Strain Fitness in Escherichia fergusonii Becca around EFB2_04379

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,602,610	+				+0.5
4,602,610	+				-1.4
4,602,611	-				+0.5
4,602,611	-				-0.2
4,602,643	+				+2.2
4,602,643	+				-0.9
4,602,644	-				-0.8
4,602,644	-				+2.0
4,602,644	-				+0.7
4,602,672	+				-0.9
4,602,682	+				+0.3
4,602,683	-				-0.0
4,602,728	+				-0.6
4,602,728	+				-0.1
4,602,728	+				+2.5
4,602,731	+				-2.7
4,602,731	+				-0.1
4,602,731	+				-1.5
4,602,735	+				-2.0
4,602,736	-				-2.7
4,602,740	+				+0.9
4,602,740	+				+1.1
4,602,740	+				+0.4
4,602,741	-				-1.3
4,602,741	-				-2.3
4,602,761	+				+0.0
4,602,762	-				-0.5
4,602,762	-				+1.8
4,602,762	-				+0.8
4,602,762	-				-0.1
4,602,808	+				+1.2
4,602,808	+				+0.7
4,602,808	+				+0.4
4,602,809	-				-3.4
4,602,809	-				-0.5
4,602,809	-				+0.5
4,602,809	-				+1.0
4,602,820	+				-1.2
4,602,820	+				-3.1
4,602,820	+				+0.0
4,602,820	+				-0.9
4,602,820	+				+0.5
4,602,820	+				+0.5
4,602,820	+				-1.2
4,602,820	+				+0.8
4,602,821	-				-1.9
4,602,821	-				+0.8
4,602,821	-				-2.4
4,602,821	-				-1.6
4,602,821	-				-1.4
4,602,821	-				+0.3
4,602,821	-				-0.7
4,602,821	-				-0.4
4,602,821	-				-0.0
4,602,821	-				-1.0
4,602,822	+				+1.0
4,602,822	+				-0.8
4,602,822	+				+1.1
4,602,822	+				-0.5
4,602,822	+				-0.1
4,602,822	+				-0.7
4,602,822	+				+0.4
4,602,822	+				-0.1
4,602,822	+				-2.5
4,602,822	+				+0.1
4,602,822	+				-0.9
4,602,822	+				+1.7
4,602,822	+				+1.1
4,602,822	+				-1.4
4,602,823	-				-1.3
4,602,823	-				-0.1
4,602,823	-				-1.0
4,602,823	-				+0.2
4,602,823	-				-0.8
4,602,823	-				-0.2
4,602,823	-				-0.6
4,602,823	-				-2.4
4,602,823	-				-1.1
4,602,823	-				-0.4
4,602,830	+				-1.6
4,602,830	+				+0.4
4,602,830	+				+0.2
4,602,830	+				-1.4
4,602,830	+				-0.4
4,602,830	+				-0.1
4,602,830	+				-1.0
4,602,831	-				-1.2
4,602,831	-				-1.1
4,602,831	-				+1.4
4,602,831	-				-2.3
4,602,831	-				-0.3
4,602,831	-				-2.6
4,602,831	-				-0.6
4,602,831	-				-1.5
4,602,834	+				-2.0
4,602,834	+				+0.3
4,602,834	+				-0.6
4,602,834	+				+0.2
4,602,834	+				+2.7
4,602,834	+				+0.5
4,602,834	+				+0.4
4,602,834	+				-3.6
4,602,834	+				+0.1
4,602,834	+				+1.0
4,602,834	+				-0.2
4,602,834	+				+0.5
4,602,834	+				-1.1
4,602,834	+				+2.8
4,602,834	+				-2.3
4,602,834	+				+0.4
4,602,834	+				+0.4
4,602,834	+				+0.5
4,602,834	+				-0.2
4,602,834	+				+1.5
4,602,835	-				-0.1
4,602,835	-				+1.3
4,602,835	-				+0.2
4,602,835	-				-0.7
4,602,835	-				-1.4
4,602,835	-				+0.2
4,602,835	-				+2.4
4,602,835	-				+0.5
4,602,835	-				+2.0
4,602,836	+				-0.4
4,602,836	+				-0.5
4,602,836	+				-1.7
4,602,837	-				-3.1
4,602,837	-				-1.6
4,602,837	-				-0.9
4,602,837	-				-2.6
4,602,837	-				+1.1
4,602,868	+				-1.0
4,602,869	-				-0.9
4,602,869	-				-0.4
4,602,869	-				-0.7
4,602,879	+				+0.3
4,602,879	+				-0.8
4,602,879	+				-2.7
4,602,879	+				+0.5
4,602,879	+				-1.6
4,602,879	+				-0.7
4,602,880	-				-0.6
4,602,880	-				+0.2
4,602,880	-				-0.5
4,602,883	+				+0.4
4,602,883	+				-0.8
4,602,883	+				-0.8
4,602,883	+				+1.2
4,602,884	-				-0.2
4,602,884	-				-0.4
4,602,884	-				+0.3
4,602,884	-				-0.5
4,602,893	+				+1.6
4,602,894	-				-0.4
4,602,894	-				-0.4
4,602,962	+				-1.8
4,602,963	-				-2.2
4,602,963	-				-2.2
4,602,963	-				-3.0
4,602,983	+				+0.7
4,602,983	+				+0.7
4,602,983	+				-0.9
4,602,983	+				-2.6
4,602,983	+				-0.4
4,602,984	-				-0.3
4,602,984	-				+0.8
4,602,984	-				-0.2
4,603,034	+				-0.4
4,603,034	+				+0.6
4,603,035	-				+0.9
4,603,035	-				-0.9
4,603,035	-				-0.3
4,603,046	+				-1.9
4,603,046	+				-0.6
4,603,046	+				-0.5
4,603,046	+				+0.5
4,603,046	+				-1.2
4,603,047	-				+0.0
4,603,047	-				-1.2
4,603,047	-				-1.1
4,603,047	-				+0.1
4,603,047	-				-0.5
4,603,047	-				-0.8
4,603,047	-				-0.7
4,603,047	-				-0.6
4,603,049	-				-0.9
4,603,065	+				+0.5
4,603,137	+		EFB2_04379	0.11	-2.6
4,603,137	+		EFB2_04379	0.11	-0.5
4,603,137	+		EFB2_04379	0.11	-1.3
4,603,137	+		EFB2_04379	0.11	-4.1
4,603,138	-		EFB2_04379	0.11	+0.1
4,603,138	-		EFB2_04379	0.11	+0.0
4,603,138	-		EFB2_04379	0.11	+1.3
4,603,138	-		EFB2_04379	0.11	+0.6
4,603,143	-		EFB2_04379	0.12	+0.7
4,603,143	-		EFB2_04379	0.12	-0.3
4,603,143	-		EFB2_04379	0.12	-3.5
4,603,143	-		EFB2_04379	0.12	+0.7
4,603,183	+		EFB2_04379	0.14	-0.4
4,603,183	+		EFB2_04379	0.14	-0.5
4,603,183	+		EFB2_04379	0.14	-2.7
4,603,184	-		EFB2_04379	0.14	-0.9
4,603,184	-		EFB2_04379	0.14	-1.4
4,603,260	+		EFB2_04379	0.18	-0.4
4,603,260	+		EFB2_04379	0.18	+0.9
4,603,260	+		EFB2_04379	0.18	-2.2
4,603,271	+		EFB2_04379	0.19	-0.0
4,603,271	+		EFB2_04379	0.19	-0.9
4,603,271	+		EFB2_04379	0.19	-0.4
4,603,271	+		EFB2_04379	0.19	-0.0
4,603,271	+		EFB2_04379	0.19	-2.4
4,603,271	+		EFB2_04379	0.19	-2.5
4,603,271	+		EFB2_04379	0.19	+0.4
4,603,271	+		EFB2_04379	0.19	-2.2
4,603,271	+		EFB2_04379	0.19	-0.1
4,603,271	+		EFB2_04379	0.19	-2.0
4,603,271	+		EFB2_04379	0.19	-2.4
4,603,271	+		EFB2_04379	0.19	+0.7
4,603,271	+		EFB2_04379	0.19	-1.2
4,603,271	+		EFB2_04379	0.19	-2.6
4,603,271	+		EFB2_04379	0.19	-1.2
4,603,271	+		EFB2_04379	0.19	-0.5
4,603,272	-		EFB2_04379	0.19	-2.5
4,603,272	-		EFB2_04379	0.19	-0.8
4,603,272	-		EFB2_04379	0.19	-3.0
4,603,272	-		EFB2_04379	0.19	-1.4
4,603,272	-		EFB2_04379	0.19	-1.0
4,603,272	-		EFB2_04379	0.19	-2.9
4,603,272	-		EFB2_04379	0.19	-0.0
4,603,272	-		EFB2_04379	0.19	-0.1
4,603,272	-		EFB2_04379	0.19	-2.8
4,603,272	-		EFB2_04379	0.19	-1.8
4,603,272	-		EFB2_04379	0.19	+0.0
4,603,321	-		EFB2_04379	0.22	+1.0
4,603,335	+		EFB2_04379	0.22	-1.7
4,603,335	+		EFB2_04379	0.22	-1.1
4,603,335	+		EFB2_04379	0.22	-0.2
4,603,335	+		EFB2_04379	0.22	+1.5
4,603,335	+		EFB2_04379	0.22	-1.2
4,603,336	-		EFB2_04379	0.22	+2.1
4,603,336	-		EFB2_04379	0.22	-2.9
4,603,336	-		EFB2_04379	0.22	+0.7
4,603,336	-		EFB2_04379	0.22	-1.2
4,603,410	+		EFB2_04379	0.26	-1.8
4,603,411	-		EFB2_04379	0.27	+0.4
4,603,445	+		EFB2_04379	0.28	-1.0
4,603,446	-		EFB2_04379	0.28	-0.5
4,603,446	-		EFB2_04379	0.28	+1.7
4,603,446	-		EFB2_04379	0.28	+1.6
4,603,446	-		EFB2_04379	0.28	+0.7
4,603,488	+		EFB2_04379	0.31	-1.8
4,603,528	+		EFB2_04379	0.33	-1.3
4,603,534	+		EFB2_04379	0.33	-1.5
4,603,534	+		EFB2_04379	0.33	-1.9
4,603,534	+		EFB2_04379	0.33	-0.4
4,603,534	+		EFB2_04379	0.33	-0.8
4,603,535	-		EFB2_04379	0.33	+0.0
4,603,535	-		EFB2_04379	0.33	-0.8
4,603,570	-		EFB2_04379	0.35	-0.7
4,603,570	-		EFB2_04379	0.35	-1.0
4,603,576	-		EFB2_04379	0.36	+0.3
4,603,583	+		EFB2_04379	0.36	-2.0
4,603,624	+		EFB2_04379	0.38	-0.2
4,603,624	+		EFB2_04379	0.38	-0.1
4,603,625	-		EFB2_04379	0.38	-2.6
4,603,625	-		EFB2_04379	0.38	-0.6
4,603,640	+		EFB2_04379	0.39	-0.7
4,603,641	-		EFB2_04379	0.39	-3.6
4,603,689	+		EFB2_04379	0.42	+0.2
4,603,717	+		EFB2_04379	0.43	-1.9
4,603,774	+		EFB2_04379	0.47	-0.7
4,603,774	+		EFB2_04379	0.47	-0.7
4,603,774	+		EFB2_04379	0.47	-1.2
4,603,774	+		EFB2_04379	0.47	-1.5
4,603,774	+		EFB2_04379	0.47	-1.8
4,603,774	+		EFB2_04379	0.47	+0.0
4,603,774	+		EFB2_04379	0.47	-2.3
4,603,774	+		EFB2_04379	0.47	+0.6
4,603,774	+		EFB2_04379	0.47	+0.1
4,603,775	-		EFB2_04379	0.47	-0.7
4,603,775	-		EFB2_04379	0.47	-3.8
4,603,775	-		EFB2_04379	0.47	+2.4
4,603,775	-		EFB2_04379	0.47	-0.3
4,603,775	-		EFB2_04379	0.47	-2.1
4,603,775	-		EFB2_04379	0.47	-0.3
4,603,775	-		EFB2_04379	0.47	-1.5
4,603,775	-		EFB2_04379	0.47	-1.0
4,603,775	-		EFB2_04379	0.47	-1.8
4,603,775	-		EFB2_04379	0.47	-1.7
4,603,775	-		EFB2_04379	0.47	-3.3
4,603,775	-		EFB2_04379	0.47	+2.1
4,603,776	+		EFB2_04379	0.47	-2.5
4,603,776	+		EFB2_04379	0.47	+1.1
4,603,776	+		EFB2_04379	0.47	+0.6
4,603,776	+		EFB2_04379	0.47	+0.6
4,603,776	+		EFB2_04379	0.47	-1.5
4,603,776	+		EFB2_04379	0.47	-0.9
4,603,776	+		EFB2_04379	0.47	-1.6
4,603,776	+		EFB2_04379	0.47	-0.2
4,603,776	+		EFB2_04379	0.47	+0.5
4,603,776	+		EFB2_04379	0.47	+1.4
4,603,776	+		EFB2_04379	0.47	-1.6
4,603,777	-		EFB2_04379	0.47	+2.4
4,603,777	-		EFB2_04379	0.47	-1.6
4,603,777	-		EFB2_04379	0.47	-4.2
4,603,777	-		EFB2_04379	0.47	+0.1
4,603,777	-		EFB2_04379	0.47	-1.1
4,603,777	-		EFB2_04379	0.47	-0.4
4,603,777	-		EFB2_04379	0.47	-4.0
4,603,777	-		EFB2_04379	0.47	-0.5
4,603,777	-		EFB2_04379	0.47	-2.8
4,603,870	+		EFB2_04379	0.52	-0.4
4,603,870	+		EFB2_04379	0.52	-2.3
4,603,870	+		EFB2_04379	0.52	-2.9
4,603,870	+		EFB2_04379	0.52	-1.4
4,603,870	+		EFB2_04379	0.52	-3.2
4,603,871	-		EFB2_04379	0.52	+0.2
4,603,945	+		EFB2_04379	0.56	-1.4
4,603,945	+		EFB2_04379	0.56	+0.6
4,603,945	+		EFB2_04379	0.56	+0.1
4,603,945	+		EFB2_04379	0.56	-2.2
4,603,945	+		EFB2_04379	0.56	-1.7
4,603,945	+		EFB2_04379	0.56	-0.8
4,603,945	+		EFB2_04379	0.56	-1.4
4,603,945	+		EFB2_04379	0.56	-0.5
4,603,945	+		EFB2_04379	0.56	-0.9
4,603,945	+		EFB2_04379	0.56	-2.3
4,603,945	-		EFB2_04379	0.56	-0.7
4,603,946	-		EFB2_04379	0.56	-0.7
4,603,946	-		EFB2_04379	0.56	-0.4
4,603,946	-		EFB2_04379	0.56	-2.8
4,603,946	-		EFB2_04379	0.56	-0.9
4,603,946	-		EFB2_04379	0.56	-3.4
4,603,946	-		EFB2_04379	0.56	-2.7
4,603,946	-		EFB2_04379	0.56	-0.6
4,603,946	-		EFB2_04379	0.56	-0.5
4,603,946	-		EFB2_04379	0.56	+1.5
4,603,946	-		EFB2_04379	0.56	+0.5
4,603,946	-		EFB2_04379	0.56	-1.0
4,603,982	+		EFB2_04379	0.58	-0.5
4,603,999	+		EFB2_04379	0.59	-2.4
4,603,999	+		EFB2_04379	0.59	-0.9
4,603,999	+		EFB2_04379	0.59	-3.8
4,603,999	+		EFB2_04379	0.59	-1.0
4,603,999	+		EFB2_04379	0.59	-0.5
4,603,999	+		EFB2_04379	0.59	+0.2
4,603,999	+		EFB2_04379	0.59	-2.8
4,603,999	+		EFB2_04379	0.59	+0.8
4,603,999	+		EFB2_04379	0.59	-0.8
4,603,999	+		EFB2_04379	0.59	-0.7
4,603,999	+		EFB2_04379	0.59	-0.5
4,603,999	+		EFB2_04379	0.59	-0.2
4,603,999	+		EFB2_04379	0.59	-0.3
4,603,999	+		EFB2_04379	0.59	+0.7
4,603,999	+		EFB2_04379	0.59	-0.1
4,603,999	+		EFB2_04379	0.59	+1.4
4,603,999	+		EFB2_04379	0.59	-0.2
4,603,999	+		EFB2_04379	0.59	-0.0
4,603,999	+		EFB2_04379	0.59	-1.0
4,603,999	+		EFB2_04379	0.59	+1.4
4,604,000	-		EFB2_04379	0.59	-1.2
4,604,000	-		EFB2_04379	0.59	-0.4
4,604,000	-		EFB2_04379	0.59	-0.2
4,604,000	-		EFB2_04379	0.59	-0.2
4,604,000	-		EFB2_04379	0.59	-0.7
4,604,000	-		EFB2_04379	0.59	-0.8
4,604,000	-		EFB2_04379	0.59	-1.7
4,604,000	-		EFB2_04379	0.59	-0.1
4,604,000	-		EFB2_04379	0.59	+0.6
4,604,000	-		EFB2_04379	0.59	-0.1
4,604,000	-		EFB2_04379	0.59	-0.1
4,604,000	-		EFB2_04379	0.59	-2.1
4,604,000	-		EFB2_04379	0.59	-0.9
4,604,000	-		EFB2_04379	0.59	-1.1
4,604,000	-		EFB2_04379	0.59	-0.2
4,604,000	-		EFB2_04379	0.59	-1.5
4,604,000	-		EFB2_04379	0.59	-2.4
4,604,000	-		EFB2_04379	0.59	-1.9
4,604,000	-		EFB2_04379	0.59	-0.7
4,604,000	-		EFB2_04379	0.59	+0.5
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