Strain Fitness in Escherichia fergusonii Becca around EFB2_04395

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,614,801	+		EFB2_04394	0.22	+1.2
4,614,877	+		EFB2_04394	0.28	+0.8
4,614,877	+		EFB2_04394	0.28	-1.3
4,614,926	+		EFB2_04394	0.32	-2.2
4,614,926	+		EFB2_04394	0.32	-1.6
4,614,926	+		EFB2_04394	0.32	+0.4
4,614,926	+		EFB2_04394	0.32	+0.9
4,614,926	+		EFB2_04394	0.32	+0.1
4,614,926	+		EFB2_04394	0.32	-0.2
4,614,926	+		EFB2_04394	0.32	-0.1
4,614,926	+		EFB2_04394	0.32	-1.1
4,614,926	+		EFB2_04394	0.32	-0.1
4,614,926	+		EFB2_04394	0.32	-0.5
4,614,926	+		EFB2_04394	0.32	-0.3
4,614,926	+		EFB2_04394	0.32	+0.5
4,614,926	+		EFB2_04394	0.32	-0.1
4,614,926	+		EFB2_04394	0.32	-0.6
4,614,926	+		EFB2_04394	0.32	+0.7
4,614,926	+		EFB2_04394	0.32	+0.3
4,614,927	-		EFB2_04394	0.32	-0.3
4,614,927	-		EFB2_04394	0.32	-0.4
4,614,927	-		EFB2_04394	0.32	+1.5
4,614,927	-		EFB2_04394	0.32	-0.3
4,614,927	-		EFB2_04394	0.32	+0.1
4,614,927	-		EFB2_04394	0.32	-0.7
4,614,927	-		EFB2_04394	0.32	-0.0
4,614,927	-		EFB2_04394	0.32	-0.3
4,614,927	-		EFB2_04394	0.32	-0.3
4,614,927	-		EFB2_04394	0.32	-0.2
4,614,927	-		EFB2_04394	0.32	+0.4
4,614,927	-		EFB2_04394	0.32	+0.9
4,614,927	-		EFB2_04394	0.32	+0.1
4,614,927	-		EFB2_04394	0.32	-0.3
4,614,927	-		EFB2_04394	0.32	+0.6
4,614,927	-		EFB2_04394	0.32	+0.3
4,614,927	-		EFB2_04394	0.32	-0.1
4,614,927	-		EFB2_04394	0.32	+0.6
4,614,927	-		EFB2_04394	0.32	-0.2
4,614,927	-		EFB2_04394	0.32	-0.7
4,614,927	-		EFB2_04394	0.32	-2.2
4,614,927	-		EFB2_04394	0.32	+0.8
4,614,927	-		EFB2_04394	0.32	+0.8
4,614,927	-		EFB2_04394	0.32	+0.4
4,614,927	-		EFB2_04394	0.32	-1.1
4,614,927	-		EFB2_04394	0.32	+0.8
4,614,928	+		EFB2_04394	0.32	+0.0
4,614,928	+		EFB2_04394	0.32	+0.2
4,614,929	-		EFB2_04394	0.32	-1.4
4,614,934	+		EFB2_04394	0.33	+1.3
4,614,958	+		EFB2_04394	0.35	+0.8
4,614,958	+		EFB2_04394	0.35	+1.8
4,614,958	+		EFB2_04394	0.35	+0.5
4,614,958	+		EFB2_04394	0.35	-1.5
4,614,958	+		EFB2_04394	0.35	+1.1
4,614,959	-		EFB2_04394	0.35	-0.0
4,614,959	-		EFB2_04394	0.35	-0.9
4,614,959	-		EFB2_04394	0.35	-0.1
4,614,959	-		EFB2_04394	0.35	+0.6
4,614,963	+		EFB2_04394	0.35	-0.0
4,614,963	+		EFB2_04394	0.35	+0.4
4,614,963	+		EFB2_04394	0.35	+0.1
4,614,963	+		EFB2_04394	0.35	+1.6
4,614,963	+		EFB2_04394	0.35	-2.9
4,614,963	+		EFB2_04394	0.35	-0.9
4,614,964	-		EFB2_04394	0.35	+0.4
4,614,964	-		EFB2_04394	0.35	-1.9
4,614,964	-		EFB2_04394	0.35	+0.4
4,614,964	-		EFB2_04394	0.35	+1.7
4,614,964	-		EFB2_04394	0.35	+0.6
4,614,964	-		EFB2_04394	0.35	+0.2
4,614,973	+		EFB2_04394	0.36	+1.0
4,614,973	+		EFB2_04394	0.36	-1.0
4,614,973	+		EFB2_04394	0.36	+0.6
4,614,973	+		EFB2_04394	0.36	+0.2
4,614,974	-		EFB2_04394	0.36	-0.0
4,614,974	-		EFB2_04394	0.36	-0.1
4,614,974	-		EFB2_04394	0.36	-0.5
4,614,974	-		EFB2_04394	0.36	-0.8
4,614,974	-		EFB2_04394	0.36	-0.8
4,614,974	-		EFB2_04394	0.36	+0.3
4,614,974	-		EFB2_04394	0.36	+0.0
4,614,985	+		EFB2_04394	0.37	+0.9
4,614,985	+		EFB2_04394	0.37	+1.5
4,614,986	-		EFB2_04394	0.37	-0.8
4,615,006	+		EFB2_04394	0.38	+0.1
4,615,006	+		EFB2_04394	0.38	-0.8
4,615,039	+		EFB2_04394	0.41	-0.1
4,615,040	-		EFB2_04394	0.41	+0.0
4,615,072	+		EFB2_04394	0.44	-2.6
4,615,073	-		EFB2_04394	0.44	+0.1
4,615,073	-		EFB2_04394	0.44	+0.2
4,615,092	+		EFB2_04394	0.45	-1.1
4,615,141	+		EFB2_04394	0.49	-2.2
4,615,141	+		EFB2_04394	0.49	-0.1
4,615,141	+		EFB2_04394	0.49	+0.5
4,615,141	+		EFB2_04394	0.49	-0.9
4,615,141	+		EFB2_04394	0.49	+0.6
4,615,141	+		EFB2_04394	0.49	+0.0
4,615,141	+		EFB2_04394	0.49	+0.6
4,615,142	-		EFB2_04394	0.49	-0.1
4,615,142	-		EFB2_04394	0.49	-0.9
4,615,142	-		EFB2_04394	0.49	-0.6
4,615,142	-		EFB2_04394	0.49	+0.2
4,615,142	-		EFB2_04394	0.49	-2.3
4,615,142	-		EFB2_04394	0.49	+0.1
4,615,212	+		EFB2_04394	0.55	+1.2
4,615,212	+		EFB2_04394	0.55	+2.2
4,615,212	+		EFB2_04394	0.55	+1.1
4,615,212	+		EFB2_04394	0.55	+0.7
4,615,212	+		EFB2_04394	0.55	-0.6
4,615,212	+		EFB2_04394	0.55	-2.6
4,615,212	+		EFB2_04394	0.55	-0.8
4,615,212	+		EFB2_04394	0.55	-0.6
4,615,212	+		EFB2_04394	0.55	+0.2
4,615,213	-		EFB2_04394	0.55	+0.7
4,615,213	-		EFB2_04394	0.55	-0.3
4,615,213	-		EFB2_04394	0.55	+1.4
4,615,213	-		EFB2_04394	0.55	+0.5
4,615,217	+		EFB2_04394	0.55	-0.6
4,615,217	+		EFB2_04394	0.55	+0.5
4,615,217	+		EFB2_04394	0.55	+0.2
4,615,217	+		EFB2_04394	0.55	+0.7
4,615,217	+		EFB2_04394	0.55	+1.0
4,615,217	+		EFB2_04394	0.55	-0.2
4,615,218	-		EFB2_04394	0.55	+0.2
4,615,218	-		EFB2_04394	0.55	+0.9
4,615,218	-		EFB2_04394	0.55	-1.4
4,615,228	+		EFB2_04394	0.56	-0.9
4,615,228	+		EFB2_04394	0.56	+0.9
4,615,229	-		EFB2_04394	0.56	-1.0
4,615,233	+		EFB2_04394	0.56	-0.7
4,615,234	-		EFB2_04394	0.56	+0.1
4,615,242	+		EFB2_04394	0.57	-1.4
4,615,242	+		EFB2_04394	0.57	-0.2
4,615,242	+		EFB2_04394	0.57	-0.7
4,615,242	+		EFB2_04394	0.57	-0.0
4,615,243	-		EFB2_04394	0.57	-1.9
4,615,243	-		EFB2_04394	0.57	-1.2
4,615,243	-		EFB2_04394	0.57	+2.2
4,615,243	-		EFB2_04394	0.57	+0.3
4,615,243	-		EFB2_04394	0.57	+1.3
4,615,243	-		EFB2_04394	0.57	+0.3
4,615,256	+		EFB2_04394	0.58	-1.4
4,615,256	+		EFB2_04394	0.58	+0.1
4,615,257	-		EFB2_04394	0.58	+0.8
4,615,257	-		EFB2_04394	0.58	-0.9
4,615,299	+		EFB2_04394	0.62	-1.5
4,615,300	-		EFB2_04394	0.62	-0.4
4,615,317	+		EFB2_04394	0.63	-0.4
4,615,317	+		EFB2_04394	0.63	-0.4
4,615,317	+		EFB2_04394	0.63	+1.3
4,615,317	+		EFB2_04394	0.63	-0.7
4,615,317	+		EFB2_04394	0.63	+0.3
4,615,318	-		EFB2_04394	0.63	+1.1
4,615,318	-		EFB2_04394	0.63	-3.2
4,615,318	-		EFB2_04394	0.63	-0.6
4,615,318	-		EFB2_04394	0.63	-2.2
4,615,341	+		EFB2_04394	0.65	+0.2
4,615,341	+		EFB2_04394	0.65	+0.7
4,615,341	+		EFB2_04394	0.65	-1.1
4,615,341	+		EFB2_04394	0.65	-0.0
4,615,342	-		EFB2_04394	0.65	+0.2
4,615,342	-		EFB2_04394	0.65	-0.9
4,615,342	-		EFB2_04394	0.65	-0.4
4,615,342	-		EFB2_04394	0.65	-0.8
4,615,342	-		EFB2_04394	0.65	-2.4
4,615,342	-		EFB2_04394	0.65	+0.5
4,615,349	+		EFB2_04394	0.66	-2.6
4,615,379	+		EFB2_04394	0.68	+0.6
4,615,379	+		EFB2_04394	0.68	+1.1
4,615,379	+		EFB2_04394	0.68	+0.2
4,615,379	+		EFB2_04394	0.68	+0.4
4,615,379	+		EFB2_04394	0.68	-0.1
4,615,379	+		EFB2_04394	0.68	-0.8
4,615,379	+		EFB2_04394	0.68	+3.1
4,615,379	+		EFB2_04394	0.68	+0.7
4,615,379	+		EFB2_04394	0.68	-2.4
4,615,379	+		EFB2_04394	0.68	+1.3
4,615,379	+		EFB2_04394	0.68	+1.4
4,615,379	+		EFB2_04394	0.68	-0.6
4,615,379	+		EFB2_04394	0.68	+0.6
4,615,379	+		EFB2_04394	0.68	-0.7
4,615,380	-		EFB2_04394	0.68	-0.2
4,615,380	-		EFB2_04394	0.68	+0.3
4,615,380	-		EFB2_04394	0.68	-0.4
4,615,380	-		EFB2_04394	0.68	-0.6
4,615,380	-		EFB2_04394	0.68	-1.7
4,615,380	-		EFB2_04394	0.68	+0.5
4,615,380	-		EFB2_04394	0.68	+3.5
4,615,380	-		EFB2_04394	0.68	-0.6
4,615,380	-		EFB2_04394	0.68	-0.5
4,615,380	-		EFB2_04394	0.68	-1.0
4,615,380	-		EFB2_04394	0.68	+0.1
4,615,380	-		EFB2_04394	0.68	-0.4
4,615,380	-		EFB2_04394	0.68	-1.0
4,615,380	-		EFB2_04394	0.68	+0.2
4,615,380	-		EFB2_04394	0.68	-0.4
4,615,380	-		EFB2_04394	0.68	+0.7
4,615,380	-		EFB2_04394	0.68	+0.1
4,615,381	+		EFB2_04394	0.68	-0.0
4,615,381	+		EFB2_04394	0.68	+0.7
4,615,381	+		EFB2_04394	0.68	+1.1
4,615,381	+		EFB2_04394	0.68	+0.6
4,615,381	+		EFB2_04394	0.68	+1.4
4,615,381	+		EFB2_04394	0.68	-1.1
4,615,382	-		EFB2_04394	0.68	-0.2
4,615,382	-		EFB2_04394	0.68	-1.2
4,615,382	-		EFB2_04394	0.68	-0.3
4,615,382	-		EFB2_04394	0.68	-1.5
4,615,382	-		EFB2_04394	0.68	-0.2
4,615,382	-		EFB2_04394	0.68	-3.7
4,615,383	+		EFB2_04394	0.68	+0.6
4,615,383	+		EFB2_04394	0.68	+1.0
4,615,383	+		EFB2_04394	0.68	+0.6
4,615,383	+		EFB2_04394	0.68	+0.2
4,615,383	+		EFB2_04394	0.68	+0.7
4,615,383	+		EFB2_04394	0.68	-0.7
4,615,383	+		EFB2_04394	0.68	+0.5
4,615,383	+		EFB2_04394	0.68	+1.1
4,615,383	+		EFB2_04394	0.68	-0.3
4,615,383	+		EFB2_04394	0.68	-2.7
4,615,383	+		EFB2_04394	0.68	-1.1
4,615,383	+		EFB2_04394	0.68	+0.9
4,615,383	+		EFB2_04394	0.68	+0.1
4,615,383	+		EFB2_04394	0.68	-0.5
4,615,383	+		EFB2_04394	0.68	+0.6
4,615,383	+		EFB2_04394	0.68	+0.5
4,615,384	-		EFB2_04394	0.68	-2.7
4,615,384	-		EFB2_04394	0.68	+0.5
4,615,384	-		EFB2_04394	0.68	-0.6
4,615,384	-		EFB2_04394	0.68	+1.6
4,615,384	-		EFB2_04394	0.68	+1.3
4,615,384	-		EFB2_04394	0.68	-0.7
4,615,384	-		EFB2_04394	0.68	-0.3
4,615,384	-		EFB2_04394	0.68	+0.7
4,615,384	-		EFB2_04394	0.68	-0.2
4,615,384	-		EFB2_04394	0.68	+0.4
4,615,384	-		EFB2_04394	0.68	-2.4
4,615,384	-		EFB2_04394	0.68	-0.3
4,615,384	-		EFB2_04394	0.68	+0.2
4,615,384	-		EFB2_04394	0.68	+0.0
4,615,384	-		EFB2_04394	0.68	-0.4
4,615,384	-		EFB2_04394	0.68	-0.5
4,615,384	-		EFB2_04394	0.68	-1.9
4,615,385	-		EFB2_04394	0.68	+0.7
4,615,423	+		EFB2_04394	0.72	+1.1
4,615,423	+		EFB2_04394	0.72	+0.1
4,615,423	+		EFB2_04394	0.72	-2.4
4,615,423	+		EFB2_04394	0.72	+0.9
4,615,423	+		EFB2_04394	0.72	-1.2
4,615,423	+		EFB2_04394	0.72	+0.5
4,615,423	+		EFB2_04394	0.72	-1.0
4,615,424	-		EFB2_04394	0.72	-1.2
4,615,424	-		EFB2_04394	0.72	+0.1
4,615,424	-		EFB2_04394	0.72	-0.1
4,615,424	-		EFB2_04394	0.72	-0.2
4,615,424	-		EFB2_04394	0.72	+1.0
4,615,424	-		EFB2_04394	0.72	+1.1
4,615,424	-		EFB2_04394	0.72	-2.7
4,615,424	-		EFB2_04394	0.72	-1.0
4,615,424	-		EFB2_04394	0.72	+0.7
4,615,436	+		EFB2_04394	0.73	-0.1
4,615,437	-		EFB2_04394	0.73	-1.1
4,615,437	-		EFB2_04394	0.73	-1.7
4,615,462	+		EFB2_04394	0.75	-2.4
4,615,463	-		EFB2_04394	0.75	+0.1
4,615,463	-		EFB2_04394	0.75	-0.3
4,615,463	-		EFB2_04394	0.75	+0.4
4,615,463	-		EFB2_04394	0.75	-1.8
4,615,471	+		EFB2_04394	0.75	+1.8
4,615,530	+		EFB2_04394	0.80	-1.8
4,615,530	+		EFB2_04394	0.80	+0.6
4,615,531	-		EFB2_04394	0.80	+0.7
4,615,531	-		EFB2_04394	0.80	+1.7
4,615,531	-		EFB2_04394	0.80	+0.6
4,615,531	-		EFB2_04394	0.80	+0.5
4,615,552	+		EFB2_04394	0.82	+0.3
4,615,552	+		EFB2_04394	0.82	-2.2
4,615,552	+		EFB2_04394	0.82	-0.6
4,615,552	+		EFB2_04394	0.82	+0.1
4,615,552	+		EFB2_04394	0.82	+0.8
4,615,553	-		EFB2_04394	0.82	+0.8
4,615,553	-		EFB2_04394	0.82	+0.3
4,615,553	-		EFB2_04394	0.82	+1.8
4,615,553	-		EFB2_04394	0.82	-0.1
4,615,553	-		EFB2_04394	0.82	-0.5
4,615,553	-		EFB2_04394	0.82	+0.3
4,615,553	-		EFB2_04394	0.82	-0.1
4,615,555	+		EFB2_04394	0.82	+1.2
4,615,555	+		EFB2_04394	0.82	-0.2
4,615,555	+		EFB2_04394	0.82	-0.5
4,615,555	+		EFB2_04394	0.82	+0.6
4,615,555	+		EFB2_04394	0.82	-1.6
4,615,555	+		EFB2_04394	0.82	+0.6
4,615,555	+		EFB2_04394	0.82	-0.0
4,615,555	+		EFB2_04394	0.82	-1.9
4,615,555	+		EFB2_04394	0.82	+0.3
4,615,555	+		EFB2_04394	0.82	-2.3
4,615,555	+		EFB2_04394	0.82	+0.6
4,615,555	+		EFB2_04394	0.82	-2.1
4,615,555	+		EFB2_04394	0.82	-1.0
4,615,556	-		EFB2_04394	0.82	+0.0
4,615,556	-		EFB2_04394	0.82	-0.4
4,615,556	-		EFB2_04394	0.82	-0.7
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