Strain Fitness in Escherichia fergusonii Becca around EFB2_02514

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,645,429	-				+1.5
2,645,435	+				+1.0
2,645,436	-				+0.7
2,645,445	+				-2.6
2,645,445	+				+0.9
2,645,446	-				+0.6
2,645,446	-				-1.4
2,645,468	+				-1.1
2,645,468	+				+0.0
2,645,468	+				-0.8
2,645,469	-				+0.4
2,645,498	+				+0.9
2,645,498	+				+1.4
2,645,498	+				-0.9
2,645,498	+				-0.1
2,645,498	+				-0.8
2,645,498	+				-0.8
2,645,498	+				-2.1
2,645,498	+				+1.0
2,645,498	+				-1.2
2,645,498	+				+1.4
2,645,498	+				-1.0
2,645,498	+				+1.4
2,645,498	+				+0.1
2,645,498	+				-2.0
2,645,498	+				+0.0
2,645,498	+				-0.4
2,645,498	+				-1.5
2,645,498	+				-1.0
2,645,498	+				+0.3
2,645,498	+				-1.3
2,645,498	+				+0.1
2,645,498	+				+0.4
2,645,498	+				-1.8
2,645,499	-				+0.1
2,645,499	-				+0.4
2,645,499	-				+0.7
2,645,499	-				+0.2
2,645,499	-				-1.1
2,645,499	-				-1.5
2,645,499	-				-0.0
2,645,499	-				-0.6
2,645,499	-				-1.8
2,645,499	-				+1.0
2,645,499	-				-1.2
2,645,499	-				+0.2
2,645,499	-				-0.2
2,645,499	-				-1.5
2,645,499	-				+0.5
2,645,499	-				+0.2
2,645,499	-				-2.5
2,645,499	-				+1.4
2,645,499	-				+0.1
2,645,499	-				-0.6
2,645,499	-				-0.4
2,645,499	-				+0.4
2,645,516	+				-0.0
2,645,516	+				-1.6
2,645,516	+				+1.4
2,645,517	-				+0.6
2,645,517	-				-1.7
2,645,547	-				+1.2
2,645,547	-				+0.1
2,645,605	+		EFB2_02513	0.10	+0.2
2,645,605	+		EFB2_02513	0.10	-2.8
2,645,605	+		EFB2_02513	0.10	+1.0
2,645,605	+		EFB2_02513	0.10	+1.8
2,645,605	+		EFB2_02513	0.10	+0.7
2,645,605	+		EFB2_02513	0.10	+1.4
2,645,605	+		EFB2_02513	0.10	-2.2
2,645,605	+		EFB2_02513	0.10	-0.2
2,645,605	+		EFB2_02513	0.10	-1.4
2,645,605	+		EFB2_02513	0.10	-0.1
2,645,605	+		EFB2_02513	0.10	-1.6
2,645,605	+		EFB2_02513	0.10	-2.7
2,645,605	+		EFB2_02513	0.10	+2.2
2,645,605	+		EFB2_02513	0.10	-1.7
2,645,605	+		EFB2_02513	0.10	-0.6
2,645,605	+		EFB2_02513	0.10	-0.7
2,645,605	+		EFB2_02513	0.10	+1.4
2,645,605	+		EFB2_02513	0.10	-0.6
2,645,605	+		EFB2_02513	0.10	-1.2
2,645,605	+		EFB2_02513	0.10	+0.8
2,645,606	-		EFB2_02513	0.11	-0.8
2,645,606	-		EFB2_02513	0.11	-1.7
2,645,606	-		EFB2_02513	0.11	-0.9
2,645,606	-		EFB2_02513	0.11	+1.4
2,645,606	-		EFB2_02513	0.11	+0.4
2,645,606	-		EFB2_02513	0.11	-0.6
2,645,606	-		EFB2_02513	0.11	-0.8
2,645,606	-		EFB2_02513	0.11	-0.6
2,645,606	-		EFB2_02513	0.11	+1.3
2,645,606	-		EFB2_02513	0.11	+1.9
2,645,606	-		EFB2_02513	0.11	+0.4
2,645,606	-		EFB2_02513	0.11	-0.1
2,645,606	-		EFB2_02513	0.11	+1.7
2,645,606	-		EFB2_02513	0.11	-0.8
2,645,628	-		EFB2_02513	0.13	-0.3
2,645,628	-		EFB2_02513	0.13	+1.4
2,645,678	+		EFB2_02513	0.18	-1.6
2,645,678	+		EFB2_02513	0.18	-1.2
2,645,678	+		EFB2_02513	0.18	-2.4
2,645,679	-		EFB2_02513	0.18	-1.5
2,645,711	+		EFB2_02513	0.21	-0.3
2,645,711	+		EFB2_02513	0.21	+0.2
2,645,711	+		EFB2_02513	0.21	-1.7
2,645,711	+		EFB2_02513	0.21	+1.1
2,645,711	+		EFB2_02513	0.21	+3.8
2,645,712	-		EFB2_02513	0.21	+0.1
2,645,719	+		EFB2_02513	0.22	+1.4
2,645,719	+		EFB2_02513	0.22	+0.9
2,645,719	+		EFB2_02513	0.22	-1.0
2,645,719	+		EFB2_02513	0.22	+1.3
2,645,720	-		EFB2_02513	0.22	-0.9
2,645,720	-		EFB2_02513	0.22	-0.6
2,645,754	+		EFB2_02513	0.25	+0.7
2,645,754	+		EFB2_02513	0.25	+0.1
2,645,754	+		EFB2_02513	0.25	-0.6
2,645,755	-		EFB2_02513	0.25	+0.4
2,645,755	-		EFB2_02513	0.25	-1.6
2,645,778	+		EFB2_02513	0.28	+2.7
2,645,783	+		EFB2_02513	0.28	-1.9
2,645,783	+		EFB2_02513	0.28	-1.7
2,645,784	-		EFB2_02513	0.28	+0.1
2,645,784	-		EFB2_02513	0.28	-0.5
2,645,816	+		EFB2_02513	0.31	-0.8
2,645,816	+		EFB2_02513	0.31	-1.1
2,645,829	+		EFB2_02513	0.33	-2.0
2,645,829	+		EFB2_02513	0.33	+0.8
2,645,830	-		EFB2_02513	0.33	+1.1
2,645,884	+		EFB2_02513	0.38	+0.8
2,645,885	-		EFB2_02513	0.38	+0.8
2,645,927	+		EFB2_02513	0.42	+0.3
2,645,927	+		EFB2_02513	0.42	+1.3
2,645,927	+		EFB2_02513	0.42	+1.1
2,645,927	+		EFB2_02513	0.42	-0.4
2,645,927	+		EFB2_02513	0.42	+0.8
2,645,927	+		EFB2_02513	0.42	+1.8
2,645,927	+		EFB2_02513	0.42	+1.8
2,645,928	-		EFB2_02513	0.42	-2.1
2,645,928	-		EFB2_02513	0.42	+0.4
2,645,928	-		EFB2_02513	0.42	+0.7
2,645,928	-		EFB2_02513	0.42	-1.6
2,645,930	-		EFB2_02513	0.43	-0.6
2,645,945	+		EFB2_02513	0.44	-0.5
2,645,946	-		EFB2_02513	0.44	+1.4
2,645,949	+		EFB2_02513	0.45	+1.3
2,645,949	+		EFB2_02513	0.45	-1.8
2,645,949	+		EFB2_02513	0.45	+0.9
2,645,949	+		EFB2_02513	0.45	+3.3
2,645,949	+		EFB2_02513	0.45	-2.7
2,645,949	+		EFB2_02513	0.45	-1.2
2,645,949	+		EFB2_02513	0.45	+1.8
2,645,949	+		EFB2_02513	0.45	-2.0
2,645,949	+		EFB2_02513	0.45	+0.6
2,645,949	+		EFB2_02513	0.45	-1.6
2,645,949	+		EFB2_02513	0.45	-1.8
2,645,949	+		EFB2_02513	0.45	-1.3
2,645,949	+		EFB2_02513	0.45	+0.1
2,645,949	+		EFB2_02513	0.45	+0.5
2,645,949	+		EFB2_02513	0.45	-0.9
2,645,950	-		EFB2_02513	0.45	+1.9
2,645,950	-		EFB2_02513	0.45	+2.4
2,645,950	-		EFB2_02513	0.45	+0.9
2,645,950	-		EFB2_02513	0.45	-0.2
2,645,996	+		EFB2_02513	0.49	+1.7
2,645,996	+		EFB2_02513	0.49	+1.1
2,645,996	+		EFB2_02513	0.49	-0.1
2,645,996	+		EFB2_02513	0.49	+0.7
2,645,997	-		EFB2_02513	0.49	-1.1
2,645,997	-		EFB2_02513	0.49	+3.8
2,645,997	-		EFB2_02513	0.49	+0.5
2,646,000	+		EFB2_02513	0.50	-0.3
2,646,000	+		EFB2_02513	0.50	-2.0
2,646,000	+		EFB2_02513	0.50	+0.8
2,646,000	+		EFB2_02513	0.50	-0.1
2,646,000	+		EFB2_02513	0.50	-1.5
2,646,000	+		EFB2_02513	0.50	-0.5
2,646,000	+		EFB2_02513	0.50	+1.4
2,646,000	+		EFB2_02513	0.50	-1.6
2,646,001	-		EFB2_02513	0.50	-2.4
2,646,001	-		EFB2_02513	0.50	-0.4
2,646,001	-		EFB2_02513	0.50	-0.8
2,646,001	-		EFB2_02513	0.50	+1.4
2,646,001	-		EFB2_02513	0.50	-0.8
2,646,001	-		EFB2_02513	0.50	+1.2
2,646,001	-		EFB2_02513	0.50	+0.4
2,646,036	+		EFB2_02513	0.53	+0.8
2,646,094	+		EFB2_02513	0.59	-1.5
2,646,094	+		EFB2_02513	0.59	-1.9
2,646,094	+		EFB2_02513	0.59	-0.6
2,646,131	+		EFB2_02513	0.63	+0.5
2,646,132	-		EFB2_02513	0.63	+2.0
2,646,212	+		EFB2_02513	0.71	+1.9
2,646,212	+		EFB2_02513	0.71	-2.3
2,646,212	+		EFB2_02513	0.71	+0.2
2,646,212	+		EFB2_02513	0.71	-1.3
2,646,212	+		EFB2_02513	0.71	-1.8
2,646,212	+		EFB2_02513	0.71	-0.3
2,646,212	+		EFB2_02513	0.71	-0.2
2,646,213	-		EFB2_02513	0.71	-2.1
2,646,213	-		EFB2_02513	0.71	-0.1
2,646,213	-		EFB2_02513	0.71	-0.2
2,646,224	+		EFB2_02513	0.72	-0.5
2,646,225	-		EFB2_02513	0.72	-0.2
2,646,291	-		EFB2_02513	0.78	-1.1
2,646,291	-		EFB2_02513	0.78	-1.8
2,646,291	-		EFB2_02513	0.78	-0.6
2,646,326	+		EFB2_02513	0.82	+1.4
2,646,327	-		EFB2_02513	0.82	+0.4
2,646,327	-		EFB2_02513	0.82	+0.7
2,646,327	-		EFB2_02513	0.82	-0.5
2,646,367	+		EFB2_02513	0.86	+0.8
2,646,448	+				+0.3
2,646,448	+				-1.9
2,646,449	-				+2.4
2,646,452	+				+0.4
2,646,452	+				+0.9
2,646,453	-				-1.8
2,646,485	+				+0.1
2,646,486	-				-0.2
2,646,508	-				+1.0
2,646,508	-				+0.1
2,646,508	-				-0.9
2,646,663	-				-0.5
2,646,700	-				-0.2
2,646,760	+		EFB2_02515	0.23	-1.6
2,646,760	+		EFB2_02515	0.23	-0.7
2,646,762	+		EFB2_02515	0.24	-1.5
2,646,762	+		EFB2_02515	0.24	-1.3
2,646,762	+		EFB2_02515	0.24	-0.8
2,646,783	+		EFB2_02515	0.32	+0.6
2,646,783	+		EFB2_02515	0.32	+2.7
2,646,835	+		EFB2_02515	0.50	-0.9
2,646,835	+		EFB2_02515	0.50	-1.8
2,646,852	+		EFB2_02515	0.56	-0.6
2,646,852	+		EFB2_02515	0.56	-0.1
2,646,852	+		EFB2_02515	0.56	-1.4
2,646,852	+		EFB2_02515	0.56	+0.4
2,646,861	+		EFB2_02515	0.59	+1.2
2,646,944	+		EFB2_02515	0.89	-0.3
2,646,944	+		EFB2_02515	0.89	-0.9
2,646,944	+		EFB2_02515	0.89	-1.8
2,646,944	+		EFB2_02515	0.89	-0.2
2,646,944	+		EFB2_02515	0.89	+0.8
2,646,944	+		EFB2_02515	0.89	-0.2
2,646,944	+		EFB2_02515	0.89	+0.1
2,646,944	+		EFB2_02515	0.89	+1.9
2,646,944	+		EFB2_02515	0.89	-0.9
2,646,944	+		EFB2_02515	0.89	-1.6
2,646,944	+		EFB2_02515	0.89	+1.2
2,646,944	+		EFB2_02515	0.89	+0.1
2,646,944	+		EFB2_02515	0.89	-0.4
2,646,944	+		EFB2_02515	0.89	-2.2
2,646,944	+		EFB2_02515	0.89	-2.2
2,646,944	+		EFB2_02515	0.89	-1.4
2,646,944	+		EFB2_02515	0.89	+0.1
2,646,944	+		EFB2_02515	0.89	+2.1
2,646,944	+		EFB2_02515	0.89	+1.6
2,646,944	+		EFB2_02515	0.89	-0.2
2,646,944	+		EFB2_02515	0.89	+1.7
2,646,944	+		EFB2_02515	0.89	-0.4
2,646,944	+		EFB2_02515	0.89	-1.8
2,646,944	+		EFB2_02515	0.89	+1.3
2,646,944	+		EFB2_02515	0.89	+0.8
2,646,944	+		EFB2_02515	0.89	-1.6
2,646,944	+		EFB2_02515	0.89	-0.9
2,646,944	+		EFB2_02515	0.89	+3.2
2,646,944	+		EFB2_02515	0.89	-0.4
2,646,944	+		EFB2_02515	0.89	-0.0
2,646,944	+		EFB2_02515	0.89	+0.4
2,646,944	+		EFB2_02515	0.89	-0.0
2,646,944	+		EFB2_02515	0.89	-1.1
2,646,944	+		EFB2_02515	0.89	-1.2
2,646,944	+		EFB2_02515	0.89	-0.5
2,646,944	+		EFB2_02515	0.89	-2.9
2,646,944	+		EFB2_02515	0.89	+0.2
2,646,944	+		EFB2_02515	0.89	-1.1
2,646,944	+		EFB2_02515	0.89	+2.1
2,646,944	+		EFB2_02515	0.89	+0.6
2,646,944	+		EFB2_02515	0.89	+0.4
2,646,944	+		EFB2_02515	0.89	-0.4
2,646,944	+		EFB2_02515	0.89	-0.1
2,646,944	+		EFB2_02515	0.89	-2.2
2,646,944	+		EFB2_02515	0.89	-1.9
2,646,944	+		EFB2_02515	0.89	-0.2
2,646,944	+		EFB2_02515	0.89	+0.1
2,646,944	+		EFB2_02515	0.89	+0.1
2,646,944	+		EFB2_02515	0.89	+2.1
2,646,944	+		EFB2_02515	0.89	-0.6
2,646,944	+		EFB2_02515	0.89	+0.1
2,646,944	+		EFB2_02515	0.89	-0.1
2,646,944	+		EFB2_02515	0.89	+0.8
2,646,944	+		EFB2_02515	0.89	+0.1
2,646,944	+		EFB2_02515	0.89	-1.4
2,646,944	+		EFB2_02515	0.89	-0.4
2,646,944	+		EFB2_02515	0.89	+1.8
2,646,944	+		EFB2_02515	0.89	+0.0
2,646,944	+		EFB2_02515	0.89	-0.9
2,646,944	+		EFB2_02515	0.89	+0.6
2,646,944	+		EFB2_02515	0.89	-1.3
2,646,945	-		EFB2_02515	0.90	-1.4
2,646,945	-		EFB2_02515	0.90	-0.4
2,646,945	-		EFB2_02515	0.90	+0.8
2,646,945	-		EFB2_02515	0.90	-1.6
2,646,945	-		EFB2_02515	0.90	+0.8
2,646,945	-		EFB2_02515	0.90	-0.6
2,646,945	-		EFB2_02515	0.90	-1.8
2,646,945	-		EFB2_02515	0.90	-1.3
2,646,945	-		EFB2_02515	0.90	+1.9
2,646,945	-		EFB2_02515	0.90	-0.5
2,646,945	-		EFB2_02515	0.90	-1.4
2,646,945	-		EFB2_02515	0.90	-2.2
2,646,945	-		EFB2_02515	0.90	+2.5
2,646,945	-		EFB2_02515	0.90	+0.1
2,646,945	-		EFB2_02515	0.90	-1.2
2,646,945	-		EFB2_02515	0.90	-0.4
2,646,948	+				-1.4
2,646,948	+				-2.0
2,646,948	+				-3.0
2,646,948	+				+0.2
2,646,956	+				+0.5
2,646,956	+				+2.4
2,646,957	-				+2.4
2,646,965	+				+1.1
2,646,965	+				+1.1
2,646,965	+				-0.4
2,646,965	+				-0.5
2,646,965	+				-1.8
2,647,271	+				-1.4
2,647,271	+				-0.9
2,647,271	+				+2.3
2,647,271	+				-1.8
2,647,272	-				+1.4
2,647,272	-				-1.5
2,647,274	-				+1.0
2,647,428	+				+0.4
2,647,428	+				+1.6
2,647,428	+				+2.0
2,647,428	+				+0.8
2,647,429	-				+0.8
2,647,429	-				-0.1
2,647,429	-				-1.3
2,647,429	-				+1.9
2,647,451	+				-0.7
2,647,451	+				-0.2
2,647,471	-				-0.8
2,647,487	+				-1.9
2,647,487	+				+0.9
2,647,487	+				-1.8
2,647,487	+				+2.8
2,647,487	+				-1.8
2,647,487	+				+0.9
2,647,488	-				+0.1
2,647,488	-				+3.1
2,647,488	-				-0.0
2,647,488	-				-0.2
2,647,488	-				-3.2
2,647,488	-				+0.4
2,647,488	-				+0.7
2,647,488	-				+0.1
2,647,488	-				-0.3
2,647,489	+				+2.1
2,647,489	+				-0.4
2,647,490	-				-1.7
2,647,490	-				-1.6
2,647,599	+		EFB2_02517	0.17	+4.4