Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00719

Experiment: RCM 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00714 and BACOVA_00715 are separated by 91 nucleotidesBACOVA_00715 and BACOVA_00716 are separated by 97 nucleotidesBACOVA_00716 and BACOVA_00717 are separated by 29 nucleotidesBACOVA_00717 and BACOVA_00718 are separated by 20 nucleotidesBACOVA_00718 and BACOVA_00719 are separated by 79 nucleotidesBACOVA_00719 and BACOVA_00720 are separated by 171 nucleotides BACOVA_00714: BACOVA_00714 - hypothetical protein, at 390,112 to 390,345 _00714 BACOVA_00715: BACOVA_00715 - hypothetical protein, at 390,437 to 390,544 _00715 BACOVA_00716: BACOVA_00716 - tRNA-Arg, at 390,642 to 390,715 _00716 BACOVA_00717: BACOVA_00717 - tRNA-Arg, at 390,745 to 390,818 _00717 BACOVA_00718: BACOVA_00718 - tRNA-Arg, at 390,839 to 390,912 _00718 BACOVA_00719: BACOVA_00719 - phospholipase, patatin family, at 390,992 to 393,289 _00719 BACOVA_00720: BACOVA_00720 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 393,461 to 395,506 _00720 Position (kb) 390 391 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 390.000 kb on - strandat 390.374 kb on + strandat 390.374 kb on + strandat 390.379 kb on + strandat 390.379 kb on + strandat 390.381 kb on + strandat 390.383 kb on + strandat 390.412 kb on + strandat 390.451 kb on + strand, within BACOVA_00715at 390.460 kb on + strand, within BACOVA_00715at 390.465 kb on - strand, within BACOVA_00715at 390.695 kb on - strand, within BACOVA_00716at 390.695 kb on - strand, within BACOVA_00716at 390.721 kb on + strandat 390.721 kb on + strandat 390.727 kb on - strandat 391.016 kb on + strandat 391.022 kb on + strandat 391.023 kb on - strandat 391.028 kb on + strandat 391.034 kb on + strandat 391.067 kb on - strandat 391.076 kb on + strandat 391.076 kb on + strandat 391.134 kb on + strandat 391.208 kb on - strandat 391.216 kb on - strandat 391.321 kb on + strand, within BACOVA_00719at 391.322 kb on - strand, within BACOVA_00719at 391.325 kb on + strand, within BACOVA_00719at 391.325 kb on + strand, within BACOVA_00719at 391.366 kb on + strand, within BACOVA_00719at 391.367 kb on - strand, within BACOVA_00719at 391.369 kb on - strand, within BACOVA_00719at 391.441 kb on + strand, within BACOVA_00719at 391.441 kb on + strand, within BACOVA_00719at 391.442 kb on - strand, within BACOVA_00719at 391.442 kb on - strand, within BACOVA_00719at 391.446 kb on + strand, within BACOVA_00719at 391.447 kb on - strand, within BACOVA_00719at 391.461 kb on + strand, within BACOVA_00719at 391.461 kb on + strand, within BACOVA_00719at 391.507 kb on + strand, within BACOVA_00719at 391.582 kb on + strand, within BACOVA_00719at 391.583 kb on - strand, within BACOVA_00719at 391.607 kb on - strand, within BACOVA_00719at 391.615 kb on + strand, within BACOVA_00719at 391.724 kb on + strand, within BACOVA_00719at 391.724 kb on + strand, within BACOVA_00719at 391.760 kb on + strand, within BACOVA_00719at 391.872 kb on - strand, within BACOVA_00719at 391.872 kb on - strand, within BACOVA_00719at 391.872 kb on - strand, within BACOVA_00719at 391.936 kb on + strand, within BACOVA_00719at 391.936 kb on + strand, within BACOVA_00719at 391.936 kb on + strand, within BACOVA_00719at 391.937 kb on - strand, within BACOVA_00719at 391.939 kb on - strand, within BACOVA_00719at 391.941 kb on - strand, within BACOVA_00719at 391.983 kb on + strand, within BACOVA_00719at 391.983 kb on + strand, within BACOVA_00719at 392.002 kb on + strand, within BACOVA_00719at 392.002 kb on + strand, within BACOVA_00719at 392.003 kb on - strand, within BACOVA_00719at 392.003 kb on - strand, within BACOVA_00719at 392.003 kb on - strand, within BACOVA_00719at 392.013 kb on + strand, within BACOVA_00719at 392.039 kb on + strand, within BACOVA_00719at 392.040 kb on - strand, within BACOVA_00719at 392.100 kb on + strand, within BACOVA_00719at 392.122 kb on - strand, within BACOVA_00719at 392.122 kb on - strand, within BACOVA_00719at 392.155 kb on + strand, within BACOVA_00719at 392.175 kb on + strand, within BACOVA_00719at 392.176 kb on - strand, within BACOVA_00719at 392.196 kb on + strand, within BACOVA_00719at 392.196 kb on + strand, within BACOVA_00719at 392.197 kb on - strand, within BACOVA_00719at 392.197 kb on - strand, within BACOVA_00719at 392.222 kb on - strand, within BACOVA_00719at 392.239 kb on + strand, within BACOVA_00719at 392.239 kb on + strand, within BACOVA_00719at 392.241 kb on + strand, within BACOVA_00719at 392.241 kb on + strand, within BACOVA_00719at 392.261 kb on - strand, within BACOVA_00719at 392.292 kb on - strand, within BACOVA_00719at 392.292 kb on - strand, within BACOVA_00719at 392.309 kb on - strand, within BACOVA_00719at 392.315 kb on + strand, within BACOVA_00719at 392.316 kb on - strand, within BACOVA_00719at 392.408 kb on + strand, within BACOVA_00719at 392.408 kb on + strand, within BACOVA_00719at 392.409 kb on - strand, within BACOVA_00719at 392.409 kb on - strand, within BACOVA_00719at 392.410 kb on + strand, within BACOVA_00719at 392.410 kb on + strand, within BACOVA_00719at 392.410 kb on + strand, within BACOVA_00719at 392.411 kb on - strand, within BACOVA_00719at 392.417 kb on + strand, within BACOVA_00719at 392.460 kb on + strand, within BACOVA_00719at 392.485 kb on + strand, within BACOVA_00719at 392.580 kb on - strand, within BACOVA_00719at 392.591 kb on + strand, within BACOVA_00719at 392.593 kb on + strand, within BACOVA_00719at 392.593 kb on + strand, within BACOVA_00719at 392.594 kb on - strand, within BACOVA_00719at 392.644 kb on + strand, within BACOVA_00719at 392.645 kb on - strand, within BACOVA_00719at 392.645 kb on - strand, within BACOVA_00719at 392.646 kb on + strand, within BACOVA_00719at 392.646 kb on + strand, within BACOVA_00719at 392.647 kb on - strand, within BACOVA_00719at 392.647 kb on - strand, within BACOVA_00719at 392.647 kb on - strand, within BACOVA_00719at 392.647 kb on - strand, within BACOVA_00719at 392.651 kb on - strand, within BACOVA_00719at 392.651 kb on - strand, within BACOVA_00719at 392.662 kb on - strand, within BACOVA_00719at 392.669 kb on + strand, within BACOVA_00719at 392.679 kb on - strand, within BACOVA_00719at 392.693 kb on - strand, within BACOVA_00719at 392.768 kb on - strand, within BACOVA_00719at 392.772 kb on + strand, within BACOVA_00719at 392.772 kb on + strand, within BACOVA_00719at 392.850 kb on + strand, within BACOVA_00719at 392.850 kb on + strand, within BACOVA_00719at 392.853 kb on - strand, within BACOVA_00719at 392.918 kb on + strand, within BACOVA_00719at 392.994 kb on + strand, within BACOVA_00719at 392.994 kb on + strand, within BACOVA_00719at 392.995 kb on - strand, within BACOVA_00719at 392.996 kb on + strand, within BACOVA_00719at 393.059 kb on + strand, within BACOVA_00719at 393.059 kb on + strand, within BACOVA_00719at 393.059 kb on + strand, within BACOVA_00719at 393.059 kb on + strand, within BACOVA_00719at 393.090 kb on + strandat 393.090 kb on + strandat 393.209 kb on + strandat 393.213 kb on - strandat 393.213 kb on - strandat 393.222 kb on - strandat 393.247 kb on + strandat 393.248 kb on - strandat 393.257 kb on + strandat 393.257 kb on + strandat 393.335 kb on + strandat 393.336 kb on - strandat 393.336 kb on - strandat 393.338 kb on - strandat 393.339 kb on + strandat 393.340 kb on - strandat 393.397 kb on + strandat 393.398 kb on - strandat 393.435 kb on + strandat 393.436 kb on - strandat 393.479 kb on - strandat 393.494 kb on - strandat 393.566 kb on - strandat 393.707 kb on - strand, within BACOVA_00720at 393.786 kb on - strand, within BACOVA_00720at 393.871 kb on + strand, within BACOVA_00720at 393.898 kb on + strand, within BACOVA_00720at 393.899 kb on - strand, within BACOVA_00720at 393.900 kb on + strand, within BACOVA_00720at 393.901 kb on - strand, within BACOVA_00720at 394.132 kb on + strand, within BACOVA_00720at 394.133 kb on - strand, within BACOVA_00720at 394.141 kb on + strand, within BACOVA_00720at 394.146 kb on - strand, within BACOVA_00720at 394.151 kb on + strand, within BACOVA_00720at 394.204 kb on + strand, within BACOVA_00720at 394.205 kb on - strand, within BACOVA_00720at 394.206 kb on + strand, within BACOVA_00720at 394.206 kb on + strand, within BACOVA_00720at 394.207 kb on - strand, within BACOVA_00720at 394.243 kb on - strand, within BACOVA_00720at 394.243 kb on - strand, within BACOVA_00720

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media
remove
390,000 - +0.7
390,374 + +0.2
390,374 + +1.6
390,379 + -0.5
390,379 + -0.5
390,381 + -0.2
390,383 + -0.6
390,412 + -0.4
390,451 + BACOVA_00715 0.13 -0.6
390,460 + BACOVA_00715 0.21 +2.4
390,465 - BACOVA_00715 0.26 -0.2
390,695 - BACOVA_00716 0.72 -0.0
390,695 - BACOVA_00716 0.72 -0.4
390,721 + +0.0
390,721 + +0.6
390,727 - +1.3
391,016 + +0.6
391,022 + -1.0
391,023 - +0.2
391,028 + +0.2
391,034 + +0.1
391,067 - -0.1
391,076 + +0.2
391,076 + -0.4
391,134 + -0.1
391,208 - -0.8
391,216 - -0.3
391,321 + BACOVA_00719 0.14 -0.3
391,322 - BACOVA_00719 0.14 -0.5
391,325 + BACOVA_00719 0.14 +0.8
391,325 + BACOVA_00719 0.14 -0.4
391,366 + BACOVA_00719 0.16 -0.6
391,367 - BACOVA_00719 0.16 +0.9
391,369 - BACOVA_00719 0.16 -0.5
391,441 + BACOVA_00719 0.20 -1.3
391,441 + BACOVA_00719 0.20 -0.7
391,442 - BACOVA_00719 0.20 -1.5
391,442 - BACOVA_00719 0.20 +0.1
391,446 + BACOVA_00719 0.20 +0.6
391,447 - BACOVA_00719 0.20 -1.0
391,461 + BACOVA_00719 0.20 +0.2
391,461 + BACOVA_00719 0.20 -0.2
391,507 + BACOVA_00719 0.22 +0.6
391,582 + BACOVA_00719 0.26 -0.3
391,583 - BACOVA_00719 0.26 -2.9
391,607 - BACOVA_00719 0.27 +1.6
391,615 + BACOVA_00719 0.27 +1.3
391,724 + BACOVA_00719 0.32 +0.3
391,724 + BACOVA_00719 0.32 -0.4
391,760 + BACOVA_00719 0.33 -2.0
391,872 - BACOVA_00719 0.38 +0.3
391,872 - BACOVA_00719 0.38 +0.7
391,872 - BACOVA_00719 0.38 +0.4
391,936 + BACOVA_00719 0.41 -0.7
391,936 + BACOVA_00719 0.41 +0.8
391,936 + BACOVA_00719 0.41 -0.3
391,937 - BACOVA_00719 0.41 -1.2
391,939 - BACOVA_00719 0.41 -2.0
391,941 - BACOVA_00719 0.41 +1.7
391,983 + BACOVA_00719 0.43 -0.5
391,983 + BACOVA_00719 0.43 +0.6
392,002 + BACOVA_00719 0.44 -0.2
392,002 + BACOVA_00719 0.44 +0.2
392,003 - BACOVA_00719 0.44 +1.2
392,003 - BACOVA_00719 0.44 +1.5
392,003 - BACOVA_00719 0.44 +0.0
392,013 + BACOVA_00719 0.44 -0.3
392,039 + BACOVA_00719 0.46 +0.9
392,040 - BACOVA_00719 0.46 -0.4
392,100 + BACOVA_00719 0.48 +0.2
392,122 - BACOVA_00719 0.49 -0.5
392,122 - BACOVA_00719 0.49 -0.2
392,155 + BACOVA_00719 0.51 -0.2
392,175 + BACOVA_00719 0.51 -0.3
392,176 - BACOVA_00719 0.52 +0.1
392,196 + BACOVA_00719 0.52 -0.3
392,196 + BACOVA_00719 0.52 -1.0
392,197 - BACOVA_00719 0.52 +0.1
392,197 - BACOVA_00719 0.52 +0.9
392,222 - BACOVA_00719 0.54 -0.2
392,239 + BACOVA_00719 0.54 -0.8
392,239 + BACOVA_00719 0.54 -0.4
392,241 + BACOVA_00719 0.54 +0.7
392,241 + BACOVA_00719 0.54 +0.2
392,261 - BACOVA_00719 0.55 -0.6
392,292 - BACOVA_00719 0.57 -0.4
392,292 - BACOVA_00719 0.57 +0.4
392,309 - BACOVA_00719 0.57 -0.2
392,315 + BACOVA_00719 0.58 -0.4
392,316 - BACOVA_00719 0.58 -0.6
392,408 + BACOVA_00719 0.62 -1.9
392,408 + BACOVA_00719 0.62 -0.1
392,409 - BACOVA_00719 0.62 +0.5
392,409 - BACOVA_00719 0.62 +0.3
392,410 + BACOVA_00719 0.62 -0.9
392,410 + BACOVA_00719 0.62 +1.8
392,410 + BACOVA_00719 0.62 -0.6
392,411 - BACOVA_00719 0.62 -1.7
392,417 + BACOVA_00719 0.62 -0.4
392,460 + BACOVA_00719 0.64 -1.4
392,485 + BACOVA_00719 0.65 +1.3
392,580 - BACOVA_00719 0.69 +0.4
392,591 + BACOVA_00719 0.70 -0.0
392,593 + BACOVA_00719 0.70 +1.9
392,593 + BACOVA_00719 0.70 +0.2
392,594 - BACOVA_00719 0.70 -1.7
392,644 + BACOVA_00719 0.72 -1.2
392,645 - BACOVA_00719 0.72 +0.0
392,645 - BACOVA_00719 0.72 +0.2
392,646 + BACOVA_00719 0.72 -0.4
392,646 + BACOVA_00719 0.72 -0.7
392,647 - BACOVA_00719 0.72 -0.9
392,647 - BACOVA_00719 0.72 -1.5
392,647 - BACOVA_00719 0.72 -1.3
392,647 - BACOVA_00719 0.72 -1.5
392,651 - BACOVA_00719 0.72 +0.3
392,651 - BACOVA_00719 0.72 +0.6
392,662 - BACOVA_00719 0.73 -1.5
392,669 + BACOVA_00719 0.73 +2.4
392,679 - BACOVA_00719 0.73 -1.6
392,693 - BACOVA_00719 0.74 -0.6
392,768 - BACOVA_00719 0.77 -0.8
392,772 + BACOVA_00719 0.77 -1.0
392,772 + BACOVA_00719 0.77 -1.6
392,850 + BACOVA_00719 0.81 -0.5
392,850 + BACOVA_00719 0.81 -1.5
392,853 - BACOVA_00719 0.81 +1.5
392,918 + BACOVA_00719 0.84 -0.5
392,994 + BACOVA_00719 0.87 -0.1
392,994 + BACOVA_00719 0.87 -1.0
392,995 - BACOVA_00719 0.87 +0.8
392,996 + BACOVA_00719 0.87 -0.0
393,059 + BACOVA_00719 0.90 +0.4
393,059 + BACOVA_00719 0.90 +0.1
393,059 + BACOVA_00719 0.90 -2.1
393,059 + BACOVA_00719 0.90 +0.4
393,090 + +0.6
393,090 + +0.1
393,209 + -0.0
393,213 - -0.1
393,213 - +1.4
393,222 - +0.5
393,247 + +0.4
393,248 - -0.4
393,257 + -0.7
393,257 + +0.8
393,335 + +0.3
393,336 - +0.4
393,336 - -1.4
393,338 - -0.2
393,339 + -1.6
393,340 - +1.1
393,397 + -2.5
393,398 - +0.2
393,435 + -1.0
393,436 - +0.4
393,479 - -0.2
393,494 - +1.1
393,566 - +1.2
393,707 - BACOVA_00720 0.12 +0.8
393,786 - BACOVA_00720 0.16 +1.4
393,871 + BACOVA_00720 0.20 +0.5
393,898 + BACOVA_00720 0.21 -0.2
393,899 - BACOVA_00720 0.21 +0.2
393,900 + BACOVA_00720 0.21 -1.0
393,901 - BACOVA_00720 0.22 +0.2
394,132 + BACOVA_00720 0.33 +0.4
394,133 - BACOVA_00720 0.33 -0.9
394,141 + BACOVA_00720 0.33 +0.4
394,146 - BACOVA_00720 0.33 +1.0
394,151 + BACOVA_00720 0.34 -1.3
394,204 + BACOVA_00720 0.36 -0.7
394,205 - BACOVA_00720 0.36 +0.1
394,206 + BACOVA_00720 0.36 +1.0
394,206 + BACOVA_00720 0.36 -1.7
394,207 - BACOVA_00720 0.36 +1.4
394,243 - BACOVA_00720 0.38 -0.3
394,243 - BACOVA_00720 0.38 -0.6

Or see this region's nucleotide sequence