Strain Fitness in Escherichia fergusonii Becca around EFB2_03716

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,888,922	+		EFB2_03715	0.37	-1.9
3,888,922	+		EFB2_03715	0.37	+0.9
3,888,928	+		EFB2_03715	0.38	-1.0
3,888,928	+		EFB2_03715	0.38	+1.5
3,888,928	+		EFB2_03715	0.38	+1.2
3,888,928	+		EFB2_03715	0.38	-1.8
3,888,928	+		EFB2_03715	0.38	+1.2
3,888,928	+		EFB2_03715	0.38	+0.9
3,888,928	+		EFB2_03715	0.38	+0.1
3,888,928	+		EFB2_03715	0.38	-1.9
3,888,928	+		EFB2_03715	0.38	+0.7
3,888,928	+		EFB2_03715	0.38	-0.3
3,888,928	+		EFB2_03715	0.38	-2.5
3,888,929	-		EFB2_03715	0.38	-1.1
3,888,929	-		EFB2_03715	0.38	-2.3
3,888,929	-		EFB2_03715	0.38	+1.4
3,888,929	-		EFB2_03715	0.38	+1.4
3,888,929	-		EFB2_03715	0.38	-1.4
3,888,929	-		EFB2_03715	0.38	-2.1
3,888,929	-		EFB2_03715	0.38	+0.7
3,888,929	-		EFB2_03715	0.38	+0.8
3,888,929	-		EFB2_03715	0.38	+2.0
3,888,929	-		EFB2_03715	0.38	-2.4
3,888,929	-		EFB2_03715	0.38	+0.6
3,888,929	-		EFB2_03715	0.38	-0.2
3,889,010	+		EFB2_03715	0.43	-2.2
3,889,010	+		EFB2_03715	0.43	+0.2
3,889,132	+		EFB2_03715	0.51	+1.1
3,889,132	+		EFB2_03715	0.51	+0.9
3,889,132	+		EFB2_03715	0.51	-2.4
3,889,132	+		EFB2_03715	0.51	+1.5
3,889,132	+		EFB2_03715	0.51	+0.6
3,889,132	+		EFB2_03715	0.51	-1.1
3,889,132	+		EFB2_03715	0.51	-3.4
3,889,132	+		EFB2_03715	0.51	-0.1
3,889,132	+		EFB2_03715	0.51	-0.3
3,889,132	+		EFB2_03715	0.51	-2.4
3,889,132	+		EFB2_03715	0.51	-2.0
3,889,132	+		EFB2_03715	0.51	+1.2
3,889,132	+		EFB2_03715	0.51	-3.0
3,889,132	+		EFB2_03715	0.51	+4.2
3,889,132	+		EFB2_03715	0.51	+0.6
3,889,133	-		EFB2_03715	0.51	+0.5
3,889,133	-		EFB2_03715	0.51	-2.6
3,889,133	-		EFB2_03715	0.51	-2.3
3,889,133	-		EFB2_03715	0.51	+1.7
3,889,133	-		EFB2_03715	0.51	+1.0
3,889,133	-		EFB2_03715	0.51	-0.6
3,889,133	-		EFB2_03715	0.51	-0.7
3,889,133	-		EFB2_03715	0.51	+0.9
3,889,133	-		EFB2_03715	0.51	-1.4
3,889,133	-		EFB2_03715	0.51	-0.4
3,889,133	-		EFB2_03715	0.51	+0.1
3,889,133	-		EFB2_03715	0.51	+1.1
3,889,315	+		EFB2_03715	0.63	+0.1
3,889,315	+		EFB2_03715	0.63	-1.7
3,889,370	-		EFB2_03715	0.66	+0.6
3,889,370	-		EFB2_03715	0.66	+0.7
3,889,552	+		EFB2_03715	0.78	+0.4
3,889,552	+		EFB2_03715	0.78	+2.3
3,889,552	+		EFB2_03715	0.78	-0.6
3,889,552	+		EFB2_03715	0.78	+1.0
3,889,553	-		EFB2_03715	0.78	-1.1
3,889,553	-		EFB2_03715	0.78	+0.8
3,889,553	-		EFB2_03715	0.78	-0.7
3,889,553	-		EFB2_03715	0.78	+0.8
3,889,564	+		EFB2_03715	0.79	-1.9
3,889,585	+		EFB2_03715	0.80	+0.6
3,889,586	-		EFB2_03715	0.80	-0.3
3,889,586	-		EFB2_03715	0.80	-0.4
3,889,586	-		EFB2_03715	0.80	+0.3
3,889,586	-		EFB2_03715	0.80	-0.2
3,889,681	+		EFB2_03715	0.86	+0.8
3,889,682	-		EFB2_03715	0.86	-1.1
3,889,682	-		EFB2_03715	0.86	-0.1
3,889,682	-		EFB2_03715	0.86	+0.4
3,889,682	-		EFB2_03715	0.86	-0.1
3,889,745	+				-0.2
3,889,746	-				-3.4
3,889,746	-				+1.4
3,889,816	+				+0.2
3,889,816	+				-3.1
3,889,834	+				-0.1
3,889,834	+				+0.6
3,889,834	+				+0.4
3,889,835	-				+0.4
3,889,835	-				+0.7
3,889,835	-				+0.1
3,889,835	-				+1.1
3,889,860	+				+0.8
3,889,860	+				+0.6
3,889,860	+				+0.0
3,889,860	+				-1.8
3,889,860	+				+0.9
3,889,861	-				+0.1
3,889,861	-				+1.4
3,889,861	-				-0.3
3,889,861	-				-3.0
3,889,861	-				-1.1
3,889,861	-				+5.5
3,889,865	-				+0.7
3,889,865	-				+1.1
3,889,865	-				+0.2
3,889,873	+				+1.5
3,889,880	+				-3.4
3,889,881	-				-0.5
3,889,885	+				+0.4
3,889,886	-				-1.9
3,889,894	+				-0.0
3,889,894	+				-1.3
3,889,894	+				+0.7
3,889,895	-				-0.1
3,889,895	-				-1.2
3,889,895	-				-0.8
3,889,895	-				-0.1
3,889,895	-				-0.1
3,889,895	-				-0.3
3,889,906	+				-1.5
3,889,906	+				-0.6
3,889,907	-				-0.7
3,889,907	-				+0.1
3,889,907	-				-1.0
3,889,973	+		EFB2_03716	0.10	-3.4
3,889,973	+		EFB2_03716	0.10	-2.7
3,889,973	+		EFB2_03716	0.10	-1.4
3,889,973	+		EFB2_03716	0.10	+1.3
3,889,974	-		EFB2_03716	0.10	+0.5
3,889,974	-		EFB2_03716	0.10	+0.6
3,889,974	-		EFB2_03716	0.10	+2.4
3,890,020	+		EFB2_03716	0.16	+0.4
3,890,024	+		EFB2_03716	0.16	-1.7
3,890,025	-		EFB2_03716	0.16	+0.9
3,890,025	-		EFB2_03716	0.16	-2.8
3,890,070	+		EFB2_03716	0.22	-0.1
3,890,070	+		EFB2_03716	0.22	-3.2
3,890,097	+		EFB2_03716	0.25	+0.9
3,890,098	-		EFB2_03716	0.25	+0.7
3,890,098	-		EFB2_03716	0.25	-0.8
3,890,098	-		EFB2_03716	0.25	+0.2
3,890,109	-		EFB2_03716	0.26	+0.4
3,890,109	-		EFB2_03716	0.26	-1.5
3,890,137	+		EFB2_03716	0.29	+1.2
3,890,207	-		EFB2_03716	0.37	+2.0
3,890,250	-		EFB2_03716	0.42	+0.2
3,890,315	+		EFB2_03716	0.50	-1.7
3,890,315	+		EFB2_03716	0.50	-1.0
3,890,315	+		EFB2_03716	0.50	-0.2
3,890,316	-		EFB2_03716	0.50	-0.6
3,890,319	+		EFB2_03716	0.50	-3.3
3,890,320	-		EFB2_03716	0.50	-0.3
3,890,332	-		EFB2_03716	0.52	-1.8
3,890,341	+		EFB2_03716	0.53	+0.3
3,890,342	-		EFB2_03716	0.53	-0.9
3,890,342	-		EFB2_03716	0.53	-0.4
3,890,366	+		EFB2_03716	0.56	+1.1
3,890,402	+		EFB2_03716	0.60	-0.7
3,890,402	+		EFB2_03716	0.60	-1.7
3,890,402	+		EFB2_03716	0.60	-0.4
3,890,403	-		EFB2_03716	0.60	-0.5
3,890,496	+		EFB2_03716	0.71	+0.0
3,890,496	+		EFB2_03716	0.71	-0.9
3,890,496	+		EFB2_03716	0.71	+0.3
3,890,496	+		EFB2_03716	0.71	-0.0
3,890,496	+		EFB2_03716	0.71	+0.5
3,890,496	+		EFB2_03716	0.71	-3.0
3,890,496	+		EFB2_03716	0.71	+1.0
3,890,496	+		EFB2_03716	0.71	-0.4
3,890,496	+		EFB2_03716	0.71	+0.3
3,890,496	+		EFB2_03716	0.71	-1.6
3,890,497	-		EFB2_03716	0.71	-0.6
3,890,497	-		EFB2_03716	0.71	-1.1
3,890,497	-		EFB2_03716	0.71	+2.2
3,890,497	-		EFB2_03716	0.71	-0.5
3,890,497	-		EFB2_03716	0.71	+0.1
3,890,497	-		EFB2_03716	0.71	-0.5
3,890,497	-		EFB2_03716	0.71	+1.3
3,890,498	+		EFB2_03716	0.71	-0.4
3,890,498	+		EFB2_03716	0.71	-0.4
3,890,498	+		EFB2_03716	0.71	-1.6
3,890,498	+		EFB2_03716	0.71	-0.9
3,890,498	+		EFB2_03716	0.71	+0.5
3,890,498	+		EFB2_03716	0.71	-1.9
3,890,499	-		EFB2_03716	0.71	+0.2
3,890,519	+		EFB2_03716	0.73	+0.4
3,890,546	+		EFB2_03716	0.77	+1.4
3,890,614	+		EFB2_03716	0.84	-2.4
3,890,615	-		EFB2_03716	0.85	-0.4
3,890,615	-		EFB2_03716	0.85	+1.2
3,890,663	+				-2.0
3,890,664	-				-2.5
3,890,667	+				+3.0
3,890,667	+				-0.6
3,890,668	-				+1.2
3,890,668	-				-0.8
3,890,668	-				+0.7
3,890,772	-				+1.2
3,890,788	+				-2.1
3,890,788	+				-0.5
3,890,788	+				-1.7
3,890,788	+				+0.5
3,890,788	+				-0.1
3,890,788	+				+1.4
3,890,788	+				-1.4
3,890,789	-				-2.8
3,890,789	-				-2.9
3,890,870	+		EFB2_03717	0.14	+0.9
3,890,870	+		EFB2_03717	0.14	+0.7
3,890,870	+		EFB2_03717	0.14	-2.2
3,890,871	-		EFB2_03717	0.14	+1.2
3,890,871	-		EFB2_03717	0.14	+0.9
3,890,907	+		EFB2_03717	0.20	+0.8
3,890,907	+		EFB2_03717	0.20	-0.8
3,890,907	+		EFB2_03717	0.20	-0.3
3,890,907	+		EFB2_03717	0.20	-1.8
3,890,907	+		EFB2_03717	0.20	+1.3
3,890,908	-		EFB2_03717	0.20	-0.6
3,890,931	-		EFB2_03717	0.24	+0.3
3,891,030	+		EFB2_03717	0.40	+1.1
3,891,030	+		EFB2_03717	0.40	-0.7
3,891,035	+		EFB2_03717	0.41	+0.7
3,891,035	+		EFB2_03717	0.41	-0.7
3,891,036	-		EFB2_03717	0.41	+0.6
3,891,039	+		EFB2_03717	0.42	+1.3
3,891,039	+		EFB2_03717	0.42	+1.2
3,891,039	+		EFB2_03717	0.42	+1.5
3,891,039	+		EFB2_03717	0.42	+0.6
3,891,039	+		EFB2_03717	0.42	-1.0
3,891,039	+		EFB2_03717	0.42	+0.6
3,891,039	+		EFB2_03717	0.42	-2.5
3,891,039	+		EFB2_03717	0.42	+0.7
3,891,040	-		EFB2_03717	0.42	-2.1
3,891,040	-		EFB2_03717	0.42	+1.7
3,891,040	-		EFB2_03717	0.42	-2.3
3,891,040	-		EFB2_03717	0.42	+0.2
3,891,040	-		EFB2_03717	0.42	-0.8
3,891,040	-		EFB2_03717	0.42	-0.9
3,891,040	-		EFB2_03717	0.42	-1.7
3,891,040	-		EFB2_03717	0.42	-1.5
3,891,040	-		EFB2_03717	0.42	-1.8
3,891,040	-		EFB2_03717	0.42	+0.2
3,891,040	-		EFB2_03717	0.42	+0.9
3,891,040	-		EFB2_03717	0.42	-0.9
3,891,040	-		EFB2_03717	0.42	+0.0
3,891,099	-		EFB2_03717	0.51	+1.6
3,891,111	-		EFB2_03717	0.53	+0.5
3,891,123	-		EFB2_03717	0.55	-0.7
3,891,129	+		EFB2_03717	0.56	-0.9
3,891,129	+		EFB2_03717	0.56	+2.5
3,891,132	+		EFB2_03717	0.57	-0.9
3,891,133	-		EFB2_03717	0.57	-0.7
3,891,182	+		EFB2_03717	0.65	-1.0
3,891,183	-		EFB2_03717	0.65	+0.3
3,891,194	+		EFB2_03717	0.67	-2.3
3,891,194	+		EFB2_03717	0.67	-1.6
3,891,197	+		EFB2_03717	0.68	-0.9
3,891,238	+		EFB2_03717	0.74	+0.4
3,891,239	-		EFB2_03717	0.75	+0.9
3,891,249	+		EFB2_03717	0.76	-1.5
3,891,249	+		EFB2_03717	0.76	-2.5
3,891,250	-		EFB2_03717	0.76	-0.5
3,891,296	+		EFB2_03717	0.84	-0.6
3,891,364	+				+0.3
3,891,364	+				-2.8
3,891,437	+				-1.3
3,891,543	+				+0.7
3,891,543	+				+0.4
3,891,543	+				-0.6
3,891,544	-				+0.6
3,891,544	-				+0.8
3,891,586	+				+0.0
3,891,586	+				+2.5
3,891,586	+				+0.3
3,891,587	-				-0.3
3,891,587	-				+0.8
3,891,587	-				+0.7
3,891,594	+				-0.5
3,891,594	+				-0.8
3,891,594	+				-0.5
3,891,595	-				-0.2
3,891,595	-				+1.1
3,891,596	+				-2.5
3,891,596	+				+2.2
3,891,596	+				-0.2
3,891,596	+				-0.4
3,891,597	-				+0.6
3,891,597	-				-2.3
3,891,609	+				-0.9
3,891,609	+				-0.3
3,891,609	+				+2.6
3,891,609	+				+1.4
3,891,609	+				-0.0
3,891,609	+				+0.4
3,891,609	+				-1.0
3,891,609	+				+0.2
3,891,609	+				+0.3
3,891,609	+				+1.5
3,891,609	+				+0.4
3,891,609	+				+4.2
3,891,609	+				+0.3
3,891,609	+				-0.5
3,891,609	+				+0.7
3,891,609	+				+0.8
3,891,609	+				-1.0
3,891,609	+				-1.1
3,891,609	+				-2.6
3,891,609	+				+1.6
3,891,609	+				+0.4
3,891,609	+				-0.4
3,891,609	+				-1.5
3,891,609	+				-0.1
3,891,609	+				-0.4
3,891,609	+				-0.5
3,891,609	+				-3.3
3,891,609	+				-0.0
3,891,609	+				+0.5
3,891,609	+				+0.4
3,891,609	+				-0.4
3,891,609	+				+0.5
3,891,609	+				-0.9
3,891,609	+				-1.4
3,891,609	+				-1.1
3,891,610	-				-0.9
3,891,610	-				-1.1
3,891,610	-				+0.1
3,891,610	-				+0.2
3,891,610	-				+1.2
3,891,610	-				-0.8
3,891,610	-				+0.5
3,891,610	-				+0.1
3,891,610	-				+1.4
3,891,610	-				-1.0
3,891,610	-				+0.1
3,891,610	-				-0.8
3,891,610	-				-0.7
3,891,610	-				+0.3
3,891,610	-				+0.4
3,891,610	-				-0.6
3,891,610	-				-1.3
3,891,610	-				-1.9
3,891,610	-				+0.4
3,891,610	-				-0.3
3,891,610	-				-0.8
3,891,610	-				-1.3
3,891,610	-				-0.3
3,891,610	-				-0.1
3,891,610	-				+0.6
3,891,610	-				-1.5
3,891,615	+				-1.6
3,891,615	+				+0.7
3,891,616	-				-0.5
3,891,632	+				+1.0
3,891,632	+				+1.1
3,891,685	+				+1.3
3,891,685	+				+0.9
3,891,685	+				-0.8
3,891,708	+		EFB2_03718	0.12	-3.2
3,891,708	+		EFB2_03718	0.12	-0.2
3,891,709	-		EFB2_03718	0.12	-2.9