547.931 kb on + strand, within BACOVA_04598at 547.937 kb on - strand, within BACOVA_04598at 547.937 kb on - strand, within BACOVA_04598at 547.949 kb on - strand, within BACOVA_04598at 547.963 kb on - strand, within BACOVA_04598at 547.963 kb on - strand, within BACOVA_04598at 547.998 kb on + strand, within BACOVA_04598at 547.998 kb on + strand, within BACOVA_04598at 547.999 kb on - strand, within BACOVA_04598at 548.020 kb on + strand, within BACOVA_04598at 548.057 kb on + strand, within BACOVA_04598at 548.076 kb on + strandat 548.077 kb on - strandat 548.077 kb on - strandat 548.080 kb on + strandat 548.080 kb on + strandat 548.080 kb on + strandat 548.081 kb on - strandat 548.084 kb on + strandat 548.090 kb on + strandat 548.090 kb on + strandat 548.097 kb on + strandat 548.099 kb on + strandat 548.099 kb on + strandat 548.114 kb on + strandat 548.114 kb on + strandat 548.115 kb on - strandat 548.128 kb on - strandat 548.138 kb on - strandat 548.138 kb on - strandat 548.150 kb on - strandat 548.235 kb on + strandat 548.238 kb on - strandat 548.238 kb on - strandat 548.278 kb on - strandat 548.307 kb on + strandat 548.311 kb on + strandat 548.311 kb on + strandat 548.312 kb on - strandat 548.368 kb on - strand, within BACOVA_04600at 548.379 kb on - strand, within BACOVA_04600at 548.392 kb on - strand, within BACOVA_04600at 548.392 kb on - strand, within BACOVA_04600at 548.427 kb on + strand, within BACOVA_04600at 548.428 kb on - strand, within BACOVA_04600at 548.464 kb on - strand, within BACOVA_04600at 548.482 kb on - strand, within BACOVA_04600at 548.493 kb on + strand, within BACOVA_04600at 548.494 kb on - strand, within BACOVA_04600

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media
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546,438 + BACOVA_04597 0.52 -1.0
546,441 + BACOVA_04597 0.52 +1.2
546,441 + BACOVA_04597 0.52 +0.5
546,441 + BACOVA_04597 0.52 -2.1
546,442 - BACOVA_04597 0.52 +1.2
546,455 + BACOVA_04597 0.53 +0.1
546,460 + BACOVA_04597 0.53 -1.3
546,568 + BACOVA_04597 0.59 +0.2
546,568 + BACOVA_04597 0.59 -0.7
546,597 - BACOVA_04597 0.60 -0.4
546,598 + BACOVA_04597 0.60 -0.6
546,599 - BACOVA_04597 0.60 -2.0
546,611 + BACOVA_04597 0.61 -1.2
546,615 - BACOVA_04597 0.61 -0.9
546,640 + BACOVA_04597 0.62 -0.9
546,650 + BACOVA_04597 0.63 -1.3
546,651 - BACOVA_04597 0.63 -0.4
546,744 + BACOVA_04597 0.68 -1.8
546,808 - BACOVA_04597 0.71 -0.7
546,808 - BACOVA_04597 0.71 -0.2
546,808 - BACOVA_04597 0.71 +0.5
546,884 + BACOVA_04597 0.75 +0.1
546,893 - BACOVA_04597 0.76 +0.2
546,921 - BACOVA_04597 0.77 -0.3
546,983 + BACOVA_04597 0.80 -0.8
547,036 - BACOVA_04597 0.83 -0.6
547,051 - BACOVA_04597 0.84 -1.9
547,068 + BACOVA_04597 0.85 -2.4
547,076 + BACOVA_04597 0.85 -0.9
547,076 + BACOVA_04597 0.85 -2.0
547,076 + BACOVA_04597 0.85 +0.7
547,076 + BACOVA_04597 0.85 -1.3
547,076 + BACOVA_04597 0.85 -1.1
547,077 - BACOVA_04597 0.85 +0.3
547,077 - BACOVA_04597 0.85 +0.4
547,077 - BACOVA_04597 0.85 -0.8
547,077 - BACOVA_04597 0.85 +0.4
547,090 - BACOVA_04597 0.86 -0.6
547,119 + BACOVA_04597 0.88 -0.8
547,228 + -3.2
547,239 + -0.9
547,239 + -1.4
547,240 - -0.4
547,241 + -1.3
547,244 - -1.4
547,244 - -1.3
547,258 + -0.0
547,279 + -0.9
547,279 + +0.3
547,280 - +1.2
547,364 + +0.3
547,366 + -0.2
547,385 - +0.2
547,385 - -2.4
547,388 - -0.2
547,414 + -0.3
547,442 - BACOVA_04599 0.29 -0.3
547,455 - -0.6
547,455 - -1.7
547,521 - +0.1
547,585 + BACOVA_04598 0.20 +0.6
547,585 + BACOVA_04598 0.20 -0.5
547,586 - BACOVA_04598 0.20 -1.5
547,593 + BACOVA_04598 0.21 -1.5
547,596 - BACOVA_04598 0.21 +0.6
547,596 - BACOVA_04598 0.21 +0.2
547,601 - BACOVA_04598 0.22 -0.7
547,601 - BACOVA_04598 0.22 -1.4
547,631 + BACOVA_04598 0.26 -1.4
547,632 - BACOVA_04598 0.26 +0.6
547,635 - BACOVA_04598 0.27 -0.6
547,642 + BACOVA_04598 0.28 -0.5
547,642 + BACOVA_04598 0.28 -2.3
547,643 - BACOVA_04598 0.28 +0.2
547,643 - BACOVA_04598 0.28 -0.2
547,666 - BACOVA_04598 0.31 -1.6
547,751 + BACOVA_04598 0.44 -1.5
547,751 + BACOVA_04598 0.44 -1.4
547,752 - BACOVA_04598 0.44 -1.3
547,757 + BACOVA_04598 0.44 -2.3
547,757 + BACOVA_04598 0.44 -1.8
547,757 + BACOVA_04598 0.44 +0.8
547,760 + BACOVA_04598 0.45 +0.2
547,760 + BACOVA_04598 0.45 -0.1
547,761 - BACOVA_04598 0.45 -0.3
547,761 - BACOVA_04598 0.45 +0.4
547,761 - BACOVA_04598 0.45 +0.0
547,762 + BACOVA_04598 0.45 -1.2
547,762 + BACOVA_04598 0.45 -0.0
547,763 - BACOVA_04598 0.45 -0.2
547,763 - BACOVA_04598 0.45 -1.7
547,769 + BACOVA_04598 0.46 +0.1
547,770 - BACOVA_04598 0.46 +0.2
547,770 - BACOVA_04598 0.46 +0.9
547,827 - BACOVA_04598 0.55 -0.8
547,871 + BACOVA_04598 0.61 -0.1
547,899 - BACOVA_04598 0.65 -1.5
547,917 + BACOVA_04598 0.68 -1.2
547,917 + BACOVA_04598 0.68 +0.2
547,917 + BACOVA_04598 0.68 -1.0
547,917 + BACOVA_04598 0.68 -1.5
547,918 - BACOVA_04598 0.68 +0.5
547,918 - BACOVA_04598 0.68 +0.4
547,918 - BACOVA_04598 0.68 -2.7
547,919 + BACOVA_04598 0.68 -0.6
547,919 + BACOVA_04598 0.68 -0.3
547,920 - BACOVA_04598 0.68 +0.6
547,920 - BACOVA_04598 0.68 +0.2
547,920 - BACOVA_04598 0.68 -1.6
547,920 - BACOVA_04598 0.68 +0.2
547,920 - BACOVA_04598 0.68 -0.1
547,921 + BACOVA_04598 0.68 -0.4
547,922 - BACOVA_04598 0.68 -0.1
547,922 - BACOVA_04598 0.68 -1.1
547,922 - BACOVA_04598 0.68 +0.4
547,922 - BACOVA_04598 0.68 -0.4
547,922 - BACOVA_04598 0.68 -1.4
547,931 + BACOVA_04598 0.70 +0.1
547,931 + BACOVA_04598 0.70 +0.1
547,931 + BACOVA_04598 0.70 -0.8
547,937 - BACOVA_04598 0.71 -0.1
547,937 - BACOVA_04598 0.71 -0.8
547,949 - BACOVA_04598 0.72 -0.7
547,963 - BACOVA_04598 0.74 -0.5
547,963 - BACOVA_04598 0.74 -1.0
547,998 + BACOVA_04598 0.79 -1.5
547,998 + BACOVA_04598 0.79 -0.2
547,999 - BACOVA_04598 0.80 -0.2
548,020 + BACOVA_04598 0.83 -2.3
548,057 + BACOVA_04598 0.88 +0.5
548,076 + -0.4
548,077 - -1.7
548,077 - +0.7
548,080 + +0.6
548,080 + -0.8
548,080 + -0.8
548,081 - -0.5
548,084 + -0.2
548,090 + -0.6
548,090 + +0.2
548,097 + -2.7
548,099 + -0.6
548,099 + -0.0
548,114 + +0.7
548,114 + +0.2
548,115 - -0.4
548,128 - -0.4
548,138 - +0.0
548,138 - +1.2
548,150 - +1.8
548,235 + +0.2
548,238 - -0.8
548,238 - -0.4
548,278 - -0.7
548,307 + -0.4
548,311 + -3.3
548,311 + -0.8
548,312 - -1.7
548,368 - BACOVA_04600 0.14 -1.2
548,379 - BACOVA_04600 0.15 -0.1
548,392 - BACOVA_04600 0.16 -0.9
548,392 - BACOVA_04600 0.16 -0.5
548,427 + BACOVA_04600 0.19 -0.6
548,428 - BACOVA_04600 0.19 -2.2
548,464 - BACOVA_04600 0.23 +0.8
548,482 - BACOVA_04600 0.25 -0.8
548,493 + BACOVA_04600 0.26 -0.9
548,494 - BACOVA_04600 0.26 -0.3

Or see this region's nucleotide sequence