Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00910

Experiment: RCM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00909 and BACOVA_00910 overlap by 13 nucleotidesBACOVA_00910 and BACOVA_00911 are separated by 6 nucleotidesBACOVA_00911 and BACOVA_00912 are separated by 105 nucleotides BACOVA_00909: BACOVA_00909 - kinase, PfkB family, at 43,210 to 44,130 _00909 BACOVA_00910: BACOVA_00910 - sugar isomerase, KpsF/GutQ family, at 44,118 to 44,723 _00910 BACOVA_00911: BACOVA_00911 - TIGR00730 family protein, at 44,730 to 45,263 _00911 BACOVA_00912: BACOVA_00912 - peptidase M16 inactive domain protein, at 45,369 to 46,589 _00912 Position (kb) 44 45Strain fitness (log2 ratio) -2 -1 0 1 2at 43.121 kb on + strandat 43.135 kb on + strandat 43.181 kb on + strandat 43.182 kb on - strandat 43.182 kb on - strandat 43.185 kb on + strandat 43.185 kb on + strandat 43.186 kb on - strandat 43.186 kb on - strandat 43.187 kb on + strandat 43.199 kb on + strandat 43.298 kb on - strandat 43.330 kb on + strand, within BACOVA_00909at 43.352 kb on + strand, within BACOVA_00909at 43.352 kb on + strand, within BACOVA_00909at 43.353 kb on - strand, within BACOVA_00909at 43.404 kb on + strand, within BACOVA_00909at 43.404 kb on + strand, within BACOVA_00909at 43.407 kb on + strand, within BACOVA_00909at 43.408 kb on - strand, within BACOVA_00909at 43.444 kb on - strand, within BACOVA_00909at 43.455 kb on + strand, within BACOVA_00909at 43.468 kb on + strand, within BACOVA_00909at 43.521 kb on + strand, within BACOVA_00909at 43.530 kb on - strand, within BACOVA_00909at 43.540 kb on + strand, within BACOVA_00909at 43.541 kb on - strand, within BACOVA_00909at 43.541 kb on - strand, within BACOVA_00909at 43.541 kb on - strand, within BACOVA_00909at 43.555 kb on - strand, within BACOVA_00909at 43.556 kb on + strand, within BACOVA_00909at 43.556 kb on + strand, within BACOVA_00909at 43.557 kb on - strand, within BACOVA_00909at 43.557 kb on - strand, within BACOVA_00909at 43.560 kb on + strand, within BACOVA_00909at 43.560 kb on + strand, within BACOVA_00909at 43.560 kb on + strand, within BACOVA_00909at 43.561 kb on - strand, within BACOVA_00909at 43.561 kb on - strand, within BACOVA_00909at 43.561 kb on - strand, within BACOVA_00909at 43.562 kb on + strand, within BACOVA_00909at 43.562 kb on + strand, within BACOVA_00909at 43.562 kb on + strand, within BACOVA_00909at 43.679 kb on + strand, within BACOVA_00909at 43.680 kb on - strand, within BACOVA_00909at 43.680 kb on - strand, within BACOVA_00909at 43.680 kb on - strand, within BACOVA_00909at 43.711 kb on + strand, within BACOVA_00909at 43.712 kb on - strand, within BACOVA_00909at 43.757 kb on + strand, within BACOVA_00909at 43.758 kb on - strand, within BACOVA_00909at 43.758 kb on - strand, within BACOVA_00909at 43.836 kb on - strand, within BACOVA_00909at 43.844 kb on + strand, within BACOVA_00909at 43.883 kb on - strand, within BACOVA_00909at 43.907 kb on - strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.912 kb on + strand, within BACOVA_00909at 43.913 kb on - strand, within BACOVA_00909at 43.929 kb on + strand, within BACOVA_00909at 43.960 kb on - strand, within BACOVA_00909at 44.006 kb on - strand, within BACOVA_00909at 44.032 kb on - strand, within BACOVA_00909at 44.041 kb on + strandat 44.737 kb on - strandat 44.758 kb on - strandat 44.758 kb on - strandat 44.780 kb on - strandat 44.839 kb on - strand, within BACOVA_00911at 44.839 kb on - strand, within BACOVA_00911at 44.858 kb on - strand, within BACOVA_00911at 44.867 kb on - strand, within BACOVA_00911at 44.914 kb on - strand, within BACOVA_00911at 44.914 kb on - strand, within BACOVA_00911at 44.937 kb on - strand, within BACOVA_00911at 45.031 kb on - strand, within BACOVA_00911at 45.031 kb on - strand, within BACOVA_00911at 45.043 kb on - strand, within BACOVA_00911at 45.152 kb on - strand, within BACOVA_00911at 45.190 kb on - strand, within BACOVA_00911at 45.212 kb on - strandat 45.253 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.280 kb on - strandat 45.326 kb on - strandat 45.344 kb on + strandat 45.344 kb on + strandat 45.352 kb on + strandat 45.353 kb on - strandat 45.377 kb on + strandat 45.386 kb on + strandat 45.386 kb on + strandat 45.387 kb on - strandat 45.407 kb on + strandat 45.441 kb on + strandat 45.441 kb on + strandat 45.442 kb on - strandat 45.442 kb on - strandat 45.527 kb on + strand, within BACOVA_00912at 45.557 kb on + strand, within BACOVA_00912at 45.580 kb on + strand, within BACOVA_00912at 45.580 kb on + strand, within BACOVA_00912at 45.600 kb on + strand, within BACOVA_00912at 45.601 kb on - strand, within BACOVA_00912at 45.608 kb on + strand, within BACOVA_00912at 45.645 kb on + strand, within BACOVA_00912at 45.681 kb on - strand, within BACOVA_00912at 45.686 kb on - strand, within BACOVA_00912at 45.686 kb on - strand, within BACOVA_00912at 45.686 kb on - strand, within BACOVA_00912at 45.715 kb on + strand, within BACOVA_00912at 45.716 kb on - strand, within BACOVA_00912

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media
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43,121 + -0.7
43,135 + -0.5
43,181 + +0.1
43,182 - -0.2
43,182 - -0.9
43,185 + +1.6
43,185 + -0.6
43,186 - +0.3
43,186 - +0.0
43,187 + -0.8
43,199 + +0.8
43,298 - -0.7
43,330 + BACOVA_00909 0.13 +0.7
43,352 + BACOVA_00909 0.15 +0.0
43,352 + BACOVA_00909 0.15 -0.4
43,353 - BACOVA_00909 0.16 +0.2
43,404 + BACOVA_00909 0.21 -0.7
43,404 + BACOVA_00909 0.21 +0.4
43,407 + BACOVA_00909 0.21 +0.9
43,408 - BACOVA_00909 0.21 +1.9
43,444 - BACOVA_00909 0.25 -0.2
43,455 + BACOVA_00909 0.27 -0.3
43,468 + BACOVA_00909 0.28 -0.1
43,521 + BACOVA_00909 0.34 +0.7
43,530 - BACOVA_00909 0.35 -0.5
43,540 + BACOVA_00909 0.36 +0.4
43,541 - BACOVA_00909 0.36 +0.3
43,541 - BACOVA_00909 0.36 +0.6
43,541 - BACOVA_00909 0.36 +0.4
43,555 - BACOVA_00909 0.37 -0.4
43,556 + BACOVA_00909 0.38 +0.9
43,556 + BACOVA_00909 0.38 -0.9
43,557 - BACOVA_00909 0.38 +1.1
43,557 - BACOVA_00909 0.38 +0.0
43,560 + BACOVA_00909 0.38 -0.4
43,560 + BACOVA_00909 0.38 +1.1
43,560 + BACOVA_00909 0.38 -1.8
43,561 - BACOVA_00909 0.38 +1.3
43,561 - BACOVA_00909 0.38 -1.0
43,561 - BACOVA_00909 0.38 +1.7
43,562 + BACOVA_00909 0.38 +0.5
43,562 + BACOVA_00909 0.38 +0.4
43,562 + BACOVA_00909 0.38 -0.3
43,679 + BACOVA_00909 0.51 +0.2
43,680 - BACOVA_00909 0.51 -1.0
43,680 - BACOVA_00909 0.51 +0.1
43,680 - BACOVA_00909 0.51 -0.5
43,711 + BACOVA_00909 0.54 -0.4
43,712 - BACOVA_00909 0.55 +0.9
43,757 + BACOVA_00909 0.59 -0.7
43,758 - BACOVA_00909 0.60 +0.4
43,758 - BACOVA_00909 0.60 -1.1
43,836 - BACOVA_00909 0.68 +0.8
43,844 + BACOVA_00909 0.69 +0.1
43,883 - BACOVA_00909 0.73 +0.1
43,907 - BACOVA_00909 0.76 -1.3
43,912 + BACOVA_00909 0.76 +0.2
43,912 + BACOVA_00909 0.76 +0.7
43,912 + BACOVA_00909 0.76 +0.7
43,913 - BACOVA_00909 0.76 +0.5
43,929 + BACOVA_00909 0.78 +0.5
43,960 - BACOVA_00909 0.81 +0.5
44,006 - BACOVA_00909 0.86 +0.1
44,032 - BACOVA_00909 0.89 +1.1
44,041 + -1.8
44,737 - +0.3
44,758 - +0.3
44,758 - -0.2
44,780 - -0.3
44,839 - BACOVA_00911 0.20 -0.4
44,839 - BACOVA_00911 0.20 -0.8
44,858 - BACOVA_00911 0.24 +1.6
44,867 - BACOVA_00911 0.26 -1.1
44,914 - BACOVA_00911 0.34 +0.5
44,914 - BACOVA_00911 0.34 -2.2
44,937 - BACOVA_00911 0.39 -0.3
45,031 - BACOVA_00911 0.56 +0.4
45,031 - BACOVA_00911 0.56 +1.3
45,043 - BACOVA_00911 0.59 +1.7
45,152 - BACOVA_00911 0.79 +0.3
45,190 - BACOVA_00911 0.86 +0.1
45,212 - +1.2
45,253 - -2.0
45,266 - +1.0
45,266 - +0.6
45,280 - -0.8
45,326 - -0.2
45,344 + +0.2
45,344 + -0.5
45,352 + +1.0
45,353 - -0.1
45,377 + +0.1
45,386 + -1.7
45,386 + +0.1
45,387 - +1.2
45,407 + -0.2
45,441 + +0.2
45,441 + -1.5
45,442 - +0.0
45,442 - +1.5
45,527 + BACOVA_00912 0.13 -0.2
45,557 + BACOVA_00912 0.15 +0.3
45,580 + BACOVA_00912 0.17 -0.2
45,580 + BACOVA_00912 0.17 -1.0
45,600 + BACOVA_00912 0.19 -0.4
45,601 - BACOVA_00912 0.19 -0.3
45,608 + BACOVA_00912 0.20 -0.2
45,645 + BACOVA_00912 0.23 -0.8
45,681 - BACOVA_00912 0.26 +0.3
45,686 - BACOVA_00912 0.26 -0.8
45,686 - BACOVA_00912 0.26 -0.6
45,686 - BACOVA_00912 0.26 +1.1
45,715 + BACOVA_00912 0.28 +0.5
45,716 - BACOVA_00912 0.28 -0.6

Or see this region's nucleotide sequence