Strain Fitness in Escherichia fergusonii Becca around EFB2_02869

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,006,024	+				-1.3
3,006,024	+				-1.2
3,006,024	+				+0.8
3,006,024	+				+1.4
3,006,025	-				-2.4
3,006,025	-				+1.4
3,006,025	-				-0.8
3,006,025	-				+1.6
3,006,025	-				+1.0
3,006,025	-				-0.8
3,006,025	-				-0.3
3,006,098	+		EFB2_02868	0.11	-0.6
3,006,099	-		EFB2_02868	0.11	-0.7
3,006,099	-		EFB2_02868	0.11	+0.2
3,006,113	+		EFB2_02868	0.12	+1.5
3,006,143	+		EFB2_02868	0.15	-0.2
3,006,143	+		EFB2_02868	0.15	-2.1
3,006,144	-		EFB2_02868	0.15	-2.4
3,006,144	-		EFB2_02868	0.15	+1.8
3,006,144	-		EFB2_02868	0.15	-0.6
3,006,147	+		EFB2_02868	0.15	-1.3
3,006,148	-		EFB2_02868	0.16	-0.5
3,006,168	-		EFB2_02868	0.18	+0.2
3,006,173	+		EFB2_02868	0.18	+1.6
3,006,173	+		EFB2_02868	0.18	-0.1
3,006,191	+		EFB2_02868	0.20	-0.4
3,006,191	+		EFB2_02868	0.20	+0.2
3,006,192	-		EFB2_02868	0.20	+1.4
3,006,192	-		EFB2_02868	0.20	+1.1
3,006,232	+		EFB2_02868	0.24	+1.7
3,006,232	+		EFB2_02868	0.24	+0.2
3,006,232	+		EFB2_02868	0.24	+0.3
3,006,233	-		EFB2_02868	0.24	-0.1
3,006,233	-		EFB2_02868	0.24	+2.3
3,006,233	-		EFB2_02868	0.24	+1.2
3,006,243	-		EFB2_02868	0.25	-0.9
3,006,265	-		EFB2_02868	0.27	-0.3
3,006,265	-		EFB2_02868	0.27	-0.6
3,006,329	-		EFB2_02868	0.33	+0.4
3,006,367	+		EFB2_02868	0.37	+2.4
3,006,367	+		EFB2_02868	0.37	-1.6
3,006,367	+		EFB2_02868	0.37	+2.8
3,006,367	+		EFB2_02868	0.37	-2.2
3,006,367	+		EFB2_02868	0.37	-1.5
3,006,367	+		EFB2_02868	0.37	+1.4
3,006,367	+		EFB2_02868	0.37	+1.0
3,006,368	-		EFB2_02868	0.37	-0.3
3,006,368	-		EFB2_02868	0.37	-1.4
3,006,368	-		EFB2_02868	0.37	+0.6
3,006,368	-		EFB2_02868	0.37	+0.5
3,006,368	-		EFB2_02868	0.37	-2.3
3,006,368	-		EFB2_02868	0.37	+0.9
3,006,368	-		EFB2_02868	0.37	-2.3
3,006,368	-		EFB2_02868	0.37	-0.1
3,006,368	-		EFB2_02868	0.37	+0.2
3,006,368	-		EFB2_02868	0.37	+1.6
3,006,386	+		EFB2_02868	0.39	+1.3
3,006,386	+		EFB2_02868	0.39	-1.6
3,006,387	-		EFB2_02868	0.39	+1.6
3,006,401	+		EFB2_02868	0.40	+2.9
3,006,415	-		EFB2_02868	0.42	+0.2
3,006,415	-		EFB2_02868	0.42	-1.2
3,006,434	+		EFB2_02868	0.43	-2.1
3,006,434	+		EFB2_02868	0.43	-1.3
3,006,434	+		EFB2_02868	0.43	+0.2
3,006,434	+		EFB2_02868	0.43	-1.0
3,006,434	+		EFB2_02868	0.43	-0.1
3,006,434	+		EFB2_02868	0.43	-1.0
3,006,434	+		EFB2_02868	0.43	+1.4
3,006,434	+		EFB2_02868	0.43	+2.0
3,006,434	+		EFB2_02868	0.43	+0.6
3,006,435	-		EFB2_02868	0.44	-1.0
3,006,435	-		EFB2_02868	0.44	+5.3
3,006,435	-		EFB2_02868	0.44	+1.3
3,006,435	-		EFB2_02868	0.44	-0.1
3,006,435	-		EFB2_02868	0.44	+1.7
3,006,435	-		EFB2_02868	0.44	-2.1
3,006,435	-		EFB2_02868	0.44	+0.0
3,006,435	-		EFB2_02868	0.44	+0.0
3,006,435	-		EFB2_02868	0.44	+0.8
3,006,435	-		EFB2_02868	0.44	-1.5
3,006,557	+		EFB2_02868	0.55	-2.0
3,006,557	+		EFB2_02868	0.55	-2.8
3,006,557	+		EFB2_02868	0.55	-2.3
3,006,557	+		EFB2_02868	0.55	-0.6
3,006,557	+		EFB2_02868	0.55	-0.6
3,006,557	+		EFB2_02868	0.55	+2.1
3,006,557	+		EFB2_02868	0.55	+0.6
3,006,557	+		EFB2_02868	0.55	-1.4
3,006,557	+		EFB2_02868	0.55	+1.5
3,006,557	+		EFB2_02868	0.55	+1.5
3,006,557	+		EFB2_02868	0.55	+1.0
3,006,557	+		EFB2_02868	0.55	+0.2
3,006,557	+		EFB2_02868	0.55	-0.0
3,006,557	+		EFB2_02868	0.55	-0.2
3,006,557	+		EFB2_02868	0.55	-2.3
3,006,558	-		EFB2_02868	0.56	-1.7
3,006,558	-		EFB2_02868	0.56	-1.1
3,006,558	-		EFB2_02868	0.56	+1.7
3,006,558	-		EFB2_02868	0.56	-0.9
3,006,558	-		EFB2_02868	0.56	+0.3
3,006,558	-		EFB2_02868	0.56	+0.1
3,006,558	-		EFB2_02868	0.56	+0.5
3,006,558	-		EFB2_02868	0.56	+1.3
3,006,558	-		EFB2_02868	0.56	-2.7
3,006,558	-		EFB2_02868	0.56	-0.1
3,006,558	-		EFB2_02868	0.56	+0.6
3,006,558	-		EFB2_02868	0.56	-0.4
3,006,558	-		EFB2_02868	0.56	+1.7
3,006,558	-		EFB2_02868	0.56	-0.8
3,006,558	-		EFB2_02868	0.56	+1.8
3,006,558	-		EFB2_02868	0.56	-0.4
3,006,558	-		EFB2_02868	0.56	+0.6
3,006,558	-		EFB2_02868	0.56	+0.5
3,006,558	-		EFB2_02868	0.56	-2.4
3,006,558	-		EFB2_02868	0.56	+1.8
3,006,566	+		EFB2_02868	0.56	-0.5
3,006,567	-		EFB2_02868	0.56	-1.7
3,006,610	+		EFB2_02868	0.61	-2.2
3,006,610	+		EFB2_02868	0.61	+0.9
3,006,610	+		EFB2_02868	0.61	-0.8
3,006,610	+		EFB2_02868	0.61	+1.2
3,006,611	-		EFB2_02868	0.61	-1.0
3,006,638	+		EFB2_02868	0.63	+0.9
3,006,638	+		EFB2_02868	0.63	-0.5
3,006,639	-		EFB2_02868	0.63	+1.0
3,006,683	+		EFB2_02868	0.68	+2.4
3,006,684	-		EFB2_02868	0.68	-1.3
3,006,684	-		EFB2_02868	0.68	+0.0
3,006,888	+		EFB2_02868	0.88	+1.0
3,006,888	+		EFB2_02868	0.88	-2.3
3,006,888	+		EFB2_02868	0.88	+0.1
3,006,889	-		EFB2_02868	0.88	+4.7
3,006,907	+		EFB2_02868	0.90	-1.4
3,006,908	-		EFB2_02868	0.90	+1.0
3,006,954	+				-1.0
3,006,955	-				+1.0
3,007,003	-				-0.0
3,007,003	-				-1.9
3,007,003	-				+3.2
3,007,025	+				+0.0
3,007,025	+				+0.7
3,007,025	+				+2.2
3,007,025	+				+0.3
3,007,026	-				-0.2
3,007,033	+				+1.5
3,007,033	+				+0.6
3,007,033	+				-0.6
3,007,034	-				+0.1
3,007,034	-				-0.0
3,007,034	-				+0.8
3,007,034	-				-1.8
3,007,036	+				-2.1
3,007,036	+				+1.9
3,007,036	+				+1.8
3,007,037	-				+0.4
3,007,037	-				-2.3
3,007,037	-				+2.2
3,007,039	+				+1.0
3,007,039	+				+1.2
3,007,039	+				-1.6
3,007,039	+				-0.4
3,007,039	+				+0.8
3,007,039	+				+0.3
3,007,039	+				+0.5
3,007,040	-				-0.6
3,007,040	-				+0.0
3,007,040	-				+2.2
3,007,040	-				+0.8
3,007,071	+				-0.3
3,007,072	-				-1.9
3,007,165	+		EFB2_02869	0.17	+2.9
3,007,166	-		EFB2_02869	0.17	-0.7
3,007,166	-		EFB2_02869	0.17	-1.2
3,007,166	-		EFB2_02869	0.17	+0.9
3,007,178	+		EFB2_02869	0.19	+1.8
3,007,179	-		EFB2_02869	0.19	-0.7
3,007,179	-		EFB2_02869	0.19	+1.2
3,007,199	+		EFB2_02869	0.21	+0.5
3,007,199	+		EFB2_02869	0.21	+0.6
3,007,199	+		EFB2_02869	0.21	+0.2
3,007,199	+		EFB2_02869	0.21	+1.9
3,007,199	+		EFB2_02869	0.21	+0.6
3,007,200	-		EFB2_02869	0.21	-0.5
3,007,200	-		EFB2_02869	0.21	-1.4
3,007,200	-		EFB2_02869	0.21	+0.7
3,007,200	-		EFB2_02869	0.21	+1.8
3,007,200	-		EFB2_02869	0.21	-0.0
3,007,200	-		EFB2_02869	0.21	+0.3
3,007,200	-		EFB2_02869	0.21	-0.6
3,007,200	-		EFB2_02869	0.21	-0.2
3,007,200	-		EFB2_02869	0.21	-0.6
3,007,200	-		EFB2_02869	0.21	-2.1
3,007,200	-		EFB2_02869	0.21	+1.7
3,007,200	-		EFB2_02869	0.21	-2.2
3,007,200	-		EFB2_02869	0.21	+0.3
3,007,200	-		EFB2_02869	0.21	+2.4
3,007,200	-		EFB2_02869	0.21	+1.0
3,007,231	-		EFB2_02869	0.25	-1.4
3,007,283	+		EFB2_02869	0.31	+1.1
3,007,283	+		EFB2_02869	0.31	+0.8
3,007,284	-		EFB2_02869	0.32	-0.1
3,007,284	-		EFB2_02869	0.32	+2.2
3,007,317	+		EFB2_02869	0.36	-3.2
3,007,318	-		EFB2_02869	0.36	+0.6
3,007,318	-		EFB2_02869	0.36	+1.4
3,007,347	+		EFB2_02869	0.39	-0.8
3,007,347	+		EFB2_02869	0.39	+0.2
3,007,347	+		EFB2_02869	0.39	+1.4
3,007,347	+		EFB2_02869	0.39	+1.0
3,007,347	+		EFB2_02869	0.39	+1.0
3,007,347	+		EFB2_02869	0.39	+0.6
3,007,347	+		EFB2_02869	0.39	+2.2
3,007,348	-		EFB2_02869	0.39	-0.8
3,007,348	-		EFB2_02869	0.39	+0.6
3,007,348	-		EFB2_02869	0.39	-0.6
3,007,348	-		EFB2_02869	0.39	+2.5
3,007,348	-		EFB2_02869	0.39	+0.7
3,007,348	-		EFB2_02869	0.39	+0.4
3,007,348	-		EFB2_02869	0.39	-0.4
3,007,348	-		EFB2_02869	0.39	-1.7
3,007,360	+		EFB2_02869	0.41	-0.7
3,007,360	+		EFB2_02869	0.41	-1.0
3,007,360	+		EFB2_02869	0.41	+2.3
3,007,360	+		EFB2_02869	0.41	+0.6
3,007,360	+		EFB2_02869	0.41	-0.8
3,007,360	+		EFB2_02869	0.41	-2.6
3,007,360	+		EFB2_02869	0.41	+2.5
3,007,360	+		EFB2_02869	0.41	+2.5
3,007,361	-		EFB2_02869	0.41	-0.9
3,007,361	-		EFB2_02869	0.41	+0.8
3,007,361	-		EFB2_02869	0.41	+1.8
3,007,361	-		EFB2_02869	0.41	-3.1
3,007,361	-		EFB2_02869	0.41	+1.3
3,007,366	+		EFB2_02869	0.41	+1.5
3,007,366	+		EFB2_02869	0.41	+2.2
3,007,367	-		EFB2_02869	0.42	+0.1
3,007,367	-		EFB2_02869	0.42	-0.1
3,007,402	+		EFB2_02869	0.46	+0.0
3,007,403	-		EFB2_02869	0.46	+0.7
3,007,454	+		EFB2_02869	0.52	+0.1
3,007,454	+		EFB2_02869	0.52	-3.6
3,007,455	-		EFB2_02869	0.52	+3.0
3,007,455	-		EFB2_02869	0.52	+2.4
3,007,510	+		EFB2_02869	0.59	-1.3
3,007,510	+		EFB2_02869	0.59	-2.7
3,007,510	+		EFB2_02869	0.59	+0.1
3,007,510	+		EFB2_02869	0.59	+1.3
3,007,511	-		EFB2_02869	0.59	+1.8
3,007,511	-		EFB2_02869	0.59	+0.2
3,007,511	-		EFB2_02869	0.59	+0.3
3,007,511	-		EFB2_02869	0.59	-1.3
3,007,511	-		EFB2_02869	0.59	-2.1
3,007,514	+		EFB2_02869	0.59	-0.4
3,007,514	+		EFB2_02869	0.59	+0.8
3,007,514	+		EFB2_02869	0.59	-1.8
3,007,514	+		EFB2_02869	0.59	+0.8
3,007,514	+		EFB2_02869	0.59	-3.0
3,007,514	+		EFB2_02869	0.59	+0.8
3,007,514	+		EFB2_02869	0.59	+2.2
3,007,514	+		EFB2_02869	0.59	-0.8
3,007,514	+		EFB2_02869	0.59	-1.3
3,007,514	+		EFB2_02869	0.59	+1.8
3,007,514	+		EFB2_02869	0.59	-1.8
3,007,514	+		EFB2_02869	0.59	+0.0
3,007,515	-		EFB2_02869	0.60	+1.6
3,007,515	-		EFB2_02869	0.60	+1.3
3,007,515	-		EFB2_02869	0.60	+1.2
3,007,515	-		EFB2_02869	0.60	-0.1
3,007,515	-		EFB2_02869	0.60	-0.4
3,007,515	-		EFB2_02869	0.60	+0.3
3,007,515	-		EFB2_02869	0.60	-0.7
3,007,515	-		EFB2_02869	0.60	+0.9
3,007,515	-		EFB2_02869	0.60	+1.1
3,007,515	-		EFB2_02869	0.60	-0.1
3,007,515	-		EFB2_02869	0.60	+1.0
3,007,517	+		EFB2_02869	0.60	+0.3
3,007,517	+		EFB2_02869	0.60	+1.4
3,007,517	+		EFB2_02869	0.60	+0.6
3,007,517	+		EFB2_02869	0.60	+0.1
3,007,517	+		EFB2_02869	0.60	+0.2
3,007,517	+		EFB2_02869	0.60	+0.5
3,007,517	+		EFB2_02869	0.60	-2.3
3,007,518	-		EFB2_02869	0.60	+0.2
3,007,518	-		EFB2_02869	0.60	-0.1
3,007,518	-		EFB2_02869	0.60	-0.6
3,007,554	-		EFB2_02869	0.64	+0.0
3,007,577	+		EFB2_02869	0.67	+2.1
3,007,577	+		EFB2_02869	0.67	+0.1
3,007,578	-		EFB2_02869	0.67	+2.2
3,007,578	-		EFB2_02869	0.67	+0.2
3,007,578	-		EFB2_02869	0.67	-0.2
3,007,604	+		EFB2_02869	0.70	+0.8
3,007,604	+		EFB2_02869	0.70	+0.6
3,007,604	+		EFB2_02869	0.70	-0.4
3,007,605	-		EFB2_02869	0.70	-0.5
3,007,605	-		EFB2_02869	0.70	-0.6
3,007,605	-		EFB2_02869	0.70	-0.2
3,007,605	-		EFB2_02869	0.70	+0.8
3,007,605	-		EFB2_02869	0.70	-0.8
3,007,605	-		EFB2_02869	0.70	-1.7
3,007,606	+		EFB2_02869	0.71	+2.2
3,007,606	+		EFB2_02869	0.71	-3.1
3,007,606	+		EFB2_02869	0.71	+0.5
3,007,606	+		EFB2_02869	0.71	-0.6
3,007,606	+		EFB2_02869	0.71	-0.1
3,007,606	+		EFB2_02869	0.71	+0.8
3,007,606	+		EFB2_02869	0.71	+1.3
3,007,606	+		EFB2_02869	0.71	+1.7
3,007,606	+		EFB2_02869	0.71	-1.4
3,007,606	+		EFB2_02869	0.71	+1.9
3,007,606	+		EFB2_02869	0.71	-0.3
3,007,606	+		EFB2_02869	0.71	+0.3
3,007,606	+		EFB2_02869	0.71	+0.5
3,007,606	+		EFB2_02869	0.71	+0.4
3,007,606	+		EFB2_02869	0.71	-1.3
3,007,606	+		EFB2_02869	0.71	+2.6
3,007,606	+		EFB2_02869	0.71	+1.7
3,007,607	-		EFB2_02869	0.71	-0.7
3,007,607	-		EFB2_02869	0.71	+0.5
3,007,607	-		EFB2_02869	0.71	-0.4
3,007,607	-		EFB2_02869	0.71	+0.6
3,007,607	-		EFB2_02869	0.71	-0.8
3,007,607	-		EFB2_02869	0.71	-0.1
3,007,607	-		EFB2_02869	0.71	+1.2
3,007,607	-		EFB2_02869	0.71	+1.2
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