Strain Fitness in Escherichia fergusonii Becca around EFB2_03833

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,014,910	+		EFB2_03832	0.26	-1.5
4,014,910	+		EFB2_03832	0.26	-0.7
4,014,911	-		EFB2_03832	0.26	-1.1
4,014,911	-		EFB2_03832	0.26	-2.6
4,014,911	-		EFB2_03832	0.26	-0.3
4,014,911	-		EFB2_03832	0.26	-0.1
4,014,911	-		EFB2_03832	0.26	+0.5
4,014,934	+		EFB2_03832	0.28	-0.1
4,014,934	+		EFB2_03832	0.28	+0.5
4,014,934	+		EFB2_03832	0.28	+0.4
4,014,935	-		EFB2_03832	0.28	-3.4
4,015,039	+		EFB2_03832	0.36	-0.4
4,015,039	+		EFB2_03832	0.36	-0.7
4,015,039	+		EFB2_03832	0.36	+2.8
4,015,039	+		EFB2_03832	0.36	-0.9
4,015,039	+		EFB2_03832	0.36	+1.1
4,015,039	+		EFB2_03832	0.36	-2.3
4,015,039	+		EFB2_03832	0.36	+0.3
4,015,039	+		EFB2_03832	0.36	-0.1
4,015,039	+		EFB2_03832	0.36	+2.7
4,015,040	-		EFB2_03832	0.36	-0.1
4,015,040	-		EFB2_03832	0.36	+0.6
4,015,040	-		EFB2_03832	0.36	+0.8
4,015,041	+		EFB2_03832	0.37	+1.3
4,015,041	+		EFB2_03832	0.37	-2.5
4,015,041	+		EFB2_03832	0.37	+0.2
4,015,042	-		EFB2_03832	0.37	-1.5
4,015,042	-		EFB2_03832	0.37	-1.3
4,015,042	-		EFB2_03832	0.37	+1.0
4,015,042	-		EFB2_03832	0.37	+1.4
4,015,042	-		EFB2_03832	0.37	-0.9
4,015,042	-		EFB2_03832	0.37	+0.6
4,015,042	-		EFB2_03832	0.37	-1.1
4,015,075	-		EFB2_03832	0.39	-1.3
4,015,075	-		EFB2_03832	0.39	+1.2
4,015,075	-		EFB2_03832	0.39	-0.9
4,015,144	+		EFB2_03832	0.45	+1.9
4,015,144	+		EFB2_03832	0.45	+0.2
4,015,144	+		EFB2_03832	0.45	+0.0
4,015,144	+		EFB2_03832	0.45	+0.9
4,015,144	+		EFB2_03832	0.45	+0.6
4,015,144	+		EFB2_03832	0.45	+2.6
4,015,144	+		EFB2_03832	0.45	+1.0
4,015,144	+		EFB2_03832	0.45	-1.6
4,015,144	+		EFB2_03832	0.45	+0.6
4,015,144	+		EFB2_03832	0.45	-0.4
4,015,144	+		EFB2_03832	0.45	-0.3
4,015,144	+		EFB2_03832	0.45	-0.4
4,015,144	+		EFB2_03832	0.45	+0.4
4,015,144	+		EFB2_03832	0.45	-0.4
4,015,144	+		EFB2_03832	0.45	-0.5
4,015,145	-		EFB2_03832	0.45	+0.4
4,015,145	-		EFB2_03832	0.45	-0.2
4,015,145	-		EFB2_03832	0.45	-0.4
4,015,145	-		EFB2_03832	0.45	-0.2
4,015,145	-		EFB2_03832	0.45	-1.4
4,015,145	-		EFB2_03832	0.45	-1.0
4,015,145	-		EFB2_03832	0.45	-0.8
4,015,145	-		EFB2_03832	0.45	+0.4
4,015,145	-		EFB2_03832	0.45	+2.2
4,015,145	-		EFB2_03832	0.45	+0.6
4,015,145	-		EFB2_03832	0.45	+2.3
4,015,145	-		EFB2_03832	0.45	-1.1
4,015,145	-		EFB2_03832	0.45	+0.3
4,015,145	-		EFB2_03832	0.45	+0.9
4,015,145	-		EFB2_03832	0.45	-1.5
4,015,152	+		EFB2_03832	0.46	+0.8
4,015,152	+		EFB2_03832	0.46	-1.4
4,015,153	-		EFB2_03832	0.46	+0.8
4,015,153	-		EFB2_03832	0.46	-1.6
4,015,153	-		EFB2_03832	0.46	-1.1
4,015,173	+		EFB2_03832	0.47	-0.5
4,015,173	+		EFB2_03832	0.47	+0.6
4,015,174	-		EFB2_03832	0.47	+0.8
4,015,174	-		EFB2_03832	0.47	-3.0
4,015,174	-		EFB2_03832	0.47	+0.4
4,015,202	+		EFB2_03832	0.50	-0.6
4,015,202	+		EFB2_03832	0.50	-0.2
4,015,202	+		EFB2_03832	0.50	-1.2
4,015,202	+		EFB2_03832	0.50	-0.0
4,015,202	+		EFB2_03832	0.50	-3.1
4,015,202	+		EFB2_03832	0.50	+0.5
4,015,202	+		EFB2_03832	0.50	+0.0
4,015,202	+		EFB2_03832	0.50	-1.1
4,015,202	+		EFB2_03832	0.50	-2.7
4,015,203	-		EFB2_03832	0.50	+0.9
4,015,203	-		EFB2_03832	0.50	+0.5
4,015,203	-		EFB2_03832	0.50	-1.1
4,015,284	+		EFB2_03832	0.56	-1.7
4,015,284	+		EFB2_03832	0.56	-1.6
4,015,284	+		EFB2_03832	0.56	+0.3
4,015,285	-		EFB2_03832	0.57	+3.8
4,015,285	-		EFB2_03832	0.57	-0.6
4,015,366	+		EFB2_03832	0.63	+1.4
4,015,366	+		EFB2_03832	0.63	+1.4
4,015,366	+		EFB2_03832	0.63	-1.4
4,015,367	-		EFB2_03832	0.63	+0.2
4,015,428	+		EFB2_03832	0.68	-0.9
4,015,428	+		EFB2_03832	0.68	+0.6
4,015,428	+		EFB2_03832	0.68	+0.3
4,015,428	+		EFB2_03832	0.68	+1.0
4,015,428	+		EFB2_03832	0.68	-0.2
4,015,428	+		EFB2_03832	0.68	-1.0
4,015,429	-		EFB2_03832	0.68	+2.4
4,015,429	-		EFB2_03832	0.68	-1.9
4,015,436	+		EFB2_03832	0.69	+1.6
4,015,436	+		EFB2_03832	0.69	-1.3
4,015,436	+		EFB2_03832	0.69	+2.2
4,015,436	+		EFB2_03832	0.69	+0.5
4,015,436	+		EFB2_03832	0.69	+0.7
4,015,436	+		EFB2_03832	0.69	+0.8
4,015,437	-		EFB2_03832	0.69	-0.6
4,015,437	-		EFB2_03832	0.69	+0.7
4,015,437	-		EFB2_03832	0.69	-0.6
4,015,437	-		EFB2_03832	0.69	+1.9
4,015,437	-		EFB2_03832	0.69	-0.7
4,015,437	-		EFB2_03832	0.69	+0.4
4,015,462	-		EFB2_03832	0.71	-1.1
4,015,462	-		EFB2_03832	0.71	-3.0
4,015,462	-		EFB2_03832	0.71	+0.4
4,015,470	+		EFB2_03832	0.72	+1.3
4,015,470	+		EFB2_03832	0.72	+0.1
4,015,470	+		EFB2_03832	0.72	-2.5
4,015,471	-		EFB2_03832	0.72	+2.4
4,015,483	+		EFB2_03832	0.73	+0.1
4,015,483	+		EFB2_03832	0.73	+0.2
4,015,483	+		EFB2_03832	0.73	-1.2
4,015,484	-		EFB2_03832	0.73	-0.2
4,015,484	-		EFB2_03832	0.73	-1.8
4,015,484	-		EFB2_03832	0.73	+1.0
4,015,484	-		EFB2_03832	0.73	-2.7
4,015,490	+		EFB2_03832	0.73	-0.8
4,015,490	+		EFB2_03832	0.73	+0.8
4,015,490	+		EFB2_03832	0.73	-0.2
4,015,491	-		EFB2_03832	0.73	-0.8
4,015,491	-		EFB2_03832	0.73	+2.5
4,015,515	+		EFB2_03832	0.75	+0.2
4,015,516	-		EFB2_03832	0.75	-2.7
4,015,536	-		EFB2_03832	0.77	-0.0
4,015,536	-		EFB2_03832	0.77	+1.6
4,015,578	+		EFB2_03832	0.81	+0.9
4,015,578	+		EFB2_03832	0.81	-1.7
4,015,578	+		EFB2_03832	0.81	-2.2
4,015,578	+		EFB2_03832	0.81	-0.3
4,015,578	+		EFB2_03832	0.81	+0.2
4,015,578	+		EFB2_03832	0.81	+0.6
4,015,578	+		EFB2_03832	0.81	+0.4
4,015,579	-		EFB2_03832	0.81	-0.3
4,015,579	-		EFB2_03832	0.81	-1.3
4,015,579	-		EFB2_03832	0.81	-0.8
4,015,620	+		EFB2_03832	0.84	+0.7
4,015,656	+		EFB2_03832	0.87	-0.8
4,015,656	+		EFB2_03832	0.87	+0.8
4,015,656	+		EFB2_03832	0.87	-3.1
4,015,656	+		EFB2_03832	0.87	+1.4
4,015,656	+		EFB2_03832	0.87	-2.2
4,015,656	+		EFB2_03832	0.87	+0.6
4,015,656	+		EFB2_03832	0.87	+1.5
4,015,656	+		EFB2_03832	0.87	-0.8
4,015,656	+		EFB2_03832	0.87	-0.5
4,015,656	+		EFB2_03832	0.87	+1.1
4,015,656	+		EFB2_03832	0.87	-1.7
4,015,656	+		EFB2_03832	0.87	-0.3
4,015,656	+		EFB2_03832	0.87	-1.8
4,015,656	+		EFB2_03832	0.87	-0.9
4,015,656	+		EFB2_03832	0.87	-0.4
4,015,656	+		EFB2_03832	0.87	-0.1
4,015,656	+		EFB2_03832	0.87	+0.1
4,015,656	+		EFB2_03832	0.87	+0.3
4,015,656	+		EFB2_03832	0.87	-1.4
4,015,656	+		EFB2_03832	0.87	+1.7
4,015,656	+		EFB2_03832	0.87	-1.4
4,015,656	+		EFB2_03832	0.87	+0.0
4,015,656	+		EFB2_03832	0.87	+2.1
4,015,656	+		EFB2_03832	0.87	+0.9
4,015,656	+		EFB2_03832	0.87	+0.5
4,015,656	+		EFB2_03832	0.87	+1.2
4,015,656	+		EFB2_03832	0.87	-0.3
4,015,656	+		EFB2_03832	0.87	+1.3
4,015,656	+		EFB2_03832	0.87	+0.8
4,015,656	+		EFB2_03832	0.87	-1.3
4,015,657	-		EFB2_03832	0.87	+0.8
4,015,657	-		EFB2_03832	0.87	+0.1
4,015,657	-		EFB2_03832	0.87	-3.1
4,015,657	-		EFB2_03832	0.87	+0.1
4,015,657	-		EFB2_03832	0.87	-0.7
4,015,657	-		EFB2_03832	0.87	-0.7
4,015,657	-		EFB2_03832	0.87	+1.0
4,015,657	-		EFB2_03832	0.87	-0.3
4,015,657	-		EFB2_03832	0.87	+0.1
4,015,657	-		EFB2_03832	0.87	-0.5
4,015,657	-		EFB2_03832	0.87	-1.8
4,015,657	-		EFB2_03832	0.87	-1.3
4,015,657	-		EFB2_03832	0.87	-1.2
4,015,657	-		EFB2_03832	0.87	+2.2
4,015,657	-		EFB2_03832	0.87	-3.2
4,015,657	-		EFB2_03832	0.87	-1.3
4,015,657	-		EFB2_03832	0.87	-1.4
4,015,657	-		EFB2_03832	0.87	-0.6
4,015,657	-		EFB2_03832	0.87	+0.1
4,015,657	-		EFB2_03832	0.87	-0.4
4,015,660	+		EFB2_03832	0.87	+0.4
4,015,660	+		EFB2_03832	0.87	+0.4
4,015,660	+		EFB2_03832	0.87	+0.0
4,015,660	+		EFB2_03832	0.87	-0.9
4,015,660	+		EFB2_03832	0.87	-0.4
4,015,660	+		EFB2_03832	0.87	+0.6
4,015,660	+		EFB2_03832	0.87	-0.5
4,015,660	+		EFB2_03832	0.87	+0.4
4,015,660	+		EFB2_03832	0.87	+0.8
4,015,660	+		EFB2_03832	0.87	-1.1
4,015,661	-		EFB2_03832	0.87	-1.5
4,015,661	-		EFB2_03832	0.87	-0.2
4,015,661	-		EFB2_03832	0.87	+0.5
4,015,661	-		EFB2_03832	0.87	-1.3
4,015,699	-				-2.3
4,015,699	-				+0.3
4,015,699	-				+0.2
4,015,727	+				+0.6
4,015,727	+				+1.0
4,015,727	+				+0.6
4,015,727	+				+1.5
4,015,727	+				-0.8
4,015,727	+				-1.6
4,015,727	+				-0.7
4,015,727	+				-0.8
4,015,727	+				+0.2
4,015,727	+				+1.4
4,015,727	+				-2.9
4,015,727	+				+0.0
4,015,727	+				+0.6
4,015,728	-				-0.6
4,015,728	-				+1.0
4,015,728	-				-1.9
4,015,728	-				+1.2
4,015,728	-				+0.6
4,015,728	-				+0.2
4,015,728	-				+0.8
4,015,728	-				+1.6
4,015,728	-				+2.3
4,015,728	-				-0.5
4,015,728	-				+1.1
4,015,825	+				+0.4
4,015,825	+				+0.3
4,015,825	+				+0.4
4,015,828	+				+0.8
4,015,828	+				+0.6
4,015,861	+				+0.8
4,015,861	+				+0.2
4,015,866	-				-1.3
4,015,866	-				+0.7
4,015,866	-				-1.2
4,015,875	+				+0.2
4,015,875	+				-2.3
4,015,875	+				+1.0
4,015,875	+				+0.4
4,015,876	-				+1.3
4,015,876	-				-3.9
4,015,885	+				-0.1
4,015,885	+				+0.6
4,015,885	+				-0.1
4,015,885	+				-0.2
4,015,885	+				+0.7
4,015,885	+				+0.9
4,015,885	+				-0.6
4,015,885	+				+0.6
4,015,886	-				+0.7
4,015,886	-				-1.2
4,015,886	-				-0.6
4,015,886	-				-1.5
4,015,886	-				+0.8
4,015,886	-				-3.4
4,015,886	-				+0.0
4,015,886	-				+2.0
4,015,886	-				-1.6
4,015,886	-				-0.7
4,015,886	-				-2.0
4,015,886	-				-2.0
4,015,886	-				+0.7
4,015,896	+				-1.3
4,015,896	+				-0.2
4,015,897	-				-0.9
4,015,935	-				-1.7
4,015,968	-		EFB2_03833	0.13	-2.6
4,015,968	-		EFB2_03833	0.13	+1.8
4,015,977	+		EFB2_03833	0.15	+0.7
4,015,984	+		EFB2_03833	0.16	+0.0
4,015,984	+		EFB2_03833	0.16	-1.7
4,015,984	+		EFB2_03833	0.16	+1.2
4,015,985	-		EFB2_03833	0.16	+1.7
4,015,985	-		EFB2_03833	0.16	+1.0
4,015,985	-		EFB2_03833	0.16	-1.1
4,015,985	-		EFB2_03833	0.16	+1.2
4,015,987	+		EFB2_03833	0.16	-3.2
4,015,987	+		EFB2_03833	0.16	-0.8
4,015,987	+		EFB2_03833	0.16	+1.4
4,015,988	-		EFB2_03833	0.16	+0.8
4,015,988	-		EFB2_03833	0.16	-0.0
4,015,988	-		EFB2_03833	0.16	+2.5
4,016,001	+		EFB2_03833	0.18	-0.7
4,016,038	+		EFB2_03833	0.23	-0.7
4,016,038	+		EFB2_03833	0.23	+0.3
4,016,039	-		EFB2_03833	0.23	-0.1
4,016,039	-		EFB2_03833	0.23	+1.1
4,016,043	+		EFB2_03833	0.23	-0.8
4,016,043	+		EFB2_03833	0.23	+0.3
4,016,043	+		EFB2_03833	0.23	-0.2
4,016,043	+		EFB2_03833	0.23	-0.8
4,016,043	+		EFB2_03833	0.23	+0.5
4,016,043	+		EFB2_03833	0.23	-0.8
4,016,043	+		EFB2_03833	0.23	+0.3
4,016,043	+		EFB2_03833	0.23	-1.3
4,016,043	+		EFB2_03833	0.23	+0.3
4,016,044	-		EFB2_03833	0.23	-2.3
4,016,044	-		EFB2_03833	0.23	+0.5
4,016,044	-		EFB2_03833	0.23	-0.6
4,016,044	-		EFB2_03833	0.23	+1.8
4,016,044	-		EFB2_03833	0.23	-2.8
4,016,044	-		EFB2_03833	0.23	-0.5
4,016,044	-		EFB2_03833	0.23	+0.4
4,016,044	-		EFB2_03833	0.23	-1.7
4,016,044	-		EFB2_03833	0.23	-1.1
4,016,049	+		EFB2_03833	0.24	-0.4
4,016,049	+		EFB2_03833	0.24	-0.1
4,016,050	-		EFB2_03833	0.24	+0.2
4,016,050	-		EFB2_03833	0.24	+2.2
4,016,050	-		EFB2_03833	0.24	+0.6
4,016,053	+		EFB2_03833	0.25	+0.1
4,016,054	-		EFB2_03833	0.25	+1.0
4,016,058	+		EFB2_03833	0.25	+0.4
4,016,059	-		EFB2_03833	0.25	+0.1
4,016,059	-		EFB2_03833	0.25	-1.0
4,016,065	+		EFB2_03833	0.26	+0.4
4,016,065	+		EFB2_03833	0.26	-0.0
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4,017,572	-				-0.8
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4,017,583	-				-0.4
4,017,583	-				-0.4
4,017,583	-				-3.3
4,017,583	-				+0.8
4,017,608	+				-0.3
4,017,608	+				-0.7
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4,017,609	-				-2.8
4,017,609	-				+1.8
4,017,609	-				-0.6
4,017,609	-				-1.7
4,017,609	-				-0.1
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4,017,611	-				+2.8
4,017,611	-				-2.0
4,017,611	-				-1.0
4,017,611	-				+0.3
4,017,617	-				+0.1
4,017,617	-				+0.7
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4,017,620	+				+0.9
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4,017,621	-				-2.6
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4,017,621	-				-2.0
4,017,621	-				-0.9
4,017,621	-				+0.6
4,017,621	-				+1.3
4,017,621	-				-1.8
4,017,621	-				+2.5
4,017,621	-				+0.7
4,017,633	-				-2.4