Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00822

Experiment: mer MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00821 and OHPLBJKB_00822 are separated by 24 nucleotidesOHPLBJKB_00822 and OHPLBJKB_00823 are separated by 5 nucleotides OHPLBJKB_00821: OHPLBJKB_00821 - Tyrosine recombinase XerD, at 843,645 to 844,541 _00821 OHPLBJKB_00822: OHPLBJKB_00822 - Thiol:disulfide interchange protein DsbC, at 844,566 to 845,276 _00822 OHPLBJKB_00823: OHPLBJKB_00823 - Single-stranded-DNA-specific exonuclease RecJ, at 845,282 to 847,015 _00823 Position (kb) 844 845 846Strain fitness (log2 ratio) -2 -1 0 1 2at 843.571 kb on + strandat 843.571 kb on + strandat 843.572 kb on - strandat 843.572 kb on - strandat 843.572 kb on - strandat 843.572 kb on - strandat 843.576 kb on + strandat 843.576 kb on + strandat 843.576 kb on + strandat 843.604 kb on + strandat 843.605 kb on - strandat 843.611 kb on + strandat 843.634 kb on - strandat 843.846 kb on - strand, within OHPLBJKB_00821at 843.982 kb on + strand, within OHPLBJKB_00821at 844.006 kb on + strand, within OHPLBJKB_00821at 844.006 kb on + strand, within OHPLBJKB_00821at 844.042 kb on + strand, within OHPLBJKB_00821at 844.042 kb on + strand, within OHPLBJKB_00821at 844.071 kb on + strand, within OHPLBJKB_00821at 844.071 kb on + strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.072 kb on - strand, within OHPLBJKB_00821at 844.121 kb on + strand, within OHPLBJKB_00821at 844.219 kb on - strand, within OHPLBJKB_00821at 844.325 kb on + strand, within OHPLBJKB_00821at 844.326 kb on - strand, within OHPLBJKB_00821at 844.332 kb on + strand, within OHPLBJKB_00821at 844.405 kb on + strand, within OHPLBJKB_00821at 844.445 kb on - strand, within OHPLBJKB_00821at 844.481 kb on + strandat 844.565 kb on + strandat 844.565 kb on + strandat 844.566 kb on - strandat 844.581 kb on - strandat 844.581 kb on - strandat 844.581 kb on - strandat 844.589 kb on + strandat 844.589 kb on + strandat 844.590 kb on - strandat 844.590 kb on - strandat 844.590 kb on - strandat 844.590 kb on - strandat 844.680 kb on - strand, within OHPLBJKB_00822at 844.722 kb on - strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.737 kb on + strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.738 kb on - strand, within OHPLBJKB_00822at 844.755 kb on - strand, within OHPLBJKB_00822at 844.760 kb on + strand, within OHPLBJKB_00822at 844.760 kb on + strand, within OHPLBJKB_00822at 844.760 kb on + strand, within OHPLBJKB_00822at 844.760 kb on + strand, within OHPLBJKB_00822at 844.761 kb on - strand, within OHPLBJKB_00822at 844.761 kb on - strand, within OHPLBJKB_00822at 844.761 kb on - strand, within OHPLBJKB_00822at 844.779 kb on + strand, within OHPLBJKB_00822at 844.779 kb on + strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.780 kb on - strand, within OHPLBJKB_00822at 844.828 kb on + strand, within OHPLBJKB_00822at 844.829 kb on - strand, within OHPLBJKB_00822at 844.868 kb on + strand, within OHPLBJKB_00822at 844.868 kb on + strand, within OHPLBJKB_00822at 844.910 kb on + strand, within OHPLBJKB_00822at 844.911 kb on - strand, within OHPLBJKB_00822at 844.913 kb on + strand, within OHPLBJKB_00822at 844.914 kb on - strand, within OHPLBJKB_00822at 844.914 kb on - strand, within OHPLBJKB_00822at 844.956 kb on + strand, within OHPLBJKB_00822at 844.956 kb on + strand, within OHPLBJKB_00822at 844.956 kb on + strand, within OHPLBJKB_00822at 844.957 kb on - strand, within OHPLBJKB_00822at 844.957 kb on - strand, within OHPLBJKB_00822at 844.983 kb on + strand, within OHPLBJKB_00822at 845.039 kb on + strand, within OHPLBJKB_00822at 845.136 kb on + strand, within OHPLBJKB_00822at 845.136 kb on + strand, within OHPLBJKB_00822at 845.140 kb on + strand, within OHPLBJKB_00822at 845.141 kb on - strand, within OHPLBJKB_00822at 845.141 kb on - strand, within OHPLBJKB_00822at 845.271 kb on - strandat 845.274 kb on + strandat 845.275 kb on - strandat 845.295 kb on + strandat 845.295 kb on + strandat 845.295 kb on + strandat 845.295 kb on + strandat 845.296 kb on - strandat 845.369 kb on + strandat 845.422 kb on + strandat 845.422 kb on + strandat 845.422 kb on + strandat 845.422 kb on + strandat 845.423 kb on - strandat 845.423 kb on - strandat 845.423 kb on - strandat 845.423 kb on - strandat 845.423 kb on - strandat 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.474 kb on + strand, within OHPLBJKB_00823at 845.475 kb on - strand, within OHPLBJKB_00823at 845.475 kb on - strand, within OHPLBJKB_00823at 845.475 kb on - strand, within OHPLBJKB_00823at 845.595 kb on - strand, within OHPLBJKB_00823at 845.676 kb on + strand, within OHPLBJKB_00823at 845.676 kb on + strand, within OHPLBJKB_00823at 845.676 kb on + strand, within OHPLBJKB_00823at 845.677 kb on - strand, within OHPLBJKB_00823at 845.699 kb on - strand, within OHPLBJKB_00823at 845.699 kb on - strand, within OHPLBJKB_00823at 845.828 kb on - strand, within OHPLBJKB_00823at 845.870 kb on + strand, within OHPLBJKB_00823at 845.871 kb on - strand, within OHPLBJKB_00823at 845.941 kb on + strand, within OHPLBJKB_00823at 846.073 kb on + strand, within OHPLBJKB_00823at 846.073 kb on + strand, within OHPLBJKB_00823at 846.130 kb on - strand, within OHPLBJKB_00823at 846.178 kb on + strand, within OHPLBJKB_00823at 846.178 kb on + strand, within OHPLBJKB_00823at 846.179 kb on - strand, within OHPLBJKB_00823at 846.179 kb on - strand, within OHPLBJKB_00823at 846.179 kb on - strand, within OHPLBJKB_00823at 846.179 kb on - strand, within OHPLBJKB_00823at 846.179 kb on - strand, within OHPLBJKB_00823at 846.179 kb on - strand, within OHPLBJKB_00823

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI1
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843,571 + -1.5
843,571 + -0.0
843,572 - +1.0
843,572 - +0.3
843,572 - -0.1
843,572 - +0.7
843,576 + -0.3
843,576 + +0.4
843,576 + +0.1
843,604 + +0.9
843,605 - -0.1
843,611 + -0.3
843,634 - -0.3
843,846 - OHPLBJKB_00821 0.22 -1.3
843,982 + OHPLBJKB_00821 0.38 -1.0
844,006 + OHPLBJKB_00821 0.40 -1.0
844,006 + OHPLBJKB_00821 0.40 -0.2
844,042 + OHPLBJKB_00821 0.44 -0.7
844,042 + OHPLBJKB_00821 0.44 -0.6
844,071 + OHPLBJKB_00821 0.47 +0.8
844,071 + OHPLBJKB_00821 0.47 -1.2
844,072 - OHPLBJKB_00821 0.48 -1.0
844,072 - OHPLBJKB_00821 0.48 -1.5
844,072 - OHPLBJKB_00821 0.48 -1.0
844,072 - OHPLBJKB_00821 0.48 -0.3
844,121 + OHPLBJKB_00821 0.53 -0.3
844,219 - OHPLBJKB_00821 0.64 -0.3
844,325 + OHPLBJKB_00821 0.76 -0.5
844,326 - OHPLBJKB_00821 0.76 -0.5
844,332 + OHPLBJKB_00821 0.77 -0.0
844,405 + OHPLBJKB_00821 0.85 -1.0
844,445 - OHPLBJKB_00821 0.89 -0.3
844,481 + -1.0
844,565 + -0.3
844,565 + +0.6
844,566 - +0.1
844,581 - +1.1
844,581 - +1.0
844,581 - +1.0
844,589 + +0.3
844,589 + +0.6
844,590 - +0.6
844,590 - +0.2
844,590 - +0.7
844,590 - +1.1
844,680 - OHPLBJKB_00822 0.16 +1.3
844,722 - OHPLBJKB_00822 0.22 +1.2
844,737 + OHPLBJKB_00822 0.24 +1.0
844,737 + OHPLBJKB_00822 0.24 -0.2
844,737 + OHPLBJKB_00822 0.24 +1.1
844,737 + OHPLBJKB_00822 0.24 +1.6
844,737 + OHPLBJKB_00822 0.24 +1.2
844,737 + OHPLBJKB_00822 0.24 +0.9
844,737 + OHPLBJKB_00822 0.24 +0.9
844,737 + OHPLBJKB_00822 0.24 +2.4
844,738 - OHPLBJKB_00822 0.24 +1.0
844,738 - OHPLBJKB_00822 0.24 +0.5
844,738 - OHPLBJKB_00822 0.24 +1.6
844,738 - OHPLBJKB_00822 0.24 +1.9
844,738 - OHPLBJKB_00822 0.24 +1.4
844,738 - OHPLBJKB_00822 0.24 +0.6
844,738 - OHPLBJKB_00822 0.24 +0.2
844,738 - OHPLBJKB_00822 0.24 +0.3
844,755 - OHPLBJKB_00822 0.27 -0.4
844,760 + OHPLBJKB_00822 0.27 +1.0
844,760 + OHPLBJKB_00822 0.27 +0.6
844,760 + OHPLBJKB_00822 0.27 +0.9
844,760 + OHPLBJKB_00822 0.27 +1.6
844,761 - OHPLBJKB_00822 0.27 +0.9
844,761 - OHPLBJKB_00822 0.27 +0.7
844,761 - OHPLBJKB_00822 0.27 +0.7
844,779 + OHPLBJKB_00822 0.30 +1.3
844,779 + OHPLBJKB_00822 0.30 -0.1
844,780 - OHPLBJKB_00822 0.30 +1.0
844,780 - OHPLBJKB_00822 0.30 +0.7
844,780 - OHPLBJKB_00822 0.30 +1.0
844,780 - OHPLBJKB_00822 0.30 +1.0
844,780 - OHPLBJKB_00822 0.30 +1.2
844,828 + OHPLBJKB_00822 0.37 +2.0
844,829 - OHPLBJKB_00822 0.37 +1.6
844,868 + OHPLBJKB_00822 0.42 +1.9
844,868 + OHPLBJKB_00822 0.42 +1.1
844,910 + OHPLBJKB_00822 0.48 +1.1
844,911 - OHPLBJKB_00822 0.49 +0.8
844,913 + OHPLBJKB_00822 0.49 +1.6
844,914 - OHPLBJKB_00822 0.49 +0.5
844,914 - OHPLBJKB_00822 0.49 +0.8
844,956 + OHPLBJKB_00822 0.55 +0.3
844,956 + OHPLBJKB_00822 0.55 +2.0
844,956 + OHPLBJKB_00822 0.55 +2.7
844,957 - OHPLBJKB_00822 0.55 +1.3
844,957 - OHPLBJKB_00822 0.55 +1.7
844,983 + OHPLBJKB_00822 0.59 +1.3
845,039 + OHPLBJKB_00822 0.67 +0.4
845,136 + OHPLBJKB_00822 0.80 +1.2
845,136 + OHPLBJKB_00822 0.80 +0.8
845,140 + OHPLBJKB_00822 0.81 +0.8
845,141 - OHPLBJKB_00822 0.81 +0.6
845,141 - OHPLBJKB_00822 0.81 +0.4
845,271 - -0.6
845,274 + +1.6
845,275 - +1.3
845,295 + -1.1
845,295 + +0.4
845,295 + -0.4
845,295 + +1.7
845,296 - -1.4
845,369 + +0.1
845,422 + +0.2
845,422 + -1.3
845,422 + +0.3
845,422 + +0.3
845,423 - -2.0
845,423 - -0.5
845,423 - -1.8
845,423 - -0.3
845,423 - -1.1
845,474 + OHPLBJKB_00823 0.11 +0.4
845,474 + OHPLBJKB_00823 0.11 -0.1
845,474 + OHPLBJKB_00823 0.11 +1.3
845,474 + OHPLBJKB_00823 0.11 -0.5
845,474 + OHPLBJKB_00823 0.11 +0.1
845,474 + OHPLBJKB_00823 0.11 +1.3
845,475 - OHPLBJKB_00823 0.11 -0.1
845,475 - OHPLBJKB_00823 0.11 -0.5
845,475 - OHPLBJKB_00823 0.11 +0.6
845,595 - OHPLBJKB_00823 0.18 +0.4
845,676 + OHPLBJKB_00823 0.23 +0.1
845,676 + OHPLBJKB_00823 0.23 -0.5
845,676 + OHPLBJKB_00823 0.23 -1.1
845,677 - OHPLBJKB_00823 0.23 +0.1
845,699 - OHPLBJKB_00823 0.24 -0.6
845,699 - OHPLBJKB_00823 0.24 -0.8
845,828 - OHPLBJKB_00823 0.31 +0.2
845,870 + OHPLBJKB_00823 0.34 -0.0
845,871 - OHPLBJKB_00823 0.34 -0.7
845,941 + OHPLBJKB_00823 0.38 +1.4
846,073 + OHPLBJKB_00823 0.46 +1.3
846,073 + OHPLBJKB_00823 0.46 -0.3
846,130 - OHPLBJKB_00823 0.49 -0.8
846,178 + OHPLBJKB_00823 0.52 +0.6
846,178 + OHPLBJKB_00823 0.52 -0.8
846,179 - OHPLBJKB_00823 0.52 -2.4
846,179 - OHPLBJKB_00823 0.52 -1.0
846,179 - OHPLBJKB_00823 0.52 -0.0
846,179 - OHPLBJKB_00823 0.52 -0.2
846,179 - OHPLBJKB_00823 0.52 -0.7
846,179 - OHPLBJKB_00823 0.52 -0.8

Or see this region's nucleotide sequence