Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01876

Experiment: mer MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01875 and OHPLBJKB_01876 are separated by 22 nucleotidesOHPLBJKB_01876 and OHPLBJKB_01877 are separated by 165 nucleotides OHPLBJKB_01875: OHPLBJKB_01875 - HTH-type transcriptional regulator HexR, at 1,954,128 to 1,954,997 _01875 OHPLBJKB_01876: OHPLBJKB_01876 - hypothetical protein, at 1,955,020 to 1,955,169 _01876 OHPLBJKB_01877: OHPLBJKB_01877 - Glucose-6-phosphate 1-dehydrogenase, at 1,955,335 to 1,956,810 _01877 Position (kb) 1955 1956Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1954.059 kb on + strandat 1954.081 kb on + strandat 1954.100 kb on + strandat 1954.100 kb on + strandat 1954.101 kb on - strandat 1954.101 kb on - strandat 1954.101 kb on - strandat 1954.102 kb on + strandat 1954.103 kb on - strandat 1954.130 kb on - strandat 1954.143 kb on + strandat 1954.148 kb on + strandat 1954.152 kb on + strandat 1954.153 kb on - strandat 1954.153 kb on - strandat 1954.161 kb on - strandat 1954.236 kb on - strand, within OHPLBJKB_01875at 1954.236 kb on - strand, within OHPLBJKB_01875at 1954.236 kb on - strand, within OHPLBJKB_01875at 1954.257 kb on + strand, within OHPLBJKB_01875at 1954.257 kb on + strand, within OHPLBJKB_01875at 1954.257 kb on + strand, within OHPLBJKB_01875at 1954.258 kb on - strand, within OHPLBJKB_01875at 1954.258 kb on - strand, within OHPLBJKB_01875at 1954.295 kb on + strand, within OHPLBJKB_01875at 1954.295 kb on + strand, within OHPLBJKB_01875at 1954.296 kb on - strand, within OHPLBJKB_01875at 1954.297 kb on + strand, within OHPLBJKB_01875at 1954.297 kb on + strand, within OHPLBJKB_01875at 1954.297 kb on + strand, within OHPLBJKB_01875at 1954.297 kb on + strand, within OHPLBJKB_01875at 1954.297 kb on + strand, within OHPLBJKB_01875at 1954.297 kb on + strand, within OHPLBJKB_01875at 1954.297 kb on + strand, within OHPLBJKB_01875at 1954.297 kb on + strand, within OHPLBJKB_01875at 1954.297 kb on + strand, within OHPLBJKB_01875at 1954.298 kb on - strand, within OHPLBJKB_01875at 1954.298 kb on - strand, within OHPLBJKB_01875at 1954.298 kb on - strand, within OHPLBJKB_01875at 1954.298 kb on - strand, within OHPLBJKB_01875at 1954.298 kb on - strand, within OHPLBJKB_01875at 1954.298 kb on - strand, within OHPLBJKB_01875at 1954.298 kb on - strand, within OHPLBJKB_01875at 1954.307 kb on + strand, within OHPLBJKB_01875at 1954.307 kb on + strand, within OHPLBJKB_01875at 1954.487 kb on + strand, within OHPLBJKB_01875at 1954.487 kb on + strand, within OHPLBJKB_01875at 1954.487 kb on + strand, within OHPLBJKB_01875at 1954.538 kb on + strand, within OHPLBJKB_01875at 1954.538 kb on + strand, within OHPLBJKB_01875at 1954.539 kb on - strand, within OHPLBJKB_01875at 1954.553 kb on + strand, within OHPLBJKB_01875at 1954.554 kb on - strand, within OHPLBJKB_01875at 1954.554 kb on - strand, within OHPLBJKB_01875at 1954.554 kb on - strand, within OHPLBJKB_01875at 1954.554 kb on - strand, within OHPLBJKB_01875at 1954.554 kb on - strand, within OHPLBJKB_01875at 1954.554 kb on - strand, within OHPLBJKB_01875at 1954.554 kb on - strand, within OHPLBJKB_01875at 1954.590 kb on + strand, within OHPLBJKB_01875at 1954.655 kb on + strand, within OHPLBJKB_01875at 1954.717 kb on + strand, within OHPLBJKB_01875at 1954.759 kb on + strand, within OHPLBJKB_01875at 1954.889 kb on + strand, within OHPLBJKB_01875at 1954.991 kb on + strandat 1954.992 kb on - strandat 1954.992 kb on - strandat 1955.002 kb on + strandat 1955.002 kb on + strandat 1955.003 kb on - strandat 1955.003 kb on - strandat 1955.070 kb on - strand, within OHPLBJKB_01876at 1955.284 kb on - strandat 1955.289 kb on + strandat 1955.289 kb on + strandat 1955.290 kb on - strandat 1955.301 kb on + strandat 1955.314 kb on - strandat 1955.317 kb on + strandat 1955.317 kb on + strandat 1955.406 kb on + strandat 1955.425 kb on + strandat 1955.506 kb on + strand, within OHPLBJKB_01877at 1955.509 kb on - strand, within OHPLBJKB_01877at 1955.509 kb on - strand, within OHPLBJKB_01877at 1955.676 kb on + strand, within OHPLBJKB_01877at 1955.680 kb on + strand, within OHPLBJKB_01877at 1955.681 kb on - strand, within OHPLBJKB_01877at 1955.681 kb on - strand, within OHPLBJKB_01877at 1955.749 kb on - strand, within OHPLBJKB_01877at 1955.749 kb on - strand, within OHPLBJKB_01877at 1955.830 kb on + strand, within OHPLBJKB_01877at 1955.866 kb on + strand, within OHPLBJKB_01877at 1955.931 kb on + strand, within OHPLBJKB_01877

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI1
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1,954,059 + +4.4
1,954,081 + +1.8
1,954,100 + -0.7
1,954,100 + +1.0
1,954,101 - +0.8
1,954,101 - -0.4
1,954,101 - +1.0
1,954,102 + -1.6
1,954,103 - -1.4
1,954,130 - +1.0
1,954,143 + -2.5
1,954,148 + +0.7
1,954,152 + -1.1
1,954,153 - +0.6
1,954,153 - -0.6
1,954,161 - +0.9
1,954,236 - OHPLBJKB_01875 0.12 -0.7
1,954,236 - OHPLBJKB_01875 0.12 -0.3
1,954,236 - OHPLBJKB_01875 0.12 +0.7
1,954,257 + OHPLBJKB_01875 0.15 +0.2
1,954,257 + OHPLBJKB_01875 0.15 +0.1
1,954,257 + OHPLBJKB_01875 0.15 +0.4
1,954,258 - OHPLBJKB_01875 0.15 -0.1
1,954,258 - OHPLBJKB_01875 0.15 -0.6
1,954,295 + OHPLBJKB_01875 0.19 +0.4
1,954,295 + OHPLBJKB_01875 0.19 -2.6
1,954,296 - OHPLBJKB_01875 0.19 +0.6
1,954,297 + OHPLBJKB_01875 0.19 -0.4
1,954,297 + OHPLBJKB_01875 0.19 -1.3
1,954,297 + OHPLBJKB_01875 0.19 +0.5
1,954,297 + OHPLBJKB_01875 0.19 +1.3
1,954,297 + OHPLBJKB_01875 0.19 -0.1
1,954,297 + OHPLBJKB_01875 0.19 +0.5
1,954,297 + OHPLBJKB_01875 0.19 -0.9
1,954,297 + OHPLBJKB_01875 0.19 -0.1
1,954,297 + OHPLBJKB_01875 0.19 -1.1
1,954,298 - OHPLBJKB_01875 0.20 -0.3
1,954,298 - OHPLBJKB_01875 0.20 +0.0
1,954,298 - OHPLBJKB_01875 0.20 -0.3
1,954,298 - OHPLBJKB_01875 0.20 +0.6
1,954,298 - OHPLBJKB_01875 0.20 -1.1
1,954,298 - OHPLBJKB_01875 0.20 +0.2
1,954,298 - OHPLBJKB_01875 0.20 -0.2
1,954,307 + OHPLBJKB_01875 0.21 -1.6
1,954,307 + OHPLBJKB_01875 0.21 -2.8
1,954,487 + OHPLBJKB_01875 0.41 -0.4
1,954,487 + OHPLBJKB_01875 0.41 -0.5
1,954,487 + OHPLBJKB_01875 0.41 +1.0
1,954,538 + OHPLBJKB_01875 0.47 -0.1
1,954,538 + OHPLBJKB_01875 0.47 +0.1
1,954,539 - OHPLBJKB_01875 0.47 +0.8
1,954,553 + OHPLBJKB_01875 0.49 +0.6
1,954,554 - OHPLBJKB_01875 0.49 +0.9
1,954,554 - OHPLBJKB_01875 0.49 +0.5
1,954,554 - OHPLBJKB_01875 0.49 -0.4
1,954,554 - OHPLBJKB_01875 0.49 +0.5
1,954,554 - OHPLBJKB_01875 0.49 +0.3
1,954,554 - OHPLBJKB_01875 0.49 -0.2
1,954,554 - OHPLBJKB_01875 0.49 -0.4
1,954,590 + OHPLBJKB_01875 0.53 +0.5
1,954,655 + OHPLBJKB_01875 0.61 +0.4
1,954,717 + OHPLBJKB_01875 0.68 +0.0
1,954,759 + OHPLBJKB_01875 0.73 -1.1
1,954,889 + OHPLBJKB_01875 0.87 +0.2
1,954,991 + -0.6
1,954,992 - +0.1
1,954,992 - -0.9
1,955,002 + -0.3
1,955,002 + -0.2
1,955,003 - +1.7
1,955,003 - -1.4
1,955,070 - OHPLBJKB_01876 0.33 +0.9
1,955,284 - -1.0
1,955,289 + +0.5
1,955,289 + +0.7
1,955,290 - +0.4
1,955,301 + -1.9
1,955,314 - -1.0
1,955,317 + +0.1
1,955,317 + +0.7
1,955,406 + -1.4
1,955,425 + -0.0
1,955,506 + OHPLBJKB_01877 0.12 +0.6
1,955,509 - OHPLBJKB_01877 0.12 -1.8
1,955,509 - OHPLBJKB_01877 0.12 -1.3
1,955,676 + OHPLBJKB_01877 0.23 -0.3
1,955,680 + OHPLBJKB_01877 0.23 -0.1
1,955,681 - OHPLBJKB_01877 0.23 +0.6
1,955,681 - OHPLBJKB_01877 0.23 +0.2
1,955,749 - OHPLBJKB_01877 0.28 -0.3
1,955,749 - OHPLBJKB_01877 0.28 -1.3
1,955,830 + OHPLBJKB_01877 0.34 +0.6
1,955,866 + OHPLBJKB_01877 0.36 -0.6
1,955,931 + OHPLBJKB_01877 0.40 +2.2

Or see this region's nucleotide sequence