Experiment: RCM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03653 and BACOVA_03654 are separated by 128 nucleotides BACOVA_03654 and BACOVA_03655 are separated by 142 nucleotides
BACOVA_03653: BACOVA_03653 - outer membrane protein, OMP85 family, at 485,709 to 488,051
_03653
BACOVA_03654: BACOVA_03654 - hypothetical protein, at 488,180 to 489,091
_03654
BACOVA_03655: BACOVA_03655 - ABC transporter, ATP-binding protein, at 489,234 to 491,189
_03655
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1 at 487.279 kb on + strand, within BACOVA_03653 at 487.279 kb on + strand, within BACOVA_03653 at 487.282 kb on - strand, within BACOVA_03653 at 487.282 kb on - strand, within BACOVA_03653 at 487.283 kb on + strand, within BACOVA_03653 at 487.284 kb on - strand, within BACOVA_03653 at 487.322 kb on + strand, within BACOVA_03653 at 487.326 kb on + strand, within BACOVA_03653 at 487.327 kb on - strand, within BACOVA_03653 at 487.467 kb on - strand, within BACOVA_03653 at 487.487 kb on + strand, within BACOVA_03653 at 487.538 kb on + strand, within BACOVA_03653 at 487.659 kb on - strand, within BACOVA_03653 at 487.677 kb on + strand, within BACOVA_03653 at 487.704 kb on + strand, within BACOVA_03653 at 487.744 kb on + strand, within BACOVA_03653 at 487.744 kb on + strand, within BACOVA_03653 at 487.745 kb on - strand, within BACOVA_03653 at 487.911 kb on - strand at 487.911 kb on - strand at 487.986 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.080 kb on + strand at 488.090 kb on + strand at 488.090 kb on + strand at 488.091 kb on - strand at 488.112 kb on + strand at 488.113 kb on - strand at 488.113 kb on - strand at 488.156 kb on + strand at 489.057 kb on + strand at 489.072 kb on - strand at 489.107 kb on + strand at 489.112 kb on + strand at 489.158 kb on - strand at 489.162 kb on + strand at 489.162 kb on + strand at 489.170 kb on + strand at 489.170 kb on + strand at 489.174 kb on + strand at 489.174 kb on + strand at 489.177 kb on + strand at 489.177 kb on + strand at 489.185 kb on - strand at 489.306 kb on - strand at 489.371 kb on - strand at 489.371 kb on - strand at 489.407 kb on - strand at 489.424 kb on + strand at 489.424 kb on + strand at 489.435 kb on + strand, within BACOVA_03655 at 489.436 kb on - strand, within BACOVA_03655 at 489.507 kb on - strand, within BACOVA_03655 at 489.508 kb on + strand, within BACOVA_03655 at 489.509 kb on - strand, within BACOVA_03655 at 489.509 kb on - strand, within BACOVA_03655 at 489.567 kb on + strand, within BACOVA_03655 at 489.582 kb on + strand, within BACOVA_03655 at 489.596 kb on - strand, within BACOVA_03655 at 489.596 kb on - strand, within BACOVA_03655 at 489.713 kb on + strand, within BACOVA_03655 at 489.740 kb on + strand, within BACOVA_03655 at 489.741 kb on - strand, within BACOVA_03655 at 489.741 kb on - strand, within BACOVA_03655 at 489.770 kb on - strand, within BACOVA_03655 at 489.828 kb on - strand, within BACOVA_03655 at 489.854 kb on + strand, within BACOVA_03655 at 489.875 kb on - strand, within BACOVA_03655 at 489.875 kb on - strand, within BACOVA_03655 at 489.910 kb on + strand, within BACOVA_03655 at 489.914 kb on + strand, within BACOVA_03655 at 489.936 kb on + strand, within BACOVA_03655 at 489.954 kb on + strand, within BACOVA_03655 at 489.955 kb on - strand, within BACOVA_03655 at 489.967 kb on - strand, within BACOVA_03655 at 489.979 kb on + strand, within BACOVA_03655 at 490.050 kb on - strand, within BACOVA_03655
Per-strain Table
Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media remove 487,279 + BACOVA_03653 0.67 -1.0 487,279 + BACOVA_03653 0.67 -0.6 487,282 - BACOVA_03653 0.67 -0.8 487,282 - BACOVA_03653 0.67 -0.3 487,283 + BACOVA_03653 0.67 +0.9 487,284 - BACOVA_03653 0.67 -1.2 487,322 + BACOVA_03653 0.69 -1.8 487,326 + BACOVA_03653 0.69 -0.3 487,327 - BACOVA_03653 0.69 -1.2 487,467 - BACOVA_03653 0.75 -0.8 487,487 + BACOVA_03653 0.76 -1.0 487,538 + BACOVA_03653 0.78 -1.0 487,659 - BACOVA_03653 0.83 +0.4 487,677 + BACOVA_03653 0.84 -0.3 487,704 + BACOVA_03653 0.85 -1.2 487,744 + BACOVA_03653 0.87 -2.0 487,744 + BACOVA_03653 0.87 -1.2 487,745 - BACOVA_03653 0.87 -1.5 487,911 - -1.2 487,911 - -0.6 487,986 + -0.4 488,049 + -2.2 488,049 + -0.0 488,049 + -0.8 488,049 + -0.3 488,080 + +0.1 488,090 + -1.0 488,090 + -1.2 488,091 - -0.2 488,112 + -0.1 488,113 - -1.2 488,113 - -2.6 488,156 + -0.5 489,057 + -0.1 489,072 - +0.2 489,107 + +0.5 489,112 + -0.4 489,158 - +0.2 489,162 + -0.8 489,162 + -0.2 489,170 + +1.3 489,170 + -0.5 489,174 + -1.3 489,174 + -0.0 489,177 + -0.3 489,177 + -0.7 489,185 - -0.5 489,306 - +0.9 489,371 - -0.2 489,371 - +0.0 489,407 - +1.3 489,424 + +0.3 489,424 + +0.0 489,435 + BACOVA_03655 0.10 -0.2 489,436 - BACOVA_03655 0.10 -2.5 489,507 - BACOVA_03655 0.14 -1.6 489,508 + BACOVA_03655 0.14 -0.4 489,509 - BACOVA_03655 0.14 -1.0 489,509 - BACOVA_03655 0.14 -0.5 489,567 + BACOVA_03655 0.17 -0.5 489,582 + BACOVA_03655 0.18 +0.2 489,596 - BACOVA_03655 0.19 -0.4 489,596 - BACOVA_03655 0.19 +1.0 489,713 + BACOVA_03655 0.24 -0.4 489,740 + BACOVA_03655 0.26 +0.2 489,741 - BACOVA_03655 0.26 -1.4 489,741 - BACOVA_03655 0.26 -0.7 489,770 - BACOVA_03655 0.27 -2.1 489,828 - BACOVA_03655 0.30 +0.6 489,854 + BACOVA_03655 0.32 -0.4 489,875 - BACOVA_03655 0.33 -1.4 489,875 - BACOVA_03655 0.33 -0.6 489,910 + BACOVA_03655 0.35 +0.0 489,914 + BACOVA_03655 0.35 -0.3 489,936 + BACOVA_03655 0.36 -0.7 489,954 + BACOVA_03655 0.37 -1.1 489,955 - BACOVA_03655 0.37 -0.5 489,967 - BACOVA_03655 0.37 -0.7 489,979 + BACOVA_03655 0.38 -0.1 490,050 - BACOVA_03655 0.42 +0.9
Or see this region's nucleotide sequence