Strain Fitness in Escherichia fergusonii Becca around EFB2_04041

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,247,692	+				+0.1
4,247,738	+				+2.0
4,247,738	+				-0.0
4,247,738	+				-1.3
4,247,738	+				-2.0
4,247,738	+				+0.8
4,247,739	-				-1.0
4,247,750	+				-0.5
4,247,751	-				-0.9
4,247,751	-				-1.0
4,247,751	-				+0.7
4,247,751	-				-1.4
4,247,761	+				+0.4
4,247,762	-				-0.2
4,247,793	+				+0.5
4,247,793	+				-0.8
4,247,793	+				+1.0
4,247,794	-				-0.6
4,247,794	-				-0.1
4,247,794	-				-3.2
4,247,794	-				-1.0
4,247,794	-				-0.8
4,247,794	-				+1.5
4,247,794	-				-0.5
4,247,794	-				-1.1
4,247,822	+				-0.1
4,247,822	+				+0.5
4,247,822	+				+0.3
4,247,822	+				+0.3
4,247,822	+				+0.1
4,247,822	+				+0.5
4,247,823	-				-0.9
4,247,823	-				-0.8
4,247,823	-				+1.0
4,247,823	-				+0.5
4,247,823	-				+0.3
4,247,823	-				-1.1
4,247,823	-				-0.2
4,247,830	-				+2.3
4,247,907	+		EFB2_04040	0.17	-0.6
4,247,917	+		EFB2_04040	0.18	+0.6
4,247,969	-		EFB2_04040	0.24	+1.1
4,248,038	+		EFB2_04040	0.31	+0.0
4,248,038	+		EFB2_04040	0.31	+0.9
4,248,038	+		EFB2_04040	0.31	-2.2
4,248,038	+		EFB2_04040	0.31	-2.0
4,248,038	+		EFB2_04040	0.31	+0.1
4,248,038	+		EFB2_04040	0.31	-1.1
4,248,038	+		EFB2_04040	0.31	+0.6
4,248,039	-		EFB2_04040	0.31	-0.4
4,248,039	-		EFB2_04040	0.31	+0.1
4,248,039	-		EFB2_04040	0.31	+2.2
4,248,039	-		EFB2_04040	0.31	+0.5
4,248,114	+		EFB2_04040	0.39	+0.4
4,248,114	+		EFB2_04040	0.39	+0.6
4,248,114	+		EFB2_04040	0.39	+0.7
4,248,114	+		EFB2_04040	0.39	-0.5
4,248,115	-		EFB2_04040	0.39	-0.1
4,248,115	-		EFB2_04040	0.39	+1.3
4,248,120	+		EFB2_04040	0.40	-2.2
4,248,120	+		EFB2_04040	0.40	-0.8
4,248,120	+		EFB2_04040	0.40	-1.9
4,248,120	+		EFB2_04040	0.40	+1.7
4,248,120	+		EFB2_04040	0.40	+1.2
4,248,120	+		EFB2_04040	0.40	-0.4
4,248,121	-		EFB2_04040	0.40	-0.2
4,248,121	-		EFB2_04040	0.40	-0.6
4,248,121	-		EFB2_04040	0.40	-0.4
4,248,121	-		EFB2_04040	0.40	+2.1
4,248,142	-		EFB2_04040	0.42	+1.1
4,248,142	-		EFB2_04040	0.42	-0.1
4,248,142	-		EFB2_04040	0.42	+0.4
4,248,231	+		EFB2_04040	0.52	-2.2
4,248,231	+		EFB2_04040	0.52	+0.1
4,248,231	+		EFB2_04040	0.52	+0.9
4,248,231	+		EFB2_04040	0.52	+0.3
4,248,231	+		EFB2_04040	0.52	-1.3
4,248,231	+		EFB2_04040	0.52	+0.4
4,248,231	+		EFB2_04040	0.52	+1.8
4,248,232	-		EFB2_04040	0.52	-1.0
4,248,232	-		EFB2_04040	0.52	+0.6
4,248,232	-		EFB2_04040	0.52	+0.9
4,248,232	-		EFB2_04040	0.52	+0.9
4,248,263	+		EFB2_04040	0.55	-1.6
4,248,263	+		EFB2_04040	0.55	+0.4
4,248,263	+		EFB2_04040	0.55	+1.3
4,248,263	+		EFB2_04040	0.55	-0.5
4,248,282	+		EFB2_04040	0.57	-0.3
4,248,282	+		EFB2_04040	0.57	+1.3
4,248,283	-		EFB2_04040	0.57	+0.6
4,248,283	-		EFB2_04040	0.57	+1.5
4,248,327	+		EFB2_04040	0.62	-0.1
4,248,394	+		EFB2_04040	0.69	-0.8
4,248,395	-		EFB2_04040	0.69	+0.7
4,248,414	+		EFB2_04040	0.71	+0.9
4,248,414	+		EFB2_04040	0.71	+1.2
4,248,414	+		EFB2_04040	0.71	+0.0
4,248,414	+		EFB2_04040	0.71	-0.5
4,248,414	+		EFB2_04040	0.71	-0.5
4,248,414	+		EFB2_04040	0.71	+0.6
4,248,415	-		EFB2_04040	0.71	-3.7
4,248,485	+		EFB2_04040	0.79	-1.3
4,248,486	-		EFB2_04040	0.79	-0.5
4,248,492	+		EFB2_04040	0.80	-2.1
4,248,492	+		EFB2_04040	0.80	-1.3
4,248,492	+		EFB2_04040	0.80	-0.9
4,248,492	+		EFB2_04040	0.80	-1.0
4,248,492	+		EFB2_04040	0.80	-0.5
4,248,577	+		EFB2_04040	0.89	+1.9
4,248,577	+		EFB2_04040	0.89	-1.6
4,248,577	+		EFB2_04040	0.89	+0.5
4,248,577	+		EFB2_04040	0.89	-1.0
4,248,577	+		EFB2_04040	0.89	+0.3
4,248,577	+		EFB2_04040	0.89	-2.3
4,248,577	+		EFB2_04040	0.89	-2.2
4,248,577	+		EFB2_04040	0.89	-0.4
4,248,577	+		EFB2_04040	0.89	+1.1
4,248,577	+		EFB2_04040	0.89	-1.0
4,248,577	+		EFB2_04040	0.89	+0.8
4,248,577	+		EFB2_04040	0.89	-2.9
4,248,577	+		EFB2_04040	0.89	+0.2
4,248,577	+		EFB2_04040	0.89	+0.2
4,248,577	+		EFB2_04040	0.89	-1.8
4,248,577	+		EFB2_04040	0.89	+0.1
4,248,577	+		EFB2_04040	0.89	+0.2
4,248,577	+		EFB2_04040	0.89	+0.4
4,248,577	+		EFB2_04040	0.89	+0.8
4,248,577	+		EFB2_04040	0.89	+0.0
4,248,577	+		EFB2_04040	0.89	+1.1
4,248,577	+		EFB2_04040	0.89	+0.0
4,248,578	-		EFB2_04040	0.89	+0.0
4,248,578	-		EFB2_04040	0.89	-1.0
4,248,578	-		EFB2_04040	0.89	-2.4
4,248,578	-		EFB2_04040	0.89	+1.6
4,248,578	-		EFB2_04040	0.89	-1.3
4,248,578	-		EFB2_04040	0.89	-0.2
4,248,578	-		EFB2_04040	0.89	-1.3
4,248,578	-		EFB2_04040	0.89	+1.4
4,248,578	-		EFB2_04040	0.89	-0.2
4,248,578	-		EFB2_04040	0.89	+2.1
4,248,578	-		EFB2_04040	0.89	-0.3
4,248,578	-		EFB2_04040	0.89	-1.9
4,248,578	-		EFB2_04040	0.89	-1.9
4,248,578	-		EFB2_04040	0.89	-1.5
4,248,578	-		EFB2_04040	0.89	-1.0
4,248,578	-		EFB2_04040	0.89	+0.8
4,248,578	-		EFB2_04040	0.89	+1.5
4,248,578	-		EFB2_04040	0.89	+0.0
4,248,578	-		EFB2_04040	0.89	-0.1
4,248,645	+				-2.3
4,248,645	+				-0.1
4,248,645	+				-1.9
4,248,646	-				+0.0
4,248,646	-				-1.3
4,248,646	-				-1.9
4,248,646	-				+1.0
4,248,646	-				+1.0
4,248,669	-				+0.5
4,248,669	-				+1.0
4,248,692	+				+0.0
4,248,692	+				-0.3
4,248,709	+				+0.4
4,248,709	+				-0.8
4,248,709	+				-0.0
4,248,709	+				+0.7
4,248,709	+				+1.2
4,248,709	+				-0.5
4,248,709	+				-0.5
4,248,709	+				-0.2
4,248,709	+				-0.0
4,248,710	-				+0.6
4,248,710	-				+0.3
4,248,710	-				+0.0
4,248,710	-				+0.3
4,248,710	-				+1.1
4,248,710	-				+0.2
4,248,710	-				+0.6
4,248,710	-				-0.3
4,248,713	+				+0.3
4,248,713	+				-1.0
4,248,713	+				+0.9
4,248,713	+				-0.8
4,248,713	+				-2.1
4,248,713	+				+0.7
4,248,713	+				+2.2
4,248,713	+				+2.2
4,248,713	+				-1.0
4,248,713	+				+0.3
4,248,713	+				+0.1
4,248,713	+				-0.0
4,248,713	+				-1.1
4,248,714	-				-0.4
4,248,714	-				-0.8
4,248,714	-				-0.5
4,248,714	-				+0.6
4,248,714	-				+0.7
4,248,714	-				+0.7
4,248,714	-				-2.9
4,248,714	-				+0.2
4,248,714	-				-0.5
4,248,714	-				-1.8
4,248,714	-				+0.4
4,248,714	-				+0.6
4,248,714	-				+0.5
4,248,742	+				+0.3
4,248,743	-				+0.7
4,248,763	-				+0.2
4,248,773	+				-2.0
4,248,774	-				-0.9
4,248,774	-				+0.9
4,248,774	-				+1.0
4,248,792	+				-2.1
4,248,792	+				-2.0
4,248,792	+				-2.9
4,248,793	-				-2.4
4,248,793	-				-0.2
4,248,793	-				-2.3
4,248,795	+				+0.9
4,248,795	+				-4.3
4,248,795	+				+0.5
4,248,795	+				+0.2
4,248,795	+				-0.1
4,248,795	+				+0.9
4,248,795	+				-0.1
4,248,795	+				-0.6
4,248,795	+				+0.2
4,248,795	+				+0.7
4,248,796	-				+0.4
4,248,802	+				+0.4
4,248,803	-				-2.0
4,248,804	+				-0.2
4,248,804	+				+0.0
4,248,804	+				+0.3
4,248,804	+				-0.9
4,248,804	+				-0.8
4,248,804	+				+0.3
4,248,804	+				+1.3
4,248,804	+				+0.7
4,248,804	+				+0.0
4,248,804	+				-0.2
4,248,804	+				-1.7
4,248,804	+				-1.2
4,248,804	+				+2.0
4,248,804	+				+1.0
4,248,804	+				+0.2
4,248,804	+				+1.3
4,248,804	+				+1.9
4,248,804	+				+0.1
4,248,804	+				+0.4
4,248,804	+				+1.0
4,248,804	+				+1.1
4,248,804	+				-0.3
4,248,804	+				-0.9
4,248,805	-				+1.8
4,248,805	-				-0.0
4,248,805	-				-0.8
4,248,805	-				-1.2
4,248,805	-				-2.1
4,248,805	-				+0.7
4,248,805	-				-0.5
4,248,805	-				-0.5
4,248,805	-				-0.6
4,248,805	-				-0.6
4,248,805	-				-0.1
4,248,805	-				-0.9
4,248,805	-				-0.4
4,248,805	-				+0.2
4,248,805	-				+0.3
4,248,805	-				-1.0
4,248,805	-				-2.2
4,248,805	-				-0.8
4,248,805	-				-0.3
4,248,805	-				-1.0
4,248,805	-				-0.4
4,248,805	-				+1.1
4,248,805	-				+1.1
4,248,805	-				-0.3
4,248,805	-				+0.2
4,248,805	-				-2.8
4,248,805	-				-0.1
4,248,853	+				+0.2
4,248,853	+				-3.8
4,248,901	+				+1.1
4,248,902	-				-0.3
4,248,902	-				+0.3
4,248,912	+				-3.0
4,248,912	+				+1.1
4,248,912	+				+0.5
4,248,912	+				+0.4
4,248,913	-				-0.2
4,248,991	+		EFB2_04041	0.13	-1.0
4,248,991	+		EFB2_04041	0.13	-0.2
4,248,992	-		EFB2_04041	0.13	-0.8
4,249,097	+		EFB2_04041	0.17	-1.2
4,249,097	+		EFB2_04041	0.17	-0.4
4,249,097	+		EFB2_04041	0.17	-0.7
4,249,097	+		EFB2_04041	0.17	+1.6
4,249,103	-		EFB2_04041	0.17	+1.5
4,249,151	-		EFB2_04041	0.19	-2.2
4,249,153	-		EFB2_04041	0.19	+0.1
4,249,205	+		EFB2_04041	0.21	-1.9
4,249,205	+		EFB2_04041	0.21	+0.8
4,249,205	+		EFB2_04041	0.21	+0.8
4,249,206	-		EFB2_04041	0.21	+1.0
4,249,206	-		EFB2_04041	0.21	+1.8
4,249,206	-		EFB2_04041	0.21	+0.1
4,249,206	-		EFB2_04041	0.21	+0.4
4,249,206	-		EFB2_04041	0.21	+0.0
4,249,219	+		EFB2_04041	0.22	+3.2
4,249,219	+		EFB2_04041	0.22	+0.2
4,249,219	+		EFB2_04041	0.22	-0.4
4,249,219	+		EFB2_04041	0.22	+0.4
4,249,219	+		EFB2_04041	0.22	+1.0
4,249,219	+		EFB2_04041	0.22	-1.0
4,249,220	-		EFB2_04041	0.22	-3.6
4,249,220	-		EFB2_04041	0.22	-0.8
4,249,220	-		EFB2_04041	0.22	-0.0
4,249,220	-		EFB2_04041	0.22	-0.4
4,249,220	-		EFB2_04041	0.22	+0.5
4,249,220	-		EFB2_04041	0.22	-2.5
4,249,220	-		EFB2_04041	0.22	-0.2
4,249,220	-		EFB2_04041	0.22	+0.2
4,249,220	-		EFB2_04041	0.22	+0.3
4,249,220	-		EFB2_04041	0.22	+1.3
4,249,220	-		EFB2_04041	0.22	+0.8
4,249,220	-		EFB2_04041	0.22	+0.7
4,249,220	-		EFB2_04041	0.22	+0.4
4,249,220	-		EFB2_04041	0.22	+0.2
4,249,220	-		EFB2_04041	0.22	+0.1
4,249,221	+		EFB2_04041	0.22	+1.2
4,249,221	+		EFB2_04041	0.22	-1.2
4,249,221	+		EFB2_04041	0.22	-2.5
4,249,221	+		EFB2_04041	0.22	-0.1
4,249,221	+		EFB2_04041	0.22	+0.9
4,249,221	+		EFB2_04041	0.22	-0.6
4,249,221	+		EFB2_04041	0.22	-0.9
4,249,221	+		EFB2_04041	0.22	+1.8
4,249,221	+		EFB2_04041	0.22	+0.7
4,249,221	+		EFB2_04041	0.22	-0.5
4,249,221	+		EFB2_04041	0.22	+1.3
4,249,221	+		EFB2_04041	0.22	+0.2
4,249,221	+		EFB2_04041	0.22	-0.3
4,249,221	+		EFB2_04041	0.22	+2.0
4,249,222	-		EFB2_04041	0.22	-0.4
4,249,222	-		EFB2_04041	0.22	-1.9
4,249,222	-		EFB2_04041	0.22	-0.4
4,249,222	-		EFB2_04041	0.22	+1.0
4,249,222	-		EFB2_04041	0.22	-0.4
4,249,222	-		EFB2_04041	0.22	+1.2
4,249,222	-		EFB2_04041	0.22	-2.8
4,249,222	-		EFB2_04041	0.22	+0.2
4,249,222	-		EFB2_04041	0.22	+0.5
4,249,222	-		EFB2_04041	0.22	-0.6
4,249,222	-		EFB2_04041	0.22	+0.3
4,249,222	-		EFB2_04041	0.22	-0.8
4,249,222	-		EFB2_04041	0.22	-1.2
4,249,222	-		EFB2_04041	0.22	-0.2
4,249,222	-		EFB2_04041	0.22	-0.4
4,249,222	-		EFB2_04041	0.22	+0.1
4,249,222	-		EFB2_04041	0.22	-2.4
4,249,222	-		EFB2_04041	0.22	+0.2
4,249,222	-		EFB2_04041	0.22	+0.2
4,249,222	-		EFB2_04041	0.22	+0.1
4,249,222	-		EFB2_04041	0.22	+2.7
4,249,222	-		EFB2_04041	0.22	+0.3
4,249,301	-		EFB2_04041	0.25	-0.6
4,249,332	+		EFB2_04041	0.26	+0.1
4,249,332	+		EFB2_04041	0.26	+0.8
4,249,332	+		EFB2_04041	0.26	-1.6
4,249,332	+		EFB2_04041	0.26	+0.8
4,249,332	+		EFB2_04041	0.26	+2.1
4,249,333	-		EFB2_04041	0.26	+0.2
4,249,333	-		EFB2_04041	0.26	+1.5
4,249,333	-		EFB2_04041	0.26	+1.2
4,249,333	-		EFB2_04041	0.26	-0.9
4,249,333	-		EFB2_04041	0.26	+1.2
4,249,333	-		EFB2_04041	0.26	-1.3
4,249,333	-		EFB2_04041	0.26	+0.5
4,249,333	-		EFB2_04041	0.26	-0.4
4,249,342	+		EFB2_04041	0.27	-2.1
4,249,342	+		EFB2_04041	0.27	-0.6
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