Strain Fitness in Escherichia fergusonii Becca around EFB2_03487

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,635,465	+				-0.0
3,635,466	-				-1.4
3,635,466	-				+1.3
3,635,483	-				+1.0
3,635,483	-				+1.0
3,635,483	-				-2.2
3,635,483	-				+0.4
3,635,483	-				-0.5
3,635,498	+				-2.3
3,635,499	-				+0.9
3,635,499	-				+0.1
3,635,499	-				+0.3
3,635,501	+				-0.5
3,635,532	-				+0.8
3,635,532	-				+0.7
3,635,583	-		EFB2_03486	0.11	+1.1
3,635,583	-		EFB2_03486	0.11	+0.0
3,635,614	-		EFB2_03486	0.16	-1.6
3,635,614	-		EFB2_03486	0.16	+1.5
3,635,614	-		EFB2_03486	0.16	-0.4
3,635,614	-		EFB2_03486	0.16	-0.0
3,635,614	-		EFB2_03486	0.16	+0.0
3,635,614	-		EFB2_03486	0.16	-0.7
3,635,614	-		EFB2_03486	0.16	-1.0
3,635,614	-		EFB2_03486	0.16	+0.7
3,635,614	-		EFB2_03486	0.16	-1.9
3,635,614	-		EFB2_03486	0.16	-0.4
3,635,614	-		EFB2_03486	0.16	-0.8
3,635,614	-		EFB2_03486	0.16	+1.0
3,635,614	-		EFB2_03486	0.16	-1.1
3,635,614	-		EFB2_03486	0.16	+1.4
3,635,614	-		EFB2_03486	0.16	-1.6
3,635,614	-		EFB2_03486	0.16	-0.7
3,635,614	-		EFB2_03486	0.16	-4.1
3,635,614	-		EFB2_03486	0.16	+1.7
3,635,614	-		EFB2_03486	0.16	+0.2
3,635,614	-		EFB2_03486	0.16	-2.3
3,635,614	-		EFB2_03486	0.16	-2.7
3,635,614	-		EFB2_03486	0.16	+1.3
3,635,614	-		EFB2_03486	0.16	+1.9
3,635,618	-		EFB2_03486	0.17	+1.4
3,635,618	-		EFB2_03486	0.17	-0.2
3,635,618	-		EFB2_03486	0.17	+1.5
3,635,618	-		EFB2_03486	0.17	+0.1
3,635,618	-		EFB2_03486	0.17	+1.0
3,635,618	-		EFB2_03486	0.17	+0.7
3,635,618	-		EFB2_03486	0.17	-2.6
3,635,618	-		EFB2_03486	0.17	+0.3
3,635,618	-		EFB2_03486	0.17	+1.0
3,635,618	-		EFB2_03486	0.17	-1.9
3,635,618	-		EFB2_03486	0.17	+3.7
3,635,637	-		EFB2_03486	0.20	+0.0
3,635,679	-		EFB2_03486	0.28	-0.9
3,635,769	-		EFB2_03486	0.44	-1.6
3,635,807	-		EFB2_03486	0.50	-0.2
3,635,807	-		EFB2_03486	0.50	+0.2
3,635,807	-		EFB2_03486	0.50	-0.7
3,635,807	-		EFB2_03486	0.50	+1.4
3,635,807	-		EFB2_03486	0.50	-0.4
3,635,807	-		EFB2_03486	0.50	-1.0
3,635,807	-		EFB2_03486	0.50	-0.1
3,635,807	-		EFB2_03486	0.50	+1.4
3,635,871	-		EFB2_03486	0.62	-0.7
3,635,874	+		EFB2_03486	0.62	+1.2
3,635,875	-		EFB2_03486	0.62	+0.0
3,635,875	-		EFB2_03486	0.62	-3.3
3,635,875	-		EFB2_03486	0.62	-0.4
3,635,882	-		EFB2_03486	0.64	+0.7
3,635,882	-		EFB2_03486	0.64	-1.6
3,635,882	-		EFB2_03486	0.64	-0.6
3,635,882	-		EFB2_03486	0.64	-0.7
3,635,882	-		EFB2_03486	0.64	+1.2
3,635,882	-		EFB2_03486	0.64	-0.3
3,635,882	-		EFB2_03486	0.64	-3.4
3,635,882	-		EFB2_03486	0.64	+2.8
3,635,882	-		EFB2_03486	0.64	-0.1
3,635,882	-		EFB2_03486	0.64	-1.0
3,635,884	-		EFB2_03486	0.64	-1.3
3,635,884	-		EFB2_03486	0.64	+0.8
3,635,884	-		EFB2_03486	0.64	-3.1
3,635,884	-		EFB2_03486	0.64	-0.2
3,635,884	-		EFB2_03486	0.64	-1.2
3,635,884	-		EFB2_03486	0.64	-3.6
3,635,884	-		EFB2_03486	0.64	+0.6
3,635,884	-		EFB2_03486	0.64	-0.9
3,635,884	-		EFB2_03486	0.64	-2.1
3,635,884	-		EFB2_03486	0.64	-0.7
3,635,884	-		EFB2_03486	0.64	+1.0
3,635,884	-		EFB2_03486	0.64	-0.4
3,635,884	-		EFB2_03486	0.64	-1.7
3,635,884	-		EFB2_03486	0.64	+1.8
3,635,884	-		EFB2_03486	0.64	+0.1
3,635,884	-		EFB2_03486	0.64	+0.1
3,635,884	-		EFB2_03486	0.64	-1.2
3,635,884	-		EFB2_03486	0.64	+0.1
3,635,884	-		EFB2_03486	0.64	+0.6
3,635,884	-		EFB2_03486	0.64	-1.1
3,635,884	-		EFB2_03486	0.64	-1.7
3,635,884	-		EFB2_03486	0.64	+0.2
3,635,884	-		EFB2_03486	0.64	-1.0
3,635,915	-		EFB2_03486	0.70	+0.9
3,635,915	-		EFB2_03486	0.70	+0.4
3,635,958	-		EFB2_03486	0.77	-0.4
3,635,972	-		EFB2_03486	0.80	+2.0
3,636,089	-				-3.6
3,636,089	-				+0.7
3,636,089	-				-0.0
3,636,089	-				+1.0
3,636,089	-				-1.5
3,636,089	-				-0.4
3,636,089	-				+0.3
3,636,089	-				-2.0
3,636,089	-				-1.6
3,636,089	-				+0.0
3,636,089	-				+0.5
3,636,089	-				-0.1
3,636,089	-				+0.8
3,636,089	-				+0.3
3,636,089	-				+0.2
3,636,089	-				+0.1
3,636,089	-				+1.9
3,636,089	-				-2.5
3,636,089	-				+0.3
3,636,091	-				+0.2
3,636,091	-				-1.8
3,636,091	-				+0.7
3,636,091	-				+1.5
3,636,091	-				+3.7
3,636,091	-				-0.4
3,636,091	-				+0.3
3,636,117	+				-0.9
3,636,117	+				-1.4
3,636,117	+				+2.1
3,636,117	+				-2.0
3,636,117	+				+0.1
3,636,117	+				+0.6
3,636,117	+				+2.5
3,636,117	+				+0.9
3,636,117	+				+0.1
3,636,117	+				+0.3
3,636,117	+				+1.1
3,636,117	+				+0.1
3,636,117	+				-2.4
3,636,117	+				-1.0
3,636,117	+				-1.1
3,636,117	+				-0.2
3,636,117	+				+0.7
3,636,117	+				-1.8
3,636,117	+				+1.7
3,636,117	+				+0.1
3,636,117	+				-2.4
3,636,117	+				+0.1
3,636,117	+				+2.8
3,636,117	+				+1.1
3,636,117	+				+0.5
3,636,117	+				+0.6
3,636,118	-				+1.1
3,636,118	-				+0.0
3,636,118	-				-2.2
3,636,118	-				+0.0
3,636,118	-				+0.3
3,636,118	-				-0.1
3,636,118	-				+1.7
3,636,118	-				-0.0
3,636,118	-				+0.0
3,636,118	-				+1.3
3,636,118	-				-1.9
3,636,118	-				+0.5
3,636,118	-				+1.8
3,636,118	-				+0.4
3,636,118	-				+0.3
3,636,118	-				+0.6
3,636,118	-				-0.4
3,636,118	-				+0.6
3,636,118	-				+0.6
3,636,118	-				-2.3
3,636,118	-				-0.6
3,636,118	-				+1.6
3,636,118	-				+2.0
3,636,118	-				+2.2
3,636,118	-				-0.2
3,636,118	-				+1.3
3,636,118	-				-2.2
3,636,118	-				-1.2
3,636,118	-				-0.7
3,636,118	-				+2.1
3,636,177	+				-0.7
3,636,178	-				+0.2
3,636,182	+				+2.3
3,636,182	+				-2.5
3,636,182	+				-2.2
3,636,182	+				+3.5
3,636,182	+				-1.4
3,636,182	+				+0.1
3,636,182	+				-0.9
3,636,182	+				+1.2
3,636,183	-				+0.2
3,636,183	-				-1.0
3,636,183	-				-1.6
3,636,183	-				+1.1
3,636,183	-				+0.0
3,636,183	-				-2.2
3,636,183	-				+1.8
3,636,183	-				-0.1
3,636,183	-				+0.7
3,636,183	-				+0.0
3,636,183	-				-2.8
3,636,183	-				-0.4
3,636,193	+				-0.5
3,636,193	+				-0.4
3,636,194	-				-0.9
3,636,231	-				-1.1
3,636,237	+				+1.2
3,636,266	+				-1.9
3,636,266	+				-1.6
3,636,267	-				-1.2
3,636,276	+				+1.0
3,636,276	+				+1.5
3,636,276	+				-2.8
3,636,276	+				-1.9
3,636,276	+				+0.9
3,636,276	+				-1.2
3,636,277	-				-2.5
3,636,286	+				-1.7
3,636,286	+				+1.1
3,636,286	+				-1.6
3,636,287	-				+2.0
3,636,324	+				+1.1
3,636,324	+				-0.8
3,636,325	-				-0.8
3,636,325	-				+0.3
3,636,325	-				-0.2
3,636,348	+				-0.9
3,636,348	+				+0.4
3,636,348	+				+1.2
3,636,348	+				+0.4
3,636,348	+				+0.4
3,636,348	+				-1.1
3,636,349	-				+0.3
3,636,349	-				-1.9
3,636,349	-				-0.4
3,636,349	-				-2.2
3,636,349	-				+0.2
3,636,349	-				-2.2
3,636,349	-				+0.9
3,636,349	-				-0.9
3,636,349	-				+0.9
3,636,361	+				+0.7
3,636,362	-				+0.1
3,636,362	-				+0.6
3,636,362	-				-0.2
3,636,385	+				-0.3
3,636,385	+				-0.2
3,636,385	+				-1.3
3,636,385	+				+0.8
3,636,385	+				-1.2
3,636,385	+				-0.1
3,636,385	+				-0.6
3,636,385	+				+0.2
3,636,385	+				-1.0
3,636,386	-				+0.1
3,636,386	-				-2.8
3,636,386	-				-2.4
3,636,386	-				-0.0
3,636,386	-				+0.3
3,636,386	-				-0.7
3,636,386	-				-0.4
3,636,386	-				-0.9
3,636,386	-				-2.6
3,636,386	-				+0.9
3,636,386	-				-1.6
3,636,393	+				-0.3
3,636,393	+				+0.6
3,636,393	+				-0.7
3,636,393	+				+1.3
3,636,393	+				+2.3
3,636,393	+				-0.4
3,636,393	+				-1.7
3,636,393	+				-1.6
3,636,393	+				+1.1
3,636,394	-				-0.1
3,636,394	-				+0.9
3,636,394	-				+0.3
3,636,394	-				+1.4
3,636,394	-				+1.9
3,636,394	-				-0.4
3,636,394	-				-3.0
3,636,397	+				+0.8
3,636,397	+				-0.3
3,636,397	+				-2.3
3,636,397	+				+0.9
3,636,397	+				-0.2
3,636,398	-				-0.6
3,636,398	-				-0.6
3,636,398	-				-0.5
3,636,398	-				-1.3
3,636,408	+				+1.6
3,636,408	+				+0.7
3,636,408	+				+1.7
3,636,409	-				+2.3
3,636,409	-				-2.8
3,636,409	-				-1.8
3,636,409	-				+0.6
3,636,413	+				-0.7
3,636,414	-				-1.8
3,636,422	+				-2.0
3,636,456	+				-2.2
3,636,456	+				-0.9
3,636,456	+				+1.4
3,636,457	-				-2.0
3,636,477	+				-0.5
3,636,478	-				-0.3
3,636,553	+		EFB2_03487	0.13	-1.2
3,636,553	+		EFB2_03487	0.13	+2.1
3,636,553	+		EFB2_03487	0.13	+0.0
3,636,553	+		EFB2_03487	0.13	+1.4
3,636,554	-		EFB2_03487	0.13	-0.2
3,636,554	-		EFB2_03487	0.13	-2.4
3,636,554	-		EFB2_03487	0.13	-1.2
3,636,596	+		EFB2_03487	0.18	-0.6
3,636,597	-		EFB2_03487	0.19	-2.7
3,636,597	-		EFB2_03487	0.19	-1.9
3,636,597	-		EFB2_03487	0.19	-0.7
3,636,605	-		EFB2_03487	0.20	+1.6
3,636,608	+		EFB2_03487	0.20	+0.2
3,636,609	-		EFB2_03487	0.20	+1.6
3,636,632	+		EFB2_03487	0.23	+2.7
3,636,632	+		EFB2_03487	0.23	-1.0
3,636,632	+		EFB2_03487	0.23	-1.7
3,636,632	+		EFB2_03487	0.23	-0.4
3,636,632	+		EFB2_03487	0.23	-1.7
3,636,632	+		EFB2_03487	0.23	-2.2
3,636,633	-		EFB2_03487	0.23	+3.1
3,636,633	-		EFB2_03487	0.23	+0.7
3,636,633	-		EFB2_03487	0.23	-1.7
3,636,633	-		EFB2_03487	0.23	+0.2
3,636,633	-		EFB2_03487	0.23	+1.0
3,636,633	-		EFB2_03487	0.23	-0.2
3,636,633	-		EFB2_03487	0.23	-1.3
3,636,633	-		EFB2_03487	0.23	+0.8
3,636,633	-		EFB2_03487	0.23	-0.2
3,636,649	+		EFB2_03487	0.26	+0.2
3,636,649	+		EFB2_03487	0.26	-1.3
3,636,650	-		EFB2_03487	0.26	+0.2
3,636,650	-		EFB2_03487	0.26	+0.2
3,636,650	-		EFB2_03487	0.26	+0.2
3,636,650	-		EFB2_03487	0.26	+0.1
3,636,650	-		EFB2_03487	0.26	+1.4
3,636,658	+		EFB2_03487	0.27	+0.3
3,636,658	+		EFB2_03487	0.27	+0.9
3,636,659	-		EFB2_03487	0.27	-1.4
3,636,659	-		EFB2_03487	0.27	-2.3
3,636,668	+		EFB2_03487	0.28	+1.0
3,636,668	+		EFB2_03487	0.28	-1.1
3,636,668	+		EFB2_03487	0.28	-2.7
3,636,668	+		EFB2_03487	0.28	+0.2
3,636,668	+		EFB2_03487	0.28	-0.4
3,636,668	+		EFB2_03487	0.28	-0.3
3,636,668	+		EFB2_03487	0.28	-0.4
3,636,668	+		EFB2_03487	0.28	-2.8
3,636,668	+		EFB2_03487	0.28	+3.1
3,636,669	-		EFB2_03487	0.28	+0.8
3,636,669	-		EFB2_03487	0.28	-2.3
3,636,674	+		EFB2_03487	0.29	-0.9
3,636,674	+		EFB2_03487	0.29	+2.1
3,636,674	+		EFB2_03487	0.29	+0.8
3,636,674	+		EFB2_03487	0.29	+0.3
3,636,674	+		EFB2_03487	0.29	+1.7
3,636,674	+		EFB2_03487	0.29	-0.4
3,636,674	+		EFB2_03487	0.29	+0.5
3,636,674	+		EFB2_03487	0.29	+0.4
3,636,674	+		EFB2_03487	0.29	-1.8
3,636,674	+		EFB2_03487	0.29	-1.2
3,636,674	+		EFB2_03487	0.29	+1.1
3,636,674	+		EFB2_03487	0.29	-1.4
3,636,675	-		EFB2_03487	0.29	+1.8
3,636,675	-		EFB2_03487	0.29	+0.9
3,636,675	-		EFB2_03487	0.29	+2.0
3,636,675	-		EFB2_03487	0.29	+0.1
3,636,675	-		EFB2_03487	0.29	+0.4
3,636,675	-		EFB2_03487	0.29	-1.2
3,636,675	-		EFB2_03487	0.29	+1.1
3,636,675	-		EFB2_03487	0.29	+0.8
3,636,675	-		EFB2_03487	0.29	-1.1
3,636,675	-		EFB2_03487	0.29	-0.9
3,636,675	-		EFB2_03487	0.29	-2.2
3,636,700	+		EFB2_03487	0.32	-3.3
3,636,700	+		EFB2_03487	0.32	+0.3
3,636,700	+		EFB2_03487	0.32	+0.6
3,636,701	-		EFB2_03487	0.33	+1.4
3,636,701	-		EFB2_03487	0.33	+1.1
3,636,701	-		EFB2_03487	0.33	+0.3
3,636,701	-		EFB2_03487	0.33	-1.2
3,636,710	-		EFB2_03487	0.34	+1.1
3,636,725	+		EFB2_03487	0.36	-0.2
3,636,726	-		EFB2_03487	0.36	+0.8
3,636,788	-		EFB2_03487	0.44	+0.2
3,636,812	+		EFB2_03487	0.47	+0.9
3,636,812	+		EFB2_03487	0.47	+0.4
3,636,812	+		EFB2_03487	0.47	-0.2
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