Strain Fitness in Escherichia fergusonii Becca around EFB2_04052

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,259,480	+		EFB2_04050	0.17	-1.1
4,259,480	+		EFB2_04050	0.17	-0.2
4,259,480	+		EFB2_04050	0.17	-2.2
4,259,481	-		EFB2_04050	0.18	+0.2
4,259,481	-		EFB2_04050	0.18	+0.7
4,259,558	+		EFB2_04050	0.32	-0.4
4,259,558	+		EFB2_04050	0.32	+0.6
4,259,558	+		EFB2_04050	0.32	+0.1
4,259,558	+		EFB2_04050	0.32	-2.2
4,259,558	+		EFB2_04050	0.32	+3.1
4,259,558	+		EFB2_04050	0.32	-0.0
4,259,558	+		EFB2_04050	0.32	-0.7
4,259,558	+		EFB2_04050	0.32	+0.8
4,259,559	-		EFB2_04050	0.32	+2.9
4,259,559	-		EFB2_04050	0.32	-3.1
4,259,559	-		EFB2_04050	0.32	+0.2
4,259,559	-		EFB2_04050	0.32	+1.7
4,259,582	-		EFB2_04050	0.37	-0.9
4,259,582	-		EFB2_04050	0.37	+0.1
4,259,656	+		EFB2_04050	0.51	+0.5
4,259,656	+		EFB2_04050	0.51	+0.2
4,259,656	+		EFB2_04050	0.51	-0.8
4,259,693	+		EFB2_04050	0.58	+0.9
4,259,694	-		EFB2_04050	0.58	-1.8
4,259,694	-		EFB2_04050	0.58	+0.3
4,259,694	-		EFB2_04050	0.58	+0.2
4,259,768	+		EFB2_04050	0.72	-2.0
4,259,768	+		EFB2_04050	0.72	-2.0
4,259,768	+		EFB2_04050	0.72	-0.4
4,259,769	-		EFB2_04050	0.72	-0.6
4,259,769	-		EFB2_04050	0.72	+0.6
4,259,774	+		EFB2_04050	0.73	+0.4
4,259,792	+		EFB2_04050	0.77	-1.8
4,259,793	-		EFB2_04050	0.77	+0.9
4,259,793	-		EFB2_04050	0.77	-1.0
4,259,847	+		EFB2_04050	0.87	-1.4
4,259,848	-		EFB2_04050	0.87	+0.4
4,259,885	+				-0.5
4,259,885	+				+1.8
4,259,885	+				+0.8
4,259,886	-				-1.1
4,259,886	-				-0.4
4,259,886	-				+0.7
4,259,886	-				-0.2
4,259,895	+				+1.4
4,259,895	+				+1.9
4,259,895	+				+0.1
4,259,896	-				+0.1
4,259,918	-				-0.8
4,259,918	-				+1.3
4,259,918	-				-1.8
4,259,918	-				+0.6
4,259,972	+				+0.4
4,259,972	+				+2.2
4,259,972	+				-0.6
4,259,972	+				+0.7
4,259,973	-				+0.4
4,259,982	-				-0.8
4,259,982	-				-0.5
4,259,982	-				-1.3
4,260,053	+		EFB2_04051	0.22	+0.1
4,260,053	+		EFB2_04051	0.22	+1.1
4,260,053	+		EFB2_04051	0.22	+0.3
4,260,053	+		EFB2_04051	0.22	+0.4
4,260,053	+		EFB2_04051	0.22	+1.1
4,260,053	+		EFB2_04051	0.22	-1.9
4,260,053	+		EFB2_04051	0.22	-0.6
4,260,054	-		EFB2_04051	0.22	+0.7
4,260,054	-		EFB2_04051	0.22	+1.5
4,260,054	-		EFB2_04051	0.22	+0.5
4,260,054	-		EFB2_04051	0.22	+0.6
4,260,056	+		EFB2_04051	0.23	-2.7
4,260,056	+		EFB2_04051	0.23	-2.0
4,260,056	+		EFB2_04051	0.23	-3.1
4,260,056	+		EFB2_04051	0.23	-1.4
4,260,056	+		EFB2_04051	0.23	-1.2
4,260,056	+		EFB2_04051	0.23	+0.8
4,260,056	+		EFB2_04051	0.23	-1.5
4,260,056	+		EFB2_04051	0.23	-0.5
4,260,056	+		EFB2_04051	0.23	-0.6
4,260,057	-		EFB2_04051	0.23	+2.4
4,260,057	-		EFB2_04051	0.23	-2.5
4,260,057	-		EFB2_04051	0.23	+0.9
4,260,057	-		EFB2_04051	0.23	-0.7
4,260,057	-		EFB2_04051	0.23	-2.0
4,260,057	-		EFB2_04051	0.23	-1.2
4,260,057	-		EFB2_04051	0.23	-0.4
4,260,057	-		EFB2_04051	0.23	+1.0
4,260,057	-		EFB2_04051	0.23	+1.7
4,260,057	-		EFB2_04051	0.23	+0.2
4,260,057	-		EFB2_04051	0.23	+0.2
4,260,057	-		EFB2_04051	0.23	+1.5
4,260,057	-		EFB2_04051	0.23	-0.0
4,260,057	-		EFB2_04051	0.23	-0.0
4,260,057	-		EFB2_04051	0.23	-0.1
4,260,057	-		EFB2_04051	0.23	-2.0
4,260,068	+		EFB2_04051	0.27	+0.7
4,260,147	-		EFB2_04051	0.54	-1.0
4,260,147	-		EFB2_04051	0.54	-0.4
4,260,147	-		EFB2_04051	0.54	-0.3
4,260,199	-		EFB2_04051	0.71	-2.4
4,260,199	-		EFB2_04051	0.71	-1.0
4,260,199	-		EFB2_04051	0.71	+1.0
4,260,207	+		EFB2_04051	0.74	+0.3
4,260,207	+		EFB2_04051	0.74	-1.4
4,260,207	+		EFB2_04051	0.74	-3.2
4,260,207	+		EFB2_04051	0.74	+0.5
4,260,207	+		EFB2_04051	0.74	-0.8
4,260,207	+		EFB2_04051	0.74	-2.4
4,260,207	+		EFB2_04051	0.74	+0.4
4,260,208	-		EFB2_04051	0.74	-1.7
4,260,226	+		EFB2_04051	0.80	+0.4
4,260,236	+		EFB2_04051	0.84	-0.9
4,260,237	-		EFB2_04051	0.84	-2.3
4,260,237	-		EFB2_04051	0.84	+2.2
4,260,255	+				+0.1
4,260,256	-				-3.1
4,260,295	+				+0.0
4,260,295	+				+2.4
4,260,295	+				-1.5
4,260,295	+				+2.0
4,260,296	-				+0.4
4,260,296	-				+0.9
4,260,296	-				-1.0
4,260,296	-				-0.1
4,260,296	-				+1.4
4,260,296	-				-3.9
4,260,314	+				+1.9
4,260,314	+				+1.0
4,260,314	+				-0.1
4,260,314	+				-1.4
4,260,314	+				+0.7
4,260,314	+				-0.9
4,260,314	+				-0.6
4,260,314	+				+0.3
4,260,314	+				+0.6
4,260,314	+				+0.5
4,260,314	+				+0.8
4,260,314	+				-2.0
4,260,314	+				-2.3
4,260,314	+				+0.2
4,260,314	+				-1.4
4,260,315	-				-1.3
4,260,315	-				+0.4
4,260,315	-				-3.1
4,260,315	-				+0.9
4,260,315	-				-2.7
4,260,315	-				+0.2
4,260,315	-				+0.1
4,260,315	-				+1.1
4,260,315	-				-1.1
4,260,315	-				+0.2
4,260,315	-				-2.2
4,260,315	-				-1.0
4,260,315	-				-0.2
4,260,315	-				-1.3
4,260,315	-				+1.4
4,260,315	-				-2.3
4,260,317	+				+0.2
4,260,317	+				-1.0
4,260,317	+				+0.7
4,260,317	+				+0.2
4,260,317	+				+0.8
4,260,317	+				+0.1
4,260,317	+				+2.0
4,260,317	+				-1.4
4,260,317	+				-2.0
4,260,317	+				+0.7
4,260,317	+				+1.4
4,260,317	+				-0.5
4,260,317	+				-2.6
4,260,317	+				+0.5
4,260,317	+				+0.2
4,260,317	+				+0.4
4,260,317	+				+1.0
4,260,317	+				-1.7
4,260,317	+				-1.0
4,260,317	+				+1.7
4,260,317	+				-2.5
4,260,317	+				+0.6
4,260,317	+				-3.6
4,260,317	+				-1.9
4,260,317	+				-0.4
4,260,317	+				-1.9
4,260,317	+				-2.1
4,260,317	+				+1.6
4,260,317	+				-0.3
4,260,317	+				+0.2
4,260,317	+				-0.2
4,260,317	+				+0.6
4,260,317	+				+2.0
4,260,317	+				-0.6
4,260,317	+				+0.7
4,260,317	+				-1.3
4,260,317	+				-1.3
4,260,317	+				+1.0
4,260,317	+				-0.5
4,260,317	+				-3.2
4,260,317	+				-0.5
4,260,317	+				+1.8
4,260,317	+				+0.3
4,260,317	+				+1.8
4,260,317	+				-2.8
4,260,317	+				-3.1
4,260,317	+				+0.5
4,260,317	+				+0.8
4,260,317	+				+0.5
4,260,317	+				-0.1
4,260,317	+				-1.8
4,260,317	+				+1.1
4,260,317	+				+0.8
4,260,317	+				+1.3
4,260,317	+				-0.4
4,260,318	-				+0.3
4,260,318	-				-2.7
4,260,318	-				-0.2
4,260,318	-				-1.7
4,260,318	-				-1.5
4,260,318	-				+0.1
4,260,318	-				+0.8
4,260,318	-				+0.1
4,260,318	-				+1.4
4,260,318	-				-2.8
4,260,318	-				+1.2
4,260,318	-				+0.9
4,260,318	-				-0.1
4,260,318	-				-0.8
4,260,318	-				+0.8
4,260,318	-				-0.2
4,260,318	-				-0.2
4,260,318	-				-0.5
4,260,318	-				-0.8
4,260,318	-				-2.4
4,260,318	-				+0.4
4,260,318	-				-1.7
4,260,318	-				-0.8
4,260,318	-				-2.3
4,260,318	-				-0.3
4,260,318	-				-0.3
4,260,318	-				-0.1
4,260,318	-				+0.5
4,260,318	-				-4.0
4,260,318	-				-0.5
4,260,318	-				-1.0
4,260,318	-				-1.1
4,260,318	-				+0.2
4,260,377	+				-1.0
4,260,377	+				-1.2
4,260,377	+				+0.6
4,260,382	+				-1.1
4,260,383	-				-0.4
4,260,383	-				+1.2
4,260,387	+				-1.1
4,260,387	+				+0.2
4,260,388	-				-3.4
4,260,388	-				-0.8
4,260,388	-				-0.2
4,260,388	-				+0.5
4,260,388	-				-1.4
4,260,388	-				-1.5
4,260,392	+				-0.5
4,260,392	+				-1.0
4,260,392	+				-0.6
4,260,392	+				-1.8
4,260,392	+				-1.3
4,260,393	-				-0.1
4,260,393	-				+0.7
4,260,393	-				+0.1
4,260,393	-				+0.8
4,260,393	-				+0.3
4,260,393	-				-2.1
4,260,393	-				-2.4
4,260,393	-				+0.5
4,260,393	-				-1.6
4,260,393	-				-1.9
4,260,393	-				+1.2
4,260,462	+				-2.3
4,260,462	+				+2.2
4,260,463	-				-1.2
4,260,468	+				-0.6
4,260,468	+				-0.0
4,260,468	+				+0.6
4,260,469	-				+0.2
4,260,469	-				-1.5
4,260,471	+				-1.7
4,260,471	+				+1.6
4,260,471	+				+0.5
4,260,471	+				+1.0
4,260,471	+				+0.5
4,260,471	+				-0.2
4,260,472	-				-0.1
4,260,472	-				-0.1
4,260,472	-				-0.4
4,260,472	-				-0.3
4,260,472	-				-1.6
4,260,472	-				+0.2
4,260,472	-				+1.9
4,260,480	+				-0.6
4,260,480	+				+0.5
4,260,480	+				-0.1
4,260,480	+				-0.4
4,260,480	+				+0.5
4,260,481	-				+0.4
4,260,481	-				-1.8
4,260,481	-				-1.2
4,260,481	-				-1.4
4,260,481	-				-0.2
4,260,481	-				+0.8
4,260,481	-				+0.1
4,260,501	+				+0.5
4,260,501	+				-0.1
4,260,502	-				+0.2
4,260,502	-				-0.8
4,260,526	+				-0.1
4,260,526	+				-1.1
4,260,526	+				+0.8
4,260,527	-				+2.2
4,260,527	-				-1.9
4,260,527	-				+0.9
4,260,527	-				+0.5
4,260,527	-				-0.7
4,260,604	+		EFB2_04052	0.10	+0.1
4,260,604	+		EFB2_04052	0.10	-0.4
4,260,604	+		EFB2_04052	0.10	-3.0
4,260,604	+		EFB2_04052	0.10	-2.1
4,260,604	+		EFB2_04052	0.10	+0.4
4,260,605	-		EFB2_04052	0.10	-0.4
4,260,605	-		EFB2_04052	0.10	+0.1
4,260,606	+		EFB2_04052	0.10	-1.0
4,260,606	+		EFB2_04052	0.10	+1.0
4,260,606	+		EFB2_04052	0.10	-1.4
4,260,606	+		EFB2_04052	0.10	-0.3
4,260,606	+		EFB2_04052	0.10	-0.1
4,260,606	+		EFB2_04052	0.10	+0.0
4,260,606	+		EFB2_04052	0.10	+0.4
4,260,606	+		EFB2_04052	0.10	-0.1
4,260,606	+		EFB2_04052	0.10	-0.7
4,260,606	+		EFB2_04052	0.10	+0.6
4,260,606	+		EFB2_04052	0.10	-0.1
4,260,606	+		EFB2_04052	0.10	-0.2
4,260,606	+		EFB2_04052	0.10	-2.4
4,260,606	+		EFB2_04052	0.10	+0.5
4,260,607	-		EFB2_04052	0.10	+2.2
4,260,607	-		EFB2_04052	0.10	+0.7
4,260,607	-		EFB2_04052	0.10	-1.9
4,260,607	-		EFB2_04052	0.10	+1.5
4,260,607	-		EFB2_04052	0.10	+0.9
4,260,607	-		EFB2_04052	0.10	+0.0
4,260,607	-		EFB2_04052	0.10	-1.3
4,260,607	-		EFB2_04052	0.10	+0.8
4,260,607	-		EFB2_04052	0.10	-0.1
4,260,607	-		EFB2_04052	0.10	-2.1
4,260,607	-		EFB2_04052	0.10	-0.0
4,260,607	-		EFB2_04052	0.10	-1.5
4,260,607	-		EFB2_04052	0.10	-0.0
4,260,607	-		EFB2_04052	0.10	-0.8
4,260,607	-		EFB2_04052	0.10	-3.0
4,260,607	-		EFB2_04052	0.10	+1.3
4,260,607	-		EFB2_04052	0.10	-2.0
4,260,625	+		EFB2_04052	0.11	-0.3
4,260,625	+		EFB2_04052	0.11	+1.3
4,260,625	+		EFB2_04052	0.11	+1.1
4,260,625	+		EFB2_04052	0.11	+1.8
4,260,626	-		EFB2_04052	0.11	-3.3
4,260,626	-		EFB2_04052	0.11	+0.7
4,260,626	-		EFB2_04052	0.11	+0.1
4,260,626	-		EFB2_04052	0.11	-1.6
4,260,632	-		EFB2_04052	0.12	+0.5
4,260,648	+		EFB2_04052	0.13	+0.8
4,260,648	+		EFB2_04052	0.13	-0.5
4,260,648	+		EFB2_04052	0.13	-0.4
4,260,649	-		EFB2_04052	0.13	-0.3
4,260,649	-		EFB2_04052	0.13	-1.1
4,260,654	+		EFB2_04052	0.13	-0.6
4,260,654	+		EFB2_04052	0.13	-0.9
4,260,654	+		EFB2_04052	0.13	+1.7
4,260,654	+		EFB2_04052	0.13	-2.7
4,260,654	+		EFB2_04052	0.13	-0.3
4,260,654	+		EFB2_04052	0.13	-1.5
4,260,654	+		EFB2_04052	0.13	+1.1
4,260,654	+		EFB2_04052	0.13	+0.2
4,260,654	+		EFB2_04052	0.13	+0.6
4,260,654	+		EFB2_04052	0.13	-1.1
4,260,654	+		EFB2_04052	0.13	-2.4
4,260,654	+		EFB2_04052	0.13	+0.2
4,260,654	+		EFB2_04052	0.13	-2.5
4,260,654	+		EFB2_04052	0.13	+1.5
4,260,655	-		EFB2_04052	0.13	+0.0
4,260,655	-		EFB2_04052	0.13	+0.2
4,260,655	-		EFB2_04052	0.13	+1.1
4,260,655	-		EFB2_04052	0.13	-1.8
4,260,655	-		EFB2_04052	0.13	+0.2
4,260,655	-		EFB2_04052	0.13	+0.5
4,260,655	-		EFB2_04052	0.13	+2.3
4,260,655	-		EFB2_04052	0.13	-1.5
4,260,655	-		EFB2_04052	0.13	+0.4
4,260,655	-		EFB2_04052	0.13	+0.8
4,260,655	-		EFB2_04052	0.13	-3.1
4,260,655	-		EFB2_04052	0.13	-1.3
4,260,655	-		EFB2_04052	0.13	+0.6
4,260,655	-		EFB2_04052	0.13	+0.9
4,260,663	+		EFB2_04052	0.13	+1.6
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