Strain Fitness in Escherichia fergusonii Becca around EFB2_03643

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,807,757	-				+1.2
3,807,757	-				-0.5
3,807,760	-				+2.0
3,807,760	-				-2.1
3,808,689	-				-2.7
3,808,719	-				+0.3
3,808,719	-				+0.8
3,808,719	-				-0.1
3,808,722	-				-1.3
3,809,905	-				+0.6
3,809,941	-		EFB2_03644	0.17	-0.1
3,809,943	-		EFB2_03644	0.18	+1.4
3,809,943	-		EFB2_03644	0.18	-0.5
3,809,943	-		EFB2_03644	0.18	+0.2
3,809,943	-		EFB2_03644	0.18	+0.4
3,809,943	-		EFB2_03644	0.18	+1.0
3,809,943	-		EFB2_03644	0.18	+0.4
3,809,943	-		EFB2_03644	0.18	-0.9
3,809,943	-		EFB2_03644	0.18	+0.1
3,809,943	-		EFB2_03644	0.18	-0.1
3,810,041	-		EFB2_03644	0.40	+0.6
3,810,041	-		EFB2_03644	0.40	-0.6
3,810,041	-		EFB2_03644	0.40	-2.0
3,810,041	-		EFB2_03644	0.40	-1.0
3,810,041	-		EFB2_03644	0.40	-1.0
3,810,041	-		EFB2_03644	0.40	-0.7
3,810,041	-		EFB2_03644	0.40	-3.1
3,810,042	+		EFB2_03644	0.40	+0.4
3,810,042	+		EFB2_03644	0.40	-1.4
3,810,043	-		EFB2_03644	0.40	-0.8
3,810,043	-		EFB2_03644	0.40	+0.9
3,810,112	-		EFB2_03644	0.55	-0.8
3,810,116	-		EFB2_03644	0.56	-0.5
3,810,116	-		EFB2_03644	0.56	-1.1
3,810,116	-		EFB2_03644	0.56	-1.8
3,810,116	-		EFB2_03644	0.56	-2.0
3,810,130	-		EFB2_03644	0.59	+0.3
3,810,130	-		EFB2_03644	0.59	-0.3
3,810,158	-		EFB2_03644	0.66	-0.4
3,810,211	-		EFB2_03644	0.77	-1.3
3,810,211	-		EFB2_03644	0.77	-1.4
3,810,211	-		EFB2_03644	0.77	-0.7
3,810,211	-		EFB2_03644	0.77	-2.5
3,810,211	-		EFB2_03644	0.77	+1.0
3,810,275	-				+0.3
3,810,275	-				+2.2
3,810,275	-				-0.3
3,810,275	-				-0.8
3,810,275	-				-0.7
3,810,275	-				-0.3
3,810,275	-				-0.5
3,810,275	-				-0.5
3,810,275	-				+0.2
3,810,275	-				-1.3
3,810,275	-				-2.1
3,810,275	-				-2.7
3,810,280	-				-2.5
3,810,280	-				+0.4
3,810,280	-				-0.1
3,810,280	-				+0.1
3,810,313	-				-2.7
3,810,313	-				+1.0
3,810,335	-				-0.7
3,810,351	-				-1.7
3,810,351	-				-0.1
3,810,366	+				-0.1
3,810,366	+				+0.2
3,810,366	+				-0.6
3,810,367	-				+1.0
3,810,367	-				-0.2
3,810,367	-				-0.4
3,810,367	-				-1.0
3,810,367	-				+0.9
3,810,393	+				-0.7
3,810,394	-				-1.8
3,810,394	-				-0.5
3,810,394	-				+0.2
3,810,419	+				-0.1
3,810,419	+				+0.2
3,810,419	+				+2.0
3,810,419	+				-0.3
3,810,419	+				+0.3
3,810,419	+				+2.2
3,810,419	+				-1.9
3,810,420	-				-0.1
3,810,420	-				-0.2
3,810,420	-				-1.3
3,810,420	-				-2.8
3,810,420	-				-1.3
3,810,426	+				-1.1
3,810,427	-				+0.4
3,810,427	-				+0.5
3,810,432	+				+1.2
3,810,433	-				+0.3
3,810,433	-				-0.2
3,810,433	-				+0.1
3,810,437	+				-1.3
3,810,438	-				-1.7
3,810,438	-				+0.9
3,810,438	-				-2.7
3,810,438	-				+1.5
3,810,462	+				-0.6
3,810,462	+				-1.9
3,810,462	+				-4.1
3,810,462	+				-2.7
3,810,462	+				+0.6
3,810,462	+				-1.1
3,810,462	+				-1.6
3,810,462	+				+1.5
3,810,462	+				-3.0
3,810,462	+				-1.3
3,810,462	+				-0.9
3,810,463	-				-1.4
3,810,463	-				-0.6
3,810,463	-				-0.8
3,810,463	-				+0.2
3,810,463	-				+0.8
3,810,463	-				-0.5
3,810,463	-				-0.1
3,810,468	+				+0.7
3,810,468	+				+0.7
3,810,468	+				-0.5
3,810,468	+				-0.1
3,810,468	+				+1.7
3,810,468	+				+0.6
3,810,469	-				-0.7
3,810,469	-				-0.7
3,810,469	-				-0.8
3,810,469	-				+0.2
3,810,469	-				+1.1
3,810,469	-				+1.0
3,810,471	+				-0.9
3,810,655	+		EFB2_03645	0.36	-1.4
3,810,655	+		EFB2_03645	0.36	+1.2
3,810,656	-		EFB2_03645	0.36	-0.0
3,810,656	-		EFB2_03645	0.36	+0.0
3,810,656	-		EFB2_03645	0.36	+1.9
3,810,656	-		EFB2_03645	0.36	-2.3
3,810,705	+		EFB2_03645	0.45	+0.0
3,810,705	+		EFB2_03645	0.45	+0.1
3,810,705	+		EFB2_03645	0.45	+0.8
3,810,706	-		EFB2_03645	0.45	-0.1
3,810,710	+		EFB2_03645	0.46	+0.5
3,810,710	+		EFB2_03645	0.46	+0.8
3,810,710	+		EFB2_03645	0.46	-0.5
3,810,710	+		EFB2_03645	0.46	+0.8
3,810,710	+		EFB2_03645	0.46	-1.9
3,810,710	+		EFB2_03645	0.46	-0.6
3,810,710	+		EFB2_03645	0.46	+0.0
3,810,710	+		EFB2_03645	0.46	+0.8
3,810,710	+		EFB2_03645	0.46	+1.8
3,810,710	+		EFB2_03645	0.46	-2.5
3,810,710	+		EFB2_03645	0.46	+0.4
3,810,710	+		EFB2_03645	0.46	+1.0
3,810,710	+		EFB2_03645	0.46	+0.3
3,810,710	+		EFB2_03645	0.46	+1.4
3,810,710	+		EFB2_03645	0.46	-2.5
3,810,710	+		EFB2_03645	0.46	+0.3
3,810,710	+		EFB2_03645	0.46	+1.0
3,810,710	+		EFB2_03645	0.46	+0.6
3,810,710	+		EFB2_03645	0.46	+0.0
3,810,710	+		EFB2_03645	0.46	+1.2
3,810,710	+		EFB2_03645	0.46	+0.3
3,810,711	-		EFB2_03645	0.46	+0.4
3,810,711	-		EFB2_03645	0.46	-0.2
3,810,711	-		EFB2_03645	0.46	-0.5
3,810,711	-		EFB2_03645	0.46	+2.3
3,810,711	-		EFB2_03645	0.46	-0.1
3,810,711	-		EFB2_03645	0.46	-1.0
3,810,711	-		EFB2_03645	0.46	+0.6
3,810,711	-		EFB2_03645	0.46	+0.7
3,810,711	-		EFB2_03645	0.46	+0.3
3,810,711	-		EFB2_03645	0.46	-0.8
3,810,711	-		EFB2_03645	0.46	-0.1
3,810,711	-		EFB2_03645	0.46	-0.4
3,810,711	-		EFB2_03645	0.46	+0.6
3,810,711	-		EFB2_03645	0.46	+0.5
3,810,711	-		EFB2_03645	0.46	+0.2
3,810,714	+		EFB2_03645	0.46	+0.0
3,810,714	+		EFB2_03645	0.46	-1.1
3,810,714	+		EFB2_03645	0.46	+0.5
3,810,714	+		EFB2_03645	0.46	-1.0
3,810,714	+		EFB2_03645	0.46	+0.6
3,810,714	+		EFB2_03645	0.46	+0.0
3,810,714	+		EFB2_03645	0.46	+2.8
3,810,714	+		EFB2_03645	0.46	-2.0
3,810,714	+		EFB2_03645	0.46	-0.5
3,810,714	+		EFB2_03645	0.46	+0.1
3,810,714	+		EFB2_03645	0.46	+0.0
3,810,714	+		EFB2_03645	0.46	-1.4
3,810,714	+		EFB2_03645	0.46	+0.3
3,810,714	+		EFB2_03645	0.46	-0.7
3,810,715	-		EFB2_03645	0.47	-0.6
3,810,715	-		EFB2_03645	0.47	-0.6
3,810,715	-		EFB2_03645	0.47	-0.3
3,810,715	-		EFB2_03645	0.47	-0.8
3,810,715	-		EFB2_03645	0.47	-0.2
3,810,715	-		EFB2_03645	0.47	+0.9
3,810,715	-		EFB2_03645	0.47	+0.5
3,810,715	-		EFB2_03645	0.47	+0.9
3,810,715	-		EFB2_03645	0.47	+1.2
3,810,715	-		EFB2_03645	0.47	+0.5
3,810,715	-		EFB2_03645	0.47	+0.2
3,810,715	-		EFB2_03645	0.47	+0.3
3,810,729	+		EFB2_03645	0.49	-1.4
3,810,729	+		EFB2_03645	0.49	+2.6
3,810,729	+		EFB2_03645	0.49	+0.8
3,810,729	+		EFB2_03645	0.49	+2.2
3,810,729	+		EFB2_03645	0.49	+0.4
3,810,730	-		EFB2_03645	0.49	+0.3
3,810,732	+		EFB2_03645	0.50	-1.0
3,810,732	+		EFB2_03645	0.50	-0.4
3,810,732	+		EFB2_03645	0.50	-0.8
3,810,733	-		EFB2_03645	0.50	+0.7
3,810,733	-		EFB2_03645	0.50	+2.2
3,810,733	-		EFB2_03645	0.50	-1.9
3,810,733	-		EFB2_03645	0.50	-0.3
3,810,733	-		EFB2_03645	0.50	-1.8
3,810,733	-		EFB2_03645	0.50	+1.3
3,810,741	+		EFB2_03645	0.51	-0.4
3,810,741	+		EFB2_03645	0.51	+2.2
3,810,764	+		EFB2_03645	0.56	-2.5
3,810,764	+		EFB2_03645	0.56	-0.0
3,810,764	+		EFB2_03645	0.56	+1.0
3,810,765	-		EFB2_03645	0.56	-0.4
3,810,765	-		EFB2_03645	0.56	-2.8
3,810,765	-		EFB2_03645	0.56	+1.1
3,810,765	-		EFB2_03645	0.56	+0.8
3,810,768	+		EFB2_03645	0.56	-0.0
3,810,768	+		EFB2_03645	0.56	-0.0
3,810,768	+		EFB2_03645	0.56	+3.8
3,810,768	+		EFB2_03645	0.56	-0.5
3,810,768	+		EFB2_03645	0.56	+1.3
3,810,768	+		EFB2_03645	0.56	-0.1
3,810,769	-		EFB2_03645	0.57	+2.3
3,810,769	-		EFB2_03645	0.57	-0.1
3,810,769	-		EFB2_03645	0.57	+0.6
3,810,820	+		EFB2_03645	0.66	+2.1