Strain Fitness in Escherichia fergusonii Becca around EFB2_02439

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,578,928	+		EFB2_02438	0.47	-0.9
2,578,928	+		EFB2_02438	0.47	+0.7
2,578,928	+		EFB2_02438	0.47	+0.0
2,578,948	+		EFB2_02438	0.48	+0.6
2,578,950	+		EFB2_02438	0.49	-1.0
2,578,950	+		EFB2_02438	0.49	+0.1
2,578,950	+		EFB2_02438	0.49	-1.3
2,578,950	+		EFB2_02438	0.49	+1.4
2,578,950	+		EFB2_02438	0.49	+2.9
2,578,951	-		EFB2_02438	0.49	+1.0
2,578,951	-		EFB2_02438	0.49	+2.4
2,578,951	-		EFB2_02438	0.49	+0.4
2,578,951	-		EFB2_02438	0.49	-2.2
2,578,961	+		EFB2_02438	0.49	+0.8
2,578,961	+		EFB2_02438	0.49	-0.7
2,578,961	+		EFB2_02438	0.49	+0.2
2,578,962	-		EFB2_02438	0.49	-0.9
2,578,962	-		EFB2_02438	0.49	+0.4
2,578,962	-		EFB2_02438	0.49	-0.7
2,578,962	-		EFB2_02438	0.49	+1.4
2,579,003	+		EFB2_02438	0.52	+0.0
2,579,028	+		EFB2_02438	0.54	+1.3
2,579,029	-		EFB2_02438	0.54	-1.6
2,579,100	-		EFB2_02438	0.59	-2.0
2,579,109	+		EFB2_02438	0.60	+1.7
2,579,109	+		EFB2_02438	0.60	-0.1
2,579,109	+		EFB2_02438	0.60	+2.4
2,579,110	-		EFB2_02438	0.60	+0.4
2,579,110	-		EFB2_02438	0.60	-1.3
2,579,110	-		EFB2_02438	0.60	-0.6
2,579,194	+		EFB2_02438	0.66	+1.4
2,579,194	+		EFB2_02438	0.66	+1.7
2,579,194	+		EFB2_02438	0.66	-3.6
2,579,195	-		EFB2_02438	0.66	-1.7
2,579,212	+		EFB2_02438	0.67	-0.8
2,579,212	+		EFB2_02438	0.67	-1.6
2,579,212	+		EFB2_02438	0.67	-0.1
2,579,213	-		EFB2_02438	0.67	+1.0
2,579,213	-		EFB2_02438	0.67	+0.7
2,579,213	-		EFB2_02438	0.67	+1.2
2,579,295	+		EFB2_02438	0.73	-1.3
2,579,301	+		EFB2_02438	0.73	+0.9
2,579,301	+		EFB2_02438	0.73	+0.4
2,579,301	+		EFB2_02438	0.73	+2.1
2,579,301	+		EFB2_02438	0.73	-0.4
2,579,302	-		EFB2_02438	0.73	+2.1
2,579,305	+		EFB2_02438	0.74	-1.0
2,579,305	+		EFB2_02438	0.74	-2.1
2,579,305	+		EFB2_02438	0.74	+1.9
2,579,305	+		EFB2_02438	0.74	+0.7
2,579,305	+		EFB2_02438	0.74	+0.4
2,579,305	+		EFB2_02438	0.74	+0.7
2,579,305	+		EFB2_02438	0.74	+2.1
2,579,305	+		EFB2_02438	0.74	-0.6
2,579,305	+		EFB2_02438	0.74	+0.2
2,579,305	+		EFB2_02438	0.74	+0.4
2,579,305	+		EFB2_02438	0.74	-1.7
2,579,305	+		EFB2_02438	0.74	+1.8
2,579,305	+		EFB2_02438	0.74	+1.3
2,579,305	+		EFB2_02438	0.74	+0.5
2,579,305	+		EFB2_02438	0.74	+3.4
2,579,305	+		EFB2_02438	0.74	-0.1
2,579,305	+		EFB2_02438	0.74	+0.9
2,579,305	+		EFB2_02438	0.74	-2.0
2,579,305	+		EFB2_02438	0.74	-1.1
2,579,305	+		EFB2_02438	0.74	-0.4
2,579,305	+		EFB2_02438	0.74	-1.1
2,579,305	+		EFB2_02438	0.74	+0.3
2,579,305	+		EFB2_02438	0.74	+1.1
2,579,306	-		EFB2_02438	0.74	-2.7
2,579,306	-		EFB2_02438	0.74	-0.6
2,579,306	-		EFB2_02438	0.74	+2.4
2,579,306	-		EFB2_02438	0.74	-0.1
2,579,306	-		EFB2_02438	0.74	-0.6
2,579,306	-		EFB2_02438	0.74	-1.9
2,579,306	-		EFB2_02438	0.74	-0.6
2,579,306	-		EFB2_02438	0.74	+0.3
2,579,306	-		EFB2_02438	0.74	-2.1
2,579,306	-		EFB2_02438	0.74	+2.4
2,579,306	-		EFB2_02438	0.74	+0.5
2,579,306	-		EFB2_02438	0.74	-0.7
2,579,352	+		EFB2_02438	0.77	+2.2
2,579,352	+		EFB2_02438	0.77	-0.1
2,579,352	+		EFB2_02438	0.77	-0.4
2,579,353	-		EFB2_02438	0.77	+1.7
2,579,450	+		EFB2_02438	0.84	+0.1
2,579,450	+		EFB2_02438	0.84	+1.0
2,579,450	+		EFB2_02438	0.84	-2.0
2,579,450	+		EFB2_02438	0.84	+0.6
2,579,469	+		EFB2_02438	0.85	+1.0
2,579,477	+		EFB2_02438	0.86	+0.1
2,579,477	+		EFB2_02438	0.86	-1.7
2,579,515	+		EFB2_02438	0.88	-1.7
2,579,516	-		EFB2_02438	0.88	+0.3
2,579,516	-		EFB2_02438	0.88	+1.4
2,579,525	+		EFB2_02438	0.89	+2.0
2,579,525	+		EFB2_02438	0.89	+0.1
2,579,525	+		EFB2_02438	0.89	+2.0
2,579,525	+		EFB2_02438	0.89	-2.0
2,579,529	+		EFB2_02438	0.89	+0.9
2,579,529	+		EFB2_02438	0.89	+0.7
2,579,529	+		EFB2_02438	0.89	+0.1
2,579,529	+		EFB2_02438	0.89	+0.9
2,579,529	+		EFB2_02438	0.89	+0.9
2,579,529	+		EFB2_02438	0.89	+2.6
2,579,530	-		EFB2_02438	0.89	-0.6
2,579,530	-		EFB2_02438	0.89	+1.8
2,579,558	-				-0.7
2,579,583	+				+2.3
2,579,583	+				-0.1
2,579,583	+				-2.7
2,579,584	-				+3.1
2,579,652	+				+1.1
2,579,728	+				-0.1
2,579,728	+				-1.1
2,579,729	-				+1.9
2,579,759	+				+0.4
2,579,759	+				+0.1
2,579,759	+				-0.6
2,579,759	+				-1.1
2,579,760	-				-1.7
2,579,760	-				+1.1
2,579,760	-				-1.5
2,579,789	+				+1.3
2,579,789	+				+1.0
2,579,789	+				-0.6
2,579,789	+				+0.2
2,579,790	-				-0.7
2,579,802	+				+0.6
2,579,802	+				-1.3
2,579,803	-				-1.7
2,579,803	-				-1.5
2,579,917	-				+1.3
2,579,956	+				+0.3
2,579,956	+				+1.2
2,579,956	+				+0.5
2,579,956	+				+2.3
2,579,956	+				-0.1
2,579,956	+				-1.0
2,579,956	+				+0.3
2,579,957	-				-0.7
2,579,957	-				-2.7
2,579,957	-				+0.8
2,579,960	-				+2.2
2,579,977	+				-0.4
2,579,977	+				-2.1
2,579,977	+				+2.2
2,579,978	-				-1.9
2,579,978	-				-1.6
2,580,110	+		EFB2_02439	0.14	-1.4
2,580,111	-		EFB2_02439	0.14	-1.7
2,580,111	-		EFB2_02439	0.14	+0.6
2,580,111	-		EFB2_02439	0.14	+0.9
2,580,111	-		EFB2_02439	0.14	-0.7
2,580,111	-		EFB2_02439	0.14	+0.9
2,580,111	-		EFB2_02439	0.14	+0.4
2,580,111	-		EFB2_02439	0.14	+0.3
2,580,111	-		EFB2_02439	0.14	-0.9
2,580,111	-		EFB2_02439	0.14	+0.6
2,580,111	-		EFB2_02439	0.14	-2.0
2,580,112	+		EFB2_02439	0.14	+1.9
2,580,112	+		EFB2_02439	0.14	+1.2
2,580,112	+		EFB2_02439	0.14	+2.0
2,580,112	+		EFB2_02439	0.14	-0.4
2,580,112	+		EFB2_02439	0.14	-1.0
2,580,112	+		EFB2_02439	0.14	+0.4
2,580,112	+		EFB2_02439	0.14	+1.6
2,580,112	+		EFB2_02439	0.14	+0.0
2,580,113	-		EFB2_02439	0.14	+1.6
2,580,113	-		EFB2_02439	0.14	+2.1
2,580,113	-		EFB2_02439	0.14	-0.1
2,580,113	-		EFB2_02439	0.14	-2.3
2,580,113	-		EFB2_02439	0.14	+2.4
2,580,113	-		EFB2_02439	0.14	-0.7
2,580,113	-		EFB2_02439	0.14	+0.5
2,580,121	+		EFB2_02439	0.15	-3.3
2,580,200	+		EFB2_02439	0.20	-2.7
2,580,201	-		EFB2_02439	0.20	-0.0
2,580,201	-		EFB2_02439	0.20	+0.1
2,580,201	-		EFB2_02439	0.20	+0.1
2,580,209	+		EFB2_02439	0.21	+0.2
2,580,209	+		EFB2_02439	0.21	-1.7
2,580,210	-		EFB2_02439	0.21	+1.4
2,580,210	-		EFB2_02439	0.21	-0.4
2,580,210	-		EFB2_02439	0.21	-0.6
2,580,210	-		EFB2_02439	0.21	+0.6
2,580,263	-		EFB2_02439	0.25	+1.3
2,580,263	-		EFB2_02439	0.25	-0.1
2,580,287	+		EFB2_02439	0.26	+2.5
2,580,287	+		EFB2_02439	0.26	-1.3
2,580,287	+		EFB2_02439	0.26	-1.7
2,580,287	+		EFB2_02439	0.26	+2.4
2,580,287	+		EFB2_02439	0.26	+1.0
2,580,287	+		EFB2_02439	0.26	-1.0
2,580,287	+		EFB2_02439	0.26	+1.9
2,580,288	-		EFB2_02439	0.26	+1.7
2,580,324	+		EFB2_02439	0.29	-0.9
2,580,324	+		EFB2_02439	0.29	-0.7
2,580,324	+		EFB2_02439	0.29	-0.7
2,580,325	-		EFB2_02439	0.29	+4.0
2,580,367	+		EFB2_02439	0.32	-0.6
2,580,367	+		EFB2_02439	0.32	+2.4
2,580,428	+		EFB2_02439	0.36	-0.9
2,580,428	+		EFB2_02439	0.36	-0.8
2,580,496	+		EFB2_02439	0.41	-1.1
2,580,496	+		EFB2_02439	0.41	-1.6
2,580,496	+		EFB2_02439	0.41	-0.5
2,580,496	+		EFB2_02439	0.41	-0.1
2,580,497	-		EFB2_02439	0.41	+2.4
2,580,497	-		EFB2_02439	0.41	-1.4
2,580,532	+		EFB2_02439	0.43	-2.0
2,580,533	-		EFB2_02439	0.43	-1.6
2,580,602	+		EFB2_02439	0.48	+1.0
2,580,638	+		EFB2_02439	0.50	+3.4
2,580,638	+		EFB2_02439	0.50	-2.4
2,580,639	-		EFB2_02439	0.50	+0.6
2,580,639	-		EFB2_02439	0.50	+1.5
2,580,639	-		EFB2_02439	0.50	-0.8
2,580,695	+		EFB2_02439	0.54	+2.0
2,580,727	+		EFB2_02439	0.57	-1.1
2,580,734	+		EFB2_02439	0.57	-0.1
2,580,734	+		EFB2_02439	0.57	-1.8
2,580,734	+		EFB2_02439	0.57	-1.1
2,580,736	+		EFB2_02439	0.57	-2.3
2,580,756	+		EFB2_02439	0.59	+0.9
2,580,816	+		EFB2_02439	0.63	+0.1
2,580,816	+		EFB2_02439	0.63	-1.0
2,580,816	+		EFB2_02439	0.63	+0.5
2,580,816	+		EFB2_02439	0.63	-0.4
2,580,816	+		EFB2_02439	0.63	-0.1
2,580,816	+		EFB2_02439	0.63	+0.6
2,580,816	+		EFB2_02439	0.63	-2.4
2,580,817	-		EFB2_02439	0.63	-0.4
2,580,869	+		EFB2_02439	0.66	-2.3
2,580,869	+		EFB2_02439	0.66	+0.0
2,580,869	+		EFB2_02439	0.66	-0.2
2,580,869	+		EFB2_02439	0.66	+0.4
2,580,869	+		EFB2_02439	0.66	-1.5
2,580,869	+		EFB2_02439	0.66	-3.0
2,580,870	-		EFB2_02439	0.66	-1.9
2,580,870	-		EFB2_02439	0.66	-0.4
2,580,880	+		EFB2_02439	0.67	-1.1
2,580,956	+		EFB2_02439	0.72	+0.7
2,580,956	+		EFB2_02439	0.72	-0.9
2,580,956	+		EFB2_02439	0.72	+1.9
2,580,957	-		EFB2_02439	0.72	+2.2
2,580,957	-		EFB2_02439	0.72	-0.4
2,580,961	+		EFB2_02439	0.73	+0.6
2,580,961	+		EFB2_02439	0.73	+1.3
2,580,961	+		EFB2_02439	0.73	+2.4
2,580,961	+		EFB2_02439	0.73	-2.0
2,580,961	+		EFB2_02439	0.73	+0.2
2,580,961	+		EFB2_02439	0.73	+0.3
2,580,961	+		EFB2_02439	0.73	-0.3
2,580,961	+		EFB2_02439	0.73	-0.4
2,580,962	-		EFB2_02439	0.73	-1.1
2,580,962	-		EFB2_02439	0.73	-0.4
2,580,962	-		EFB2_02439	0.73	-0.6
2,580,962	-		EFB2_02439	0.73	-0.7
2,580,988	+		EFB2_02439	0.75	+1.2
2,581,072	+		EFB2_02439	0.80	+2.9
2,581,072	+		EFB2_02439	0.80	+0.6
2,581,072	+		EFB2_02439	0.80	-1.5
2,581,072	+		EFB2_02439	0.80	-1.3
2,581,072	+		EFB2_02439	0.80	+0.4
2,581,073	-		EFB2_02439	0.80	-0.2
2,581,073	-		EFB2_02439	0.80	+1.1
2,581,073	-		EFB2_02439	0.80	+1.4
2,581,083	+		EFB2_02439	0.81	-0.1
2,581,117	+		EFB2_02439	0.83	+0.1
2,581,117	+		EFB2_02439	0.83	+2.2
2,581,118	-		EFB2_02439	0.83	+2.0
2,581,130	+		EFB2_02439	0.84	-0.9
2,581,130	+		EFB2_02439	0.84	-1.3
2,581,166	+		EFB2_02439	0.87	-1.4
2,581,167	-		EFB2_02439	0.87	-0.6
2,581,225	+				-0.0
2,581,225	+				-1.3
2,581,225	+				-1.5
2,581,225	+				+0.1
2,581,225	+				-1.0
2,581,225	+				-1.1
2,581,226	-				+2.3
2,581,298	-				-0.9
2,581,341	+				+0.3
2,581,341	+				-1.1
2,581,341	+				+0.3
2,581,341	+				-1.3
2,581,341	+				+2.1
2,581,355	+				-1.0
2,581,355	+				+1.3
2,581,355	+				+0.9
2,581,355	+				-1.5
2,581,355	+				+1.1
2,581,355	+				+0.9
2,581,355	+				+2.6
2,581,355	+				-2.5
2,581,355	+				+1.2
2,581,356	-				+0.9
2,581,356	-				+1.1
2,581,356	-				+2.0
2,581,356	-				-0.6
2,581,358	+				+0.6
2,581,358	+				-0.1
2,581,358	+				-2.2
2,581,359	-				+1.4
2,581,388	+				+0.1
2,581,388	+				+2.4
2,581,388	+				+0.1
2,581,388	+				-0.6
2,581,388	+				-1.5
2,581,389	-				+0.6
2,581,389	-				+0.7
2,581,399	-				+0.1
2,581,415	+				-0.7
2,581,416	-				+2.0
2,581,426	-				-1.1
2,581,426	-				-1.5
2,581,443	+				-0.9
2,581,456	+				-0.7
2,581,465	+				+2.4
2,581,466	-				+0.4
2,581,466	-				-1.1
2,581,466	-				+0.7
2,581,466	-				+0.0
2,581,466	-				-1.7
2,581,466	-				-0.1
2,581,466	-				-0.4
2,581,466	-				-2.6
2,581,477	+				-0.6
2,581,477	+				-0.6
2,581,477	+				+2.1
2,581,478	-				+2.8
2,581,478	-				-0.6
2,581,478	-				+1.3
2,581,478	-				-0.4
2,581,478	-				+0.9
2,581,484	+				+1.7
2,581,488	+				+1.4
2,581,488	+				+2.3
2,581,488	+				-2.0
2,581,488	+				+2.1
2,581,488	+				-0.3
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