Strain Fitness in Escherichia fergusonii Becca around EFB2_03715

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,887,437	+		EFB2_03714	0.36	+2.2
3,887,437	+		EFB2_03714	0.36	-1.2
3,887,437	+		EFB2_03714	0.36	-1.1
3,887,471	+		EFB2_03714	0.38	-0.3
3,887,471	+		EFB2_03714	0.38	+0.4
3,887,472	-		EFB2_03714	0.38	-1.1
3,887,472	-		EFB2_03714	0.38	-1.4
3,887,472	-		EFB2_03714	0.38	+0.3
3,887,472	-		EFB2_03714	0.38	+0.5
3,887,472	-		EFB2_03714	0.38	+0.5
3,887,472	-		EFB2_03714	0.38	-2.1
3,887,472	-		EFB2_03714	0.38	-3.6
3,887,472	-		EFB2_03714	0.38	+0.4
3,887,503	+		EFB2_03714	0.40	+1.6
3,887,503	+		EFB2_03714	0.40	+1.0
3,887,503	+		EFB2_03714	0.40	+0.6
3,887,503	+		EFB2_03714	0.40	+0.6
3,887,503	+		EFB2_03714	0.40	+0.4
3,887,504	-		EFB2_03714	0.41	-0.3
3,887,504	-		EFB2_03714	0.41	-0.5
3,887,504	-		EFB2_03714	0.41	+0.1
3,887,504	-		EFB2_03714	0.41	+0.7
3,887,504	-		EFB2_03714	0.41	+0.7
3,887,504	-		EFB2_03714	0.41	-0.5
3,887,554	+		EFB2_03714	0.44	-2.1
3,887,567	+		EFB2_03714	0.45	-1.7
3,887,567	+		EFB2_03714	0.45	+0.5
3,887,568	-		EFB2_03714	0.45	+0.6
3,887,612	+		EFB2_03714	0.48	-2.0
3,887,613	-		EFB2_03714	0.48	+2.5
3,887,639	+		EFB2_03714	0.50	+1.9
3,887,639	+		EFB2_03714	0.50	+2.2
3,887,639	+		EFB2_03714	0.50	+1.3
3,887,639	+		EFB2_03714	0.50	+1.0
3,887,640	-		EFB2_03714	0.50	+0.9
3,887,640	-		EFB2_03714	0.50	-0.6
3,887,640	-		EFB2_03714	0.50	+1.2
3,887,662	-		EFB2_03714	0.52	+0.4
3,887,684	+		EFB2_03714	0.53	-1.0
3,887,807	+		EFB2_03714	0.62	-3.4
3,887,807	+		EFB2_03714	0.62	+0.5
3,887,807	+		EFB2_03714	0.62	+0.3
3,887,807	+		EFB2_03714	0.62	-0.7
3,887,807	+		EFB2_03714	0.62	-3.5
3,887,807	+		EFB2_03714	0.62	+0.3
3,887,807	+		EFB2_03714	0.62	+0.6
3,887,807	+		EFB2_03714	0.62	-1.3
3,887,807	+		EFB2_03714	0.62	-2.5
3,887,807	+		EFB2_03714	0.62	-1.8
3,887,807	+		EFB2_03714	0.62	-1.6
3,887,808	-		EFB2_03714	0.62	-0.8
3,887,808	-		EFB2_03714	0.62	-1.6
3,887,808	-		EFB2_03714	0.62	-1.0
3,887,808	-		EFB2_03714	0.62	-0.9
3,887,808	-		EFB2_03714	0.62	-2.0
3,887,808	-		EFB2_03714	0.62	+1.5
3,887,808	-		EFB2_03714	0.62	-0.4
3,887,809	+		EFB2_03714	0.62	+0.2
3,887,809	+		EFB2_03714	0.62	+0.1
3,887,809	+		EFB2_03714	0.62	-0.2
3,887,809	+		EFB2_03714	0.62	+0.3
3,887,809	+		EFB2_03714	0.62	+1.4
3,887,809	+		EFB2_03714	0.62	-2.9
3,887,810	-		EFB2_03714	0.62	-0.1
3,887,810	-		EFB2_03714	0.62	+1.9
3,887,810	-		EFB2_03714	0.62	-0.0
3,887,810	-		EFB2_03714	0.62	+1.1
3,887,810	-		EFB2_03714	0.62	-0.7
3,887,810	-		EFB2_03714	0.62	-0.2
3,887,810	-		EFB2_03714	0.62	+0.4
3,887,810	-		EFB2_03714	0.62	-0.3
3,887,824	+		EFB2_03714	0.63	+0.9
3,887,824	+		EFB2_03714	0.63	+0.1
3,887,825	-		EFB2_03714	0.63	-1.0
3,887,825	-		EFB2_03714	0.63	+1.8
3,887,825	-		EFB2_03714	0.63	+0.1
3,887,825	-		EFB2_03714	0.63	-2.5
3,887,825	-		EFB2_03714	0.63	+1.0
3,887,849	+		EFB2_03714	0.65	+0.4
3,887,849	+		EFB2_03714	0.65	-0.4
3,887,849	+		EFB2_03714	0.65	-1.6
3,887,849	+		EFB2_03714	0.65	+0.6
3,887,849	+		EFB2_03714	0.65	+1.4
3,887,849	+		EFB2_03714	0.65	-0.7
3,887,849	+		EFB2_03714	0.65	+0.5
3,887,849	+		EFB2_03714	0.65	-0.2
3,887,849	+		EFB2_03714	0.65	-0.3
3,888,087	-		EFB2_03714	0.82	-0.4
3,888,218	+				-1.0
3,888,218	+				-1.0
3,888,218	+				-0.5
3,888,218	+				-1.4
3,888,219	-				+0.1
3,888,219	-				-1.3
3,888,261	+				+0.4
3,888,261	+				+1.8
3,888,261	+				-0.7
3,888,261	+				-0.1
3,888,261	+				+0.4
3,888,261	+				-2.8
3,888,262	-				-0.2
3,888,262	-				+0.2
3,888,262	-				-0.3
3,888,262	-				+0.5
3,888,262	-				+0.5
3,888,262	-				-1.4
3,888,262	-				+0.2
3,888,262	-				-1.7
3,888,262	-				-1.3
3,888,262	-				-3.4
3,888,262	-				-1.1
3,888,262	-				-0.2
3,888,262	-				-0.7
3,888,287	+				+1.4
3,888,309	-				+0.2
3,888,309	-				-1.1
3,888,311	+				-0.7
3,888,311	+				-0.5
3,888,311	+				-1.8
3,888,312	-				+0.8
3,888,312	-				-1.4
3,888,312	-				-0.1
3,888,312	-				+0.6
3,888,312	-				-0.8
3,888,329	+				-0.1
3,888,330	-				-0.7
3,888,370	+				-0.2
3,888,370	+				-0.2
3,888,371	-				+1.8
3,888,455	+				-0.2
3,888,455	+				-1.2
3,888,455	+				-0.4
3,888,455	+				+2.2
3,888,455	+				+2.1
3,888,455	+				-0.8
3,888,455	+				+0.0
3,888,455	+				-0.2
3,888,455	+				-1.3
3,888,455	+				+0.9
3,888,455	+				-1.9
3,888,456	-				+1.8
3,888,456	-				+0.5
3,888,456	-				+1.2
3,888,456	-				-0.8
3,888,456	-				+1.0
3,888,456	-				-1.7
3,888,456	-				-0.6
3,888,456	-				+0.9
3,888,456	-				-1.8
3,888,456	-				+2.0
3,888,489	+				+1.5
3,888,489	+				-0.0
3,888,489	+				-0.3
3,888,489	+				+0.0
3,888,489	+				-0.4
3,888,489	+				-0.1
3,888,489	+				+3.8
3,888,489	+				-1.3
3,888,489	+				-1.0
3,888,489	+				+0.9
3,888,489	+				+0.6
3,888,489	+				-1.4
3,888,490	-				+0.5
3,888,490	-				-0.8
3,888,490	-				-0.2
3,888,490	-				+1.3
3,888,490	-				+0.8
3,888,490	-				-0.1
3,888,658	+		EFB2_03715	0.20	+2.2
3,888,658	+		EFB2_03715	0.20	+0.6
3,888,751	+		EFB2_03715	0.26	+1.2
3,888,751	+		EFB2_03715	0.26	+0.2
3,888,751	+		EFB2_03715	0.26	-3.7
3,888,751	+		EFB2_03715	0.26	-2.1
3,888,752	-		EFB2_03715	0.26	+0.2
3,888,752	-		EFB2_03715	0.26	-0.4
3,888,752	-		EFB2_03715	0.26	+0.5
3,888,784	+		EFB2_03715	0.28	-0.1
3,888,792	+		EFB2_03715	0.29	-2.7
3,888,792	+		EFB2_03715	0.29	-3.2
3,888,792	+		EFB2_03715	0.29	-0.1
3,888,793	-		EFB2_03715	0.29	+0.4
3,888,793	-		EFB2_03715	0.29	+1.9
3,888,793	-		EFB2_03715	0.29	-0.1
3,888,793	-		EFB2_03715	0.29	+1.2
3,888,870	+		EFB2_03715	0.34	-0.1
3,888,870	+		EFB2_03715	0.34	-1.3
3,888,870	+		EFB2_03715	0.34	-1.3
3,888,870	+		EFB2_03715	0.34	-0.5
3,888,871	-		EFB2_03715	0.34	+0.9
3,888,871	-		EFB2_03715	0.34	+0.4
3,888,871	-		EFB2_03715	0.34	+0.4
3,888,871	-		EFB2_03715	0.34	-2.4
3,888,871	-		EFB2_03715	0.34	+1.5
3,888,871	-		EFB2_03715	0.34	-0.3
3,888,871	-		EFB2_03715	0.34	-0.8
3,888,922	+		EFB2_03715	0.37	-1.9
3,888,922	+		EFB2_03715	0.37	+0.9
3,888,928	+		EFB2_03715	0.38	-1.0
3,888,928	+		EFB2_03715	0.38	+1.5
3,888,928	+		EFB2_03715	0.38	+1.2
3,888,928	+		EFB2_03715	0.38	-1.8
3,888,928	+		EFB2_03715	0.38	+1.2
3,888,928	+		EFB2_03715	0.38	+0.9
3,888,928	+		EFB2_03715	0.38	+0.1
3,888,928	+		EFB2_03715	0.38	-1.9
3,888,928	+		EFB2_03715	0.38	+0.7
3,888,928	+		EFB2_03715	0.38	-0.3
3,888,928	+		EFB2_03715	0.38	-2.5
3,888,929	-		EFB2_03715	0.38	-1.1
3,888,929	-		EFB2_03715	0.38	-2.3
3,888,929	-		EFB2_03715	0.38	+1.4
3,888,929	-		EFB2_03715	0.38	+1.4
3,888,929	-		EFB2_03715	0.38	-1.4
3,888,929	-		EFB2_03715	0.38	-2.1
3,888,929	-		EFB2_03715	0.38	+0.7
3,888,929	-		EFB2_03715	0.38	+0.8
3,888,929	-		EFB2_03715	0.38	+2.0
3,888,929	-		EFB2_03715	0.38	-2.4
3,888,929	-		EFB2_03715	0.38	+0.6
3,888,929	-		EFB2_03715	0.38	-0.2
3,889,010	+		EFB2_03715	0.43	-2.2
3,889,010	+		EFB2_03715	0.43	+0.2
3,889,132	+		EFB2_03715	0.51	+1.1
3,889,132	+		EFB2_03715	0.51	+0.9
3,889,132	+		EFB2_03715	0.51	-2.4
3,889,132	+		EFB2_03715	0.51	+1.5
3,889,132	+		EFB2_03715	0.51	+0.6
3,889,132	+		EFB2_03715	0.51	-1.1
3,889,132	+		EFB2_03715	0.51	-3.4
3,889,132	+		EFB2_03715	0.51	-0.1
3,889,132	+		EFB2_03715	0.51	-0.3
3,889,132	+		EFB2_03715	0.51	-2.4
3,889,132	+		EFB2_03715	0.51	-2.0
3,889,132	+		EFB2_03715	0.51	+1.2
3,889,132	+		EFB2_03715	0.51	-3.0
3,889,132	+		EFB2_03715	0.51	+4.2
3,889,132	+		EFB2_03715	0.51	+0.6
3,889,133	-		EFB2_03715	0.51	+0.5
3,889,133	-		EFB2_03715	0.51	-2.6
3,889,133	-		EFB2_03715	0.51	-2.3
3,889,133	-		EFB2_03715	0.51	+1.7
3,889,133	-		EFB2_03715	0.51	+1.0
3,889,133	-		EFB2_03715	0.51	-0.6
3,889,133	-		EFB2_03715	0.51	-0.7
3,889,133	-		EFB2_03715	0.51	+0.9
3,889,133	-		EFB2_03715	0.51	-1.4
3,889,133	-		EFB2_03715	0.51	-0.4
3,889,133	-		EFB2_03715	0.51	+0.1
3,889,133	-		EFB2_03715	0.51	+1.1
3,889,315	+		EFB2_03715	0.63	+0.1
3,889,315	+		EFB2_03715	0.63	-1.7
3,889,370	-		EFB2_03715	0.66	+0.6
3,889,370	-		EFB2_03715	0.66	+0.7
3,889,552	+		EFB2_03715	0.78	+0.4
3,889,552	+		EFB2_03715	0.78	+2.3
3,889,552	+		EFB2_03715	0.78	-0.6
3,889,552	+		EFB2_03715	0.78	+1.0
3,889,553	-		EFB2_03715	0.78	-1.1
3,889,553	-		EFB2_03715	0.78	+0.8
3,889,553	-		EFB2_03715	0.78	-0.7
3,889,553	-		EFB2_03715	0.78	+0.8
3,889,564	+		EFB2_03715	0.79	-1.9
3,889,585	+		EFB2_03715	0.80	+0.6
3,889,586	-		EFB2_03715	0.80	-0.3
3,889,586	-		EFB2_03715	0.80	-0.4
3,889,586	-		EFB2_03715	0.80	+0.3
3,889,586	-		EFB2_03715	0.80	-0.2
3,889,681	+		EFB2_03715	0.86	+0.8
3,889,682	-		EFB2_03715	0.86	-1.1
3,889,682	-		EFB2_03715	0.86	-0.1
3,889,682	-		EFB2_03715	0.86	+0.4
3,889,682	-		EFB2_03715	0.86	-0.1
3,889,745	+				-0.2
3,889,746	-				-3.4
3,889,746	-				+1.4
3,889,816	+				+0.2
3,889,816	+				-3.1
3,889,834	+				-0.1
3,889,834	+				+0.6
3,889,834	+				+0.4
3,889,835	-				+0.4
3,889,835	-				+0.7
3,889,835	-				+0.1
3,889,835	-				+1.1
3,889,860	+				+0.8
3,889,860	+				+0.6
3,889,860	+				+0.0
3,889,860	+				-1.8
3,889,860	+				+0.9
3,889,861	-				+0.1
3,889,861	-				+1.4
3,889,861	-				-0.3
3,889,861	-				-3.0
3,889,861	-				-1.1
3,889,861	-				+5.5
3,889,865	-				+0.7
3,889,865	-				+1.1
3,889,865	-				+0.2
3,889,873	+				+1.5
3,889,880	+				-3.4
3,889,881	-				-0.5
3,889,885	+				+0.4
3,889,886	-				-1.9
3,889,894	+				-0.0
3,889,894	+				-1.3
3,889,894	+				+0.7
3,889,895	-				-0.1
3,889,895	-				-1.2
3,889,895	-				-0.8
3,889,895	-				-0.1
3,889,895	-				-0.1
3,889,895	-				-0.3
3,889,906	+				-1.5
3,889,906	+				-0.6
3,889,907	-				-0.7
3,889,907	-				+0.1
3,889,907	-				-1.0
3,889,973	+		EFB2_03716	0.10	-3.4
3,889,973	+		EFB2_03716	0.10	-2.7
3,889,973	+		EFB2_03716	0.10	-1.4
3,889,973	+		EFB2_03716	0.10	+1.3
3,889,974	-		EFB2_03716	0.10	+0.5
3,889,974	-		EFB2_03716	0.10	+0.6
3,889,974	-		EFB2_03716	0.10	+2.4
3,890,020	+		EFB2_03716	0.16	+0.4
3,890,024	+		EFB2_03716	0.16	-1.7
3,890,025	-		EFB2_03716	0.16	+0.9
3,890,025	-		EFB2_03716	0.16	-2.8
3,890,070	+		EFB2_03716	0.22	-0.1
3,890,070	+		EFB2_03716	0.22	-3.2
3,890,097	+		EFB2_03716	0.25	+0.9
3,890,098	-		EFB2_03716	0.25	+0.7
3,890,098	-		EFB2_03716	0.25	-0.8
3,890,098	-		EFB2_03716	0.25	+0.2
3,890,109	-		EFB2_03716	0.26	+0.4
3,890,109	-		EFB2_03716	0.26	-1.5
3,890,137	+		EFB2_03716	0.29	+1.2
3,890,207	-		EFB2_03716	0.37	+2.0
3,890,250	-		EFB2_03716	0.42	+0.2
3,890,315	+		EFB2_03716	0.50	-1.7
3,890,315	+		EFB2_03716	0.50	-1.0
3,890,315	+		EFB2_03716	0.50	-0.2
3,890,316	-		EFB2_03716	0.50	-0.6
3,890,319	+		EFB2_03716	0.50	-3.3
3,890,320	-		EFB2_03716	0.50	-0.3
3,890,332	-		EFB2_03716	0.52	-1.8
3,890,341	+		EFB2_03716	0.53	+0.3
3,890,342	-		EFB2_03716	0.53	-0.9
3,890,342	-		EFB2_03716	0.53	-0.4
3,890,366	+		EFB2_03716	0.56	+1.1
3,890,402	+		EFB2_03716	0.60	-0.7
3,890,402	+		EFB2_03716	0.60	-1.7
3,890,402	+		EFB2_03716	0.60	-0.4
3,890,403	-		EFB2_03716	0.60	-0.5
3,890,496	+		EFB2_03716	0.71	+0.0
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