Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01339

Experiment: mer MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01338 and OHPLBJKB_01339 are separated by 2 nucleotidesOHPLBJKB_01339 and OHPLBJKB_01340 are separated by 12 nucleotidesOHPLBJKB_01340 and OHPLBJKB_01341 are separated by 14 nucleotides OHPLBJKB_01338: OHPLBJKB_01338 - Multiphosphoryl transfer protein 1, at 1,374,739 to 1,377,234 _01338 OHPLBJKB_01339: OHPLBJKB_01339 - HTH-type transcriptional activator RhaR, at 1,377,237 to 1,378,094 _01339 OHPLBJKB_01340: OHPLBJKB_01340 - Transcriptional regulatory protein YpdB, at 1,378,107 to 1,378,841 _01340 OHPLBJKB_01341: OHPLBJKB_01341 - Sensor histidine kinase YpdA, at 1,378,856 to 1,380,553 _01341 Position (kb) 1377 1378 1379Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1376.264 kb on + strand, within OHPLBJKB_01338at 1376.265 kb on - strand, within OHPLBJKB_01338at 1376.305 kb on - strand, within OHPLBJKB_01338at 1376.337 kb on + strand, within OHPLBJKB_01338at 1376.374 kb on + strand, within OHPLBJKB_01338at 1376.374 kb on + strand, within OHPLBJKB_01338at 1376.431 kb on - strand, within OHPLBJKB_01338at 1376.440 kb on + strand, within OHPLBJKB_01338at 1376.441 kb on - strand, within OHPLBJKB_01338at 1376.460 kb on + strand, within OHPLBJKB_01338at 1376.461 kb on - strand, within OHPLBJKB_01338at 1376.463 kb on + strand, within OHPLBJKB_01338at 1376.483 kb on + strand, within OHPLBJKB_01338at 1376.484 kb on - strand, within OHPLBJKB_01338at 1376.485 kb on + strand, within OHPLBJKB_01338at 1376.485 kb on + strand, within OHPLBJKB_01338at 1376.485 kb on + strand, within OHPLBJKB_01338at 1376.485 kb on + strand, within OHPLBJKB_01338at 1376.485 kb on + strand, within OHPLBJKB_01338at 1376.485 kb on + strand, within OHPLBJKB_01338at 1376.485 kb on + strand, within OHPLBJKB_01338at 1376.485 kb on + strand, within OHPLBJKB_01338at 1376.486 kb on - strand, within OHPLBJKB_01338at 1376.486 kb on - strand, within OHPLBJKB_01338at 1376.486 kb on - strand, within OHPLBJKB_01338at 1376.486 kb on - strand, within OHPLBJKB_01338at 1376.486 kb on - strand, within OHPLBJKB_01338at 1376.486 kb on - strand, within OHPLBJKB_01338at 1376.487 kb on + strand, within OHPLBJKB_01338at 1376.488 kb on - strand, within OHPLBJKB_01338at 1376.488 kb on - strand, within OHPLBJKB_01338at 1376.528 kb on + strand, within OHPLBJKB_01338at 1376.529 kb on - strand, within OHPLBJKB_01338at 1376.529 kb on - strand, within OHPLBJKB_01338at 1376.529 kb on - strand, within OHPLBJKB_01338at 1376.533 kb on - strand, within OHPLBJKB_01338at 1376.643 kb on + strand, within OHPLBJKB_01338at 1376.757 kb on - strand, within OHPLBJKB_01338at 1377.153 kb on + strandat 1377.199 kb on - strandat 1377.224 kb on + strandat 1377.225 kb on - strandat 1377.238 kb on + strandat 1377.259 kb on + strandat 1377.259 kb on + strandat 1377.361 kb on + strand, within OHPLBJKB_01339at 1377.361 kb on + strand, within OHPLBJKB_01339at 1377.362 kb on - strand, within OHPLBJKB_01339at 1377.362 kb on - strand, within OHPLBJKB_01339at 1377.362 kb on - strand, within OHPLBJKB_01339at 1377.362 kb on - strand, within OHPLBJKB_01339at 1377.362 kb on - strand, within OHPLBJKB_01339at 1377.409 kb on + strand, within OHPLBJKB_01339at 1377.410 kb on - strand, within OHPLBJKB_01339at 1377.410 kb on - strand, within OHPLBJKB_01339at 1377.416 kb on + strand, within OHPLBJKB_01339at 1377.471 kb on - strand, within OHPLBJKB_01339at 1377.471 kb on - strand, within OHPLBJKB_01339at 1377.514 kb on + strand, within OHPLBJKB_01339at 1377.514 kb on + strand, within OHPLBJKB_01339at 1377.547 kb on + strand, within OHPLBJKB_01339at 1377.587 kb on + strand, within OHPLBJKB_01339at 1377.622 kb on - strand, within OHPLBJKB_01339at 1377.641 kb on + strand, within OHPLBJKB_01339at 1377.665 kb on + strand, within OHPLBJKB_01339at 1377.666 kb on - strand, within OHPLBJKB_01339at 1377.811 kb on - strand, within OHPLBJKB_01339at 1377.811 kb on - strand, within OHPLBJKB_01339at 1377.841 kb on - strand, within OHPLBJKB_01339at 1377.919 kb on + strand, within OHPLBJKB_01339at 1377.919 kb on + strand, within OHPLBJKB_01339at 1377.959 kb on + strand, within OHPLBJKB_01339at 1377.960 kb on - strand, within OHPLBJKB_01339at 1377.960 kb on - strand, within OHPLBJKB_01339at 1377.963 kb on + strand, within OHPLBJKB_01339at 1377.964 kb on - strand, within OHPLBJKB_01339at 1377.964 kb on - strand, within OHPLBJKB_01339at 1377.964 kb on - strand, within OHPLBJKB_01339at 1377.964 kb on - strand, within OHPLBJKB_01339at 1377.964 kb on - strand, within OHPLBJKB_01339at 1378.017 kb on + strandat 1378.017 kb on + strandat 1378.119 kb on + strandat 1378.119 kb on + strandat 1378.192 kb on + strand, within OHPLBJKB_01340at 1378.193 kb on - strand, within OHPLBJKB_01340at 1378.193 kb on - strand, within OHPLBJKB_01340at 1378.200 kb on - strand, within OHPLBJKB_01340at 1378.200 kb on - strand, within OHPLBJKB_01340at 1378.200 kb on - strand, within OHPLBJKB_01340at 1378.202 kb on + strand, within OHPLBJKB_01340at 1378.225 kb on - strand, within OHPLBJKB_01340at 1378.225 kb on - strand, within OHPLBJKB_01340at 1378.317 kb on + strand, within OHPLBJKB_01340at 1378.318 kb on - strand, within OHPLBJKB_01340at 1378.321 kb on + strand, within OHPLBJKB_01340at 1378.322 kb on - strand, within OHPLBJKB_01340at 1378.338 kb on - strand, within OHPLBJKB_01340at 1378.338 kb on - strand, within OHPLBJKB_01340at 1378.375 kb on + strand, within OHPLBJKB_01340at 1378.375 kb on + strand, within OHPLBJKB_01340at 1378.375 kb on + strand, within OHPLBJKB_01340at 1378.376 kb on - strand, within OHPLBJKB_01340at 1378.376 kb on - strand, within OHPLBJKB_01340at 1378.376 kb on - strand, within OHPLBJKB_01340at 1378.376 kb on - strand, within OHPLBJKB_01340at 1378.379 kb on + strand, within OHPLBJKB_01340at 1378.385 kb on + strand, within OHPLBJKB_01340at 1378.402 kb on - strand, within OHPLBJKB_01340at 1378.463 kb on + strand, within OHPLBJKB_01340at 1378.463 kb on + strand, within OHPLBJKB_01340at 1378.520 kb on + strand, within OHPLBJKB_01340at 1378.520 kb on + strand, within OHPLBJKB_01340at 1378.578 kb on + strand, within OHPLBJKB_01340at 1378.676 kb on + strand, within OHPLBJKB_01340at 1378.676 kb on + strand, within OHPLBJKB_01340at 1378.676 kb on + strand, within OHPLBJKB_01340at 1378.677 kb on - strand, within OHPLBJKB_01340at 1378.781 kb on + strandat 1378.782 kb on - strandat 1378.845 kb on - strandat 1378.871 kb on - strandat 1378.871 kb on - strandat 1378.871 kb on - strandat 1378.962 kb on + strandat 1378.967 kb on + strandat 1378.968 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI1
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1,376,264 + OHPLBJKB_01338 0.61 +0.3
1,376,265 - OHPLBJKB_01338 0.61 +0.5
1,376,305 - OHPLBJKB_01338 0.63 -0.2
1,376,337 + OHPLBJKB_01338 0.64 -0.1
1,376,374 + OHPLBJKB_01338 0.66 -2.1
1,376,374 + OHPLBJKB_01338 0.66 -0.8
1,376,431 - OHPLBJKB_01338 0.68 +0.4
1,376,440 + OHPLBJKB_01338 0.68 -0.5
1,376,441 - OHPLBJKB_01338 0.68 +0.0
1,376,460 + OHPLBJKB_01338 0.69 -1.3
1,376,461 - OHPLBJKB_01338 0.69 -0.2
1,376,463 + OHPLBJKB_01338 0.69 -0.2
1,376,483 + OHPLBJKB_01338 0.70 +1.1
1,376,484 - OHPLBJKB_01338 0.70 -0.3
1,376,485 + OHPLBJKB_01338 0.70 +0.2
1,376,485 + OHPLBJKB_01338 0.70 +0.1
1,376,485 + OHPLBJKB_01338 0.70 -0.3
1,376,485 + OHPLBJKB_01338 0.70 -0.5
1,376,485 + OHPLBJKB_01338 0.70 +0.5
1,376,485 + OHPLBJKB_01338 0.70 -1.6
1,376,485 + OHPLBJKB_01338 0.70 +0.2
1,376,485 + OHPLBJKB_01338 0.70 +0.2
1,376,486 - OHPLBJKB_01338 0.70 -0.6
1,376,486 - OHPLBJKB_01338 0.70 +0.4
1,376,486 - OHPLBJKB_01338 0.70 +0.6
1,376,486 - OHPLBJKB_01338 0.70 -0.5
1,376,486 - OHPLBJKB_01338 0.70 -0.2
1,376,486 - OHPLBJKB_01338 0.70 -0.1
1,376,487 + OHPLBJKB_01338 0.70 -0.1
1,376,488 - OHPLBJKB_01338 0.70 +0.5
1,376,488 - OHPLBJKB_01338 0.70 +1.0
1,376,528 + OHPLBJKB_01338 0.72 +1.3
1,376,529 - OHPLBJKB_01338 0.72 +0.0
1,376,529 - OHPLBJKB_01338 0.72 -0.0
1,376,529 - OHPLBJKB_01338 0.72 -0.3
1,376,533 - OHPLBJKB_01338 0.72 +0.3
1,376,643 + OHPLBJKB_01338 0.76 -0.2
1,376,757 - OHPLBJKB_01338 0.81 +0.7
1,377,153 + -1.3
1,377,199 - -0.2
1,377,224 + +0.4
1,377,225 - +0.3
1,377,238 + +0.8
1,377,259 + +0.5
1,377,259 + -0.7
1,377,361 + OHPLBJKB_01339 0.14 -0.3
1,377,361 + OHPLBJKB_01339 0.14 -0.1
1,377,362 - OHPLBJKB_01339 0.15 -0.4
1,377,362 - OHPLBJKB_01339 0.15 +0.6
1,377,362 - OHPLBJKB_01339 0.15 +0.5
1,377,362 - OHPLBJKB_01339 0.15 +0.4
1,377,362 - OHPLBJKB_01339 0.15 -0.2
1,377,409 + OHPLBJKB_01339 0.20 +0.0
1,377,410 - OHPLBJKB_01339 0.20 -0.5
1,377,410 - OHPLBJKB_01339 0.20 +0.8
1,377,416 + OHPLBJKB_01339 0.21 +0.4
1,377,471 - OHPLBJKB_01339 0.27 +0.7
1,377,471 - OHPLBJKB_01339 0.27 +0.4
1,377,514 + OHPLBJKB_01339 0.32 +1.2
1,377,514 + OHPLBJKB_01339 0.32 -1.0
1,377,547 + OHPLBJKB_01339 0.36 -0.6
1,377,587 + OHPLBJKB_01339 0.41 +0.7
1,377,622 - OHPLBJKB_01339 0.45 -0.5
1,377,641 + OHPLBJKB_01339 0.47 +0.4
1,377,665 + OHPLBJKB_01339 0.50 -0.1
1,377,666 - OHPLBJKB_01339 0.50 -0.4
1,377,811 - OHPLBJKB_01339 0.67 -0.6
1,377,811 - OHPLBJKB_01339 0.67 -1.3
1,377,841 - OHPLBJKB_01339 0.70 +0.0
1,377,919 + OHPLBJKB_01339 0.79 +0.9
1,377,919 + OHPLBJKB_01339 0.79 +0.1
1,377,959 + OHPLBJKB_01339 0.84 +1.0
1,377,960 - OHPLBJKB_01339 0.84 -0.4
1,377,960 - OHPLBJKB_01339 0.84 +0.8
1,377,963 + OHPLBJKB_01339 0.85 -0.5
1,377,964 - OHPLBJKB_01339 0.85 -0.3
1,377,964 - OHPLBJKB_01339 0.85 +0.5
1,377,964 - OHPLBJKB_01339 0.85 +1.2
1,377,964 - OHPLBJKB_01339 0.85 +0.2
1,377,964 - OHPLBJKB_01339 0.85 +1.0
1,378,017 + -0.2
1,378,017 + +0.9
1,378,119 + +1.1
1,378,119 + -0.1
1,378,192 + OHPLBJKB_01340 0.12 +0.8
1,378,193 - OHPLBJKB_01340 0.12 +0.6
1,378,193 - OHPLBJKB_01340 0.12 +0.3
1,378,200 - OHPLBJKB_01340 0.13 -0.1
1,378,200 - OHPLBJKB_01340 0.13 +0.7
1,378,200 - OHPLBJKB_01340 0.13 -0.1
1,378,202 + OHPLBJKB_01340 0.13 +1.3
1,378,225 - OHPLBJKB_01340 0.16 -0.3
1,378,225 - OHPLBJKB_01340 0.16 +1.0
1,378,317 + OHPLBJKB_01340 0.29 +1.8
1,378,318 - OHPLBJKB_01340 0.29 +0.5
1,378,321 + OHPLBJKB_01340 0.29 -0.8
1,378,322 - OHPLBJKB_01340 0.29 +0.4
1,378,338 - OHPLBJKB_01340 0.31 +1.0
1,378,338 - OHPLBJKB_01340 0.31 -0.2
1,378,375 + OHPLBJKB_01340 0.36 +0.8
1,378,375 + OHPLBJKB_01340 0.36 +0.3
1,378,375 + OHPLBJKB_01340 0.36 +0.5
1,378,376 - OHPLBJKB_01340 0.37 +0.3
1,378,376 - OHPLBJKB_01340 0.37 +0.8
1,378,376 - OHPLBJKB_01340 0.37 +0.4
1,378,376 - OHPLBJKB_01340 0.37 +0.5
1,378,379 + OHPLBJKB_01340 0.37 +1.0
1,378,385 + OHPLBJKB_01340 0.38 +1.7
1,378,402 - OHPLBJKB_01340 0.40 +0.4
1,378,463 + OHPLBJKB_01340 0.48 +0.1
1,378,463 + OHPLBJKB_01340 0.48 -0.5
1,378,520 + OHPLBJKB_01340 0.56 +0.5
1,378,520 + OHPLBJKB_01340 0.56 -0.2
1,378,578 + OHPLBJKB_01340 0.64 -3.5
1,378,676 + OHPLBJKB_01340 0.77 +1.4
1,378,676 + OHPLBJKB_01340 0.77 -0.6
1,378,676 + OHPLBJKB_01340 0.77 -0.2
1,378,677 - OHPLBJKB_01340 0.78 +0.8
1,378,781 + -1.2
1,378,782 - -0.1
1,378,845 - +1.1
1,378,871 - -1.4
1,378,871 - +0.5
1,378,871 - +0.3
1,378,962 + +0.9
1,378,967 + +0.4
1,378,968 - +1.8

Or see this region's nucleotide sequence