Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02310

Experiment: mer MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02309 and OHPLBJKB_02310 are separated by 102 nucleotidesOHPLBJKB_02310 and OHPLBJKB_02311 are separated by 81 nucleotidesOHPLBJKB_02311 and OHPLBJKB_02312 overlap by 19 nucleotides OHPLBJKB_02309: OHPLBJKB_02309 - hypothetical protein, at 2,408,204 to 2,414,059 _02309 OHPLBJKB_02310: OHPLBJKB_02310 - hypothetical protein, at 2,414,162 to 2,414,308 _02310 OHPLBJKB_02311: OHPLBJKB_02311 - Carnitine operon protein CaiE, at 2,414,390 to 2,414,980 _02311 OHPLBJKB_02312: OHPLBJKB_02312 - Transcriptional repressor PaaX, at 2,414,962 to 2,415,912 _02312 Position (kb) 2414 2415Strain fitness (log2 ratio) -2 -1 0 1at 2413.382 kb on + strand, within OHPLBJKB_02309at 2413.406 kb on - strand, within OHPLBJKB_02309at 2413.406 kb on - strand, within OHPLBJKB_02309at 2413.406 kb on - strand, within OHPLBJKB_02309at 2413.426 kb on + strand, within OHPLBJKB_02309at 2413.426 kb on + strand, within OHPLBJKB_02309at 2413.426 kb on + strand, within OHPLBJKB_02309at 2413.427 kb on - strand, within OHPLBJKB_02309at 2413.427 kb on - strand, within OHPLBJKB_02309at 2413.427 kb on - strand, within OHPLBJKB_02309at 2413.427 kb on - strand, within OHPLBJKB_02309at 2413.427 kb on - strand, within OHPLBJKB_02309at 2413.427 kb on - strand, within OHPLBJKB_02309at 2413.428 kb on + strand, within OHPLBJKB_02309at 2413.428 kb on + strand, within OHPLBJKB_02309at 2413.532 kb on - strandat 2413.532 kb on - strandat 2413.591 kb on + strandat 2413.621 kb on + strandat 2413.686 kb on - strandat 2413.797 kb on - strandat 2413.979 kb on + strandat 2414.021 kb on + strandat 2414.022 kb on - strandat 2414.022 kb on - strandat 2414.022 kb on - strandat 2414.062 kb on + strandat 2414.082 kb on - strandat 2414.245 kb on - strand, within OHPLBJKB_02310at 2414.483 kb on - strand, within OHPLBJKB_02311at 2414.505 kb on + strand, within OHPLBJKB_02311at 2414.515 kb on + strand, within OHPLBJKB_02311at 2414.516 kb on - strand, within OHPLBJKB_02311at 2414.549 kb on - strand, within OHPLBJKB_02311at 2414.589 kb on + strand, within OHPLBJKB_02311at 2414.593 kb on + strand, within OHPLBJKB_02311at 2414.594 kb on - strand, within OHPLBJKB_02311at 2414.694 kb on - strand, within OHPLBJKB_02311at 2414.734 kb on + strand, within OHPLBJKB_02311at 2414.744 kb on - strand, within OHPLBJKB_02311at 2414.744 kb on - strand, within OHPLBJKB_02311at 2414.801 kb on - strand, within OHPLBJKB_02311at 2414.874 kb on + strand, within OHPLBJKB_02311at 2414.894 kb on - strand, within OHPLBJKB_02311at 2414.963 kb on + strandat 2414.963 kb on + strandat 2414.963 kb on + strandat 2414.964 kb on - strandat 2414.964 kb on - strandat 2415.086 kb on - strand, within OHPLBJKB_02312at 2415.110 kb on + strand, within OHPLBJKB_02312at 2415.120 kb on + strand, within OHPLBJKB_02312at 2415.121 kb on - strand, within OHPLBJKB_02312at 2415.121 kb on - strand, within OHPLBJKB_02312at 2415.121 kb on - strand, within OHPLBJKB_02312at 2415.220 kb on + strand, within OHPLBJKB_02312at 2415.274 kb on + strand, within OHPLBJKB_02312

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI1
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2,413,382 + OHPLBJKB_02309 0.88 -1.7
2,413,406 - OHPLBJKB_02309 0.89 -0.2
2,413,406 - OHPLBJKB_02309 0.89 -0.5
2,413,406 - OHPLBJKB_02309 0.89 +0.4
2,413,426 + OHPLBJKB_02309 0.89 -1.9
2,413,426 + OHPLBJKB_02309 0.89 -1.9
2,413,426 + OHPLBJKB_02309 0.89 +0.9
2,413,427 - OHPLBJKB_02309 0.89 +0.1
2,413,427 - OHPLBJKB_02309 0.89 +1.5
2,413,427 - OHPLBJKB_02309 0.89 +0.0
2,413,427 - OHPLBJKB_02309 0.89 +1.2
2,413,427 - OHPLBJKB_02309 0.89 -0.6
2,413,427 - OHPLBJKB_02309 0.89 -0.3
2,413,428 + OHPLBJKB_02309 0.89 -0.2
2,413,428 + OHPLBJKB_02309 0.89 +0.8
2,413,532 - +0.5
2,413,532 - +1.7
2,413,591 + -0.6
2,413,621 + +0.3
2,413,686 - -0.6
2,413,797 - -1.8
2,413,979 + -0.8
2,414,021 + -0.6
2,414,022 - -0.2
2,414,022 - -1.5
2,414,022 - +0.7
2,414,062 + +0.1
2,414,082 - +0.9
2,414,245 - OHPLBJKB_02310 0.56 -0.9
2,414,483 - OHPLBJKB_02311 0.16 +1.2
2,414,505 + OHPLBJKB_02311 0.19 -0.4
2,414,515 + OHPLBJKB_02311 0.21 -0.7
2,414,516 - OHPLBJKB_02311 0.21 -0.9
2,414,549 - OHPLBJKB_02311 0.27 +0.2
2,414,589 + OHPLBJKB_02311 0.34 -0.6
2,414,593 + OHPLBJKB_02311 0.34 -1.1
2,414,594 - OHPLBJKB_02311 0.35 -1.8
2,414,694 - OHPLBJKB_02311 0.51 -2.6
2,414,734 + OHPLBJKB_02311 0.58 -0.1
2,414,744 - OHPLBJKB_02311 0.60 +1.1
2,414,744 - OHPLBJKB_02311 0.60 -0.5
2,414,801 - OHPLBJKB_02311 0.70 +1.1
2,414,874 + OHPLBJKB_02311 0.82 +1.0
2,414,894 - OHPLBJKB_02311 0.85 -0.2
2,414,963 + -0.8
2,414,963 + -0.0
2,414,963 + -0.7
2,414,964 - +0.1
2,414,964 - -1.6
2,415,086 - OHPLBJKB_02312 0.13 +1.1
2,415,110 + OHPLBJKB_02312 0.16 +1.6
2,415,120 + OHPLBJKB_02312 0.17 +0.2
2,415,121 - OHPLBJKB_02312 0.17 -0.4
2,415,121 - OHPLBJKB_02312 0.17 +1.0
2,415,121 - OHPLBJKB_02312 0.17 +0.9
2,415,220 + OHPLBJKB_02312 0.27 +0.1
2,415,274 + OHPLBJKB_02312 0.33 +0.5

Or see this region's nucleotide sequence