Strain Fitness in Escherichia fergusonii Becca around EFB2_02270

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,404,917	-		EFB2_02269	0.25	-1.8
2,404,917	-		EFB2_02269	0.25	-1.2
2,404,977	-		EFB2_02269	0.31	-0.5
2,405,067	-		EFB2_02269	0.41	+0.6
2,405,081	+		EFB2_02269	0.42	+1.3
2,405,081	+		EFB2_02269	0.42	-1.7
2,405,082	-		EFB2_02269	0.42	+1.4
2,405,082	-		EFB2_02269	0.42	+0.9
2,405,082	-		EFB2_02269	0.42	-0.7
2,405,103	+		EFB2_02269	0.45	-0.5
2,405,104	-		EFB2_02269	0.45	-0.7
2,405,104	-		EFB2_02269	0.45	-1.3
2,405,211	+		EFB2_02269	0.56	-0.6
2,405,212	-		EFB2_02269	0.56	+1.8
2,405,212	-		EFB2_02269	0.56	+0.1
2,405,212	-		EFB2_02269	0.56	-0.7
2,405,280	+		EFB2_02269	0.64	-1.0
2,405,281	-		EFB2_02269	0.64	-0.6
2,405,308	+		EFB2_02269	0.67	+3.0
2,405,308	+		EFB2_02269	0.67	+0.8
2,405,309	-		EFB2_02269	0.67	+0.4
2,405,334	+		EFB2_02269	0.69	+0.3
2,405,334	+		EFB2_02269	0.69	+1.7
2,405,334	+		EFB2_02269	0.69	+0.1
2,405,334	+		EFB2_02269	0.69	+1.7
2,405,334	+		EFB2_02269	0.69	+2.6
2,405,334	+		EFB2_02269	0.69	+0.7
2,405,334	+		EFB2_02269	0.69	+0.4
2,405,334	+		EFB2_02269	0.69	+1.4
2,405,334	+		EFB2_02269	0.69	-0.4
2,405,334	+		EFB2_02269	0.69	+2.1
2,405,334	+		EFB2_02269	0.69	-1.7
2,405,334	+		EFB2_02269	0.69	-0.2
2,405,334	+		EFB2_02269	0.69	-0.8
2,405,334	+		EFB2_02269	0.69	-2.5
2,405,334	+		EFB2_02269	0.69	-0.4
2,405,334	+		EFB2_02269	0.69	-0.6
2,405,334	+		EFB2_02269	0.69	+0.8
2,405,334	+		EFB2_02269	0.69	+0.8
2,405,334	+		EFB2_02269	0.69	-1.2
2,405,334	+		EFB2_02269	0.69	+0.4
2,405,334	+		EFB2_02269	0.69	+0.1
2,405,334	+		EFB2_02269	0.69	+0.8
2,405,334	+		EFB2_02269	0.69	-1.9
2,405,334	+		EFB2_02269	0.69	-1.2
2,405,334	+		EFB2_02269	0.69	+0.3
2,405,334	+		EFB2_02269	0.69	-2.0
2,405,334	+		EFB2_02269	0.69	+1.0
2,405,334	+		EFB2_02269	0.69	+2.4
2,405,334	+		EFB2_02269	0.69	-0.4
2,405,334	+		EFB2_02269	0.69	+2.6
2,405,334	+		EFB2_02269	0.69	+0.1
2,405,334	+		EFB2_02269	0.69	+0.3
2,405,334	+		EFB2_02269	0.69	+0.3
2,405,334	+		EFB2_02269	0.69	+1.4
2,405,335	-		EFB2_02269	0.69	-0.6
2,405,335	-		EFB2_02269	0.69	+0.1
2,405,335	-		EFB2_02269	0.69	+1.5
2,405,335	-		EFB2_02269	0.69	-1.7
2,405,335	-		EFB2_02269	0.69	+0.6
2,405,335	-		EFB2_02269	0.69	-2.0
2,405,335	-		EFB2_02269	0.69	-0.2
2,405,335	-		EFB2_02269	0.69	-1.4
2,405,335	-		EFB2_02269	0.69	-2.1
2,405,335	-		EFB2_02269	0.69	+1.2
2,405,335	-		EFB2_02269	0.69	-1.0
2,405,335	-		EFB2_02269	0.69	+2.8
2,405,335	-		EFB2_02269	0.69	-2.0
2,405,335	-		EFB2_02269	0.69	+1.2
2,405,335	-		EFB2_02269	0.69	-3.1
2,405,335	-		EFB2_02269	0.69	-1.6
2,405,335	-		EFB2_02269	0.69	+0.3
2,405,335	-		EFB2_02269	0.69	+2.2
2,405,335	-		EFB2_02269	0.69	-1.7
2,405,335	-		EFB2_02269	0.69	+1.4
2,405,335	-		EFB2_02269	0.69	-0.6
2,405,335	-		EFB2_02269	0.69	+3.4
2,405,335	-		EFB2_02269	0.69	-0.8
2,405,335	-		EFB2_02269	0.69	-0.7
2,405,335	-		EFB2_02269	0.69	+1.9
2,405,335	-		EFB2_02269	0.69	-1.4
2,405,335	-		EFB2_02269	0.69	-1.2
2,405,335	-		EFB2_02269	0.69	-0.9
2,405,335	-		EFB2_02269	0.69	+1.2
2,405,335	-		EFB2_02269	0.69	+0.5
2,405,335	-		EFB2_02269	0.69	-0.4
2,405,335	-		EFB2_02269	0.69	+0.2
2,405,335	-		EFB2_02269	0.69	-2.2
2,405,335	-		EFB2_02269	0.69	-1.4
2,405,370	+		EFB2_02269	0.73	-0.2
2,405,370	+		EFB2_02269	0.73	+1.8
2,405,370	+		EFB2_02269	0.73	-0.2
2,405,370	+		EFB2_02269	0.73	+1.4
2,405,371	-		EFB2_02269	0.73	+1.4
2,405,371	-		EFB2_02269	0.73	-1.3
2,405,371	-		EFB2_02269	0.73	-3.0
2,405,371	-		EFB2_02269	0.73	-1.0
2,405,371	-		EFB2_02269	0.73	-1.8
2,405,371	-		EFB2_02269	0.73	-0.9
2,405,371	-		EFB2_02269	0.73	+1.0
2,405,371	-		EFB2_02269	0.73	+0.0
2,405,375	+		EFB2_02269	0.74	+1.4
2,405,376	-		EFB2_02269	0.74	-1.0
2,405,603	+				-1.3
2,405,603	+				+1.1
2,405,604	-				-1.7
2,405,604	-				+1.2
2,405,604	-				-1.4
2,405,604	-				+0.6
2,405,604	-				+0.7
2,405,604	-				-2.4
2,405,604	-				-1.3
2,405,604	-				-0.4
2,405,605	+				-0.9
2,405,606	-				+2.0
2,405,606	-				-0.2
2,405,606	-				-0.4
2,405,606	-				+2.1
2,405,606	-				-0.7
2,405,606	-				-1.0
2,405,606	-				-1.3
2,405,606	-				+3.0
2,405,609	+				-1.6
2,405,609	+				+0.0
2,405,609	+				+0.3
2,405,609	+				+0.6
2,405,609	+				+0.0
2,405,609	+				-0.1
2,405,609	+				+1.0
2,405,609	+				+0.8
2,405,609	+				-0.7
2,405,609	+				-0.2
2,405,609	+				-0.7
2,405,609	+				+0.6
2,405,609	+				-1.5
2,405,609	+				-0.4
2,405,609	+				-2.0
2,405,609	+				+1.3
2,405,609	+				+1.4
2,405,609	+				-1.5
2,405,609	+				-0.9
2,405,609	+				-0.4
2,405,609	+				+0.8
2,405,610	-				-1.6
2,405,610	-				+0.4
2,405,610	-				-1.4
2,405,610	-				-2.2
2,405,610	-				+1.9
2,405,610	-				-0.7
2,405,610	-				+0.8
2,405,610	-				+1.2
2,405,610	-				+0.0
2,405,610	-				+1.8
2,405,610	-				-1.1
2,405,610	-				-0.4
2,405,610	-				-1.5
2,405,610	-				-1.5
2,405,610	-				-0.0
2,405,610	-				+0.2
2,405,610	-				+0.1
2,405,610	-				+2.0
2,405,610	-				+1.3
2,405,610	-				-1.9
2,405,610	-				-0.6
2,405,610	-				-0.4
2,405,610	-				+0.4
2,405,610	-				+0.6
2,405,613	+				-1.6
2,405,613	+				+2.6
2,405,613	+				+2.1
2,405,613	+				-1.8
2,405,614	-				+1.9
2,405,614	-				+1.0
2,405,614	-				-1.9
2,405,614	-				+1.0
2,405,614	-				+0.4
2,405,614	-				-0.4
2,405,614	-				-1.9
2,405,614	-				+3.0
2,405,614	-				+2.8
2,405,614	-				+0.6
2,405,630	-				-0.0
2,405,630	-				-1.2
2,405,631	+				+1.1
2,405,631	+				+0.9
2,405,631	+				+0.4
2,405,632	-				+0.0
2,405,632	-				+0.0
2,405,632	-				-1.0
2,405,677	+				-2.0
2,405,684	-				+1.8
2,405,701	+				+2.7
2,405,701	+				-0.7
2,405,701	+				+0.2
2,405,702	-				-0.5
2,405,719	+				+1.6
2,405,720	-				-0.2
2,405,720	-				+2.4
2,405,720	-				-0.0
2,405,720	-				-1.8
2,405,724	-				+1.1
2,405,725	+				-2.2
2,405,725	+				-1.9
2,405,726	-				-1.7
2,405,726	-				+1.1
2,405,726	-				+1.6
2,405,727	+				-1.6
2,405,727	+				+1.6
2,405,730	-				-1.6
2,405,759	-				+0.0
2,405,775	-				-1.4
2,405,780	+				+1.6
2,405,780	+				+1.8
2,405,780	+				+0.2
2,405,780	+				-1.9
2,405,781	-				-1.5
2,405,781	-				+0.5
2,405,788	+				+2.8
2,405,788	+				+0.8
2,405,788	+				-2.4
2,405,788	+				-0.6
2,405,789	-				+1.3
2,405,789	-				+1.2
2,405,789	-				+0.7
2,405,789	-				+0.7
2,405,789	-				-0.5
2,405,789	-				+0.5
2,405,789	-				-1.0
2,405,793	+				-0.9
2,405,793	+				+0.8
2,405,807	+				+0.3
2,405,807	+				-1.0
2,405,818	-				-1.7
2,405,835	-				+1.1
2,405,842	-				-0.2
2,405,847	+				-1.7
2,405,848	-				-1.6
2,405,888	+				-2.2
2,405,888	+				-0.5
2,405,888	+				-0.7
2,405,888	+				+2.2
2,405,888	+				-1.4
2,405,888	+				-3.2
2,405,889	-				+0.6
2,405,889	-				-1.5
2,405,901	+				-0.9
2,405,901	+				+0.2
2,405,901	+				+0.8
2,405,901	+				-2.7
2,405,902	-				-0.7
2,405,902	-				-0.2
2,405,936	+				+1.6
2,405,936	+				+0.4
2,405,936	+				+0.4
2,405,936	+				+0.5
2,405,936	+				+0.7
2,405,936	+				+0.2
2,405,936	+				-1.4
2,405,936	+				-0.4
2,405,936	+				+1.5
2,405,936	+				+1.4
2,405,936	+				+0.4
2,405,936	+				-2.4
2,405,937	-				+0.8
2,405,937	-				+2.4
2,405,937	-				-0.9
2,405,937	-				-1.7
2,405,937	-				+1.5
2,405,994	-		EFB2_02270	0.12	+0.6
2,406,039	-		EFB2_02270	0.18	+1.6
2,406,054	+		EFB2_02270	0.20	-1.4
2,406,054	+		EFB2_02270	0.20	-0.8
2,406,055	-		EFB2_02270	0.20	-2.5
2,406,055	-		EFB2_02270	0.20	+0.3
2,406,092	+		EFB2_02270	0.25	+1.5
2,406,092	+		EFB2_02270	0.25	-1.0
2,406,159	-		EFB2_02270	0.34	-1.9
2,406,161	+		EFB2_02270	0.34	+0.1
2,406,161	+		EFB2_02270	0.34	-2.3
2,406,161	+		EFB2_02270	0.34	-0.6
2,406,161	+		EFB2_02270	0.34	-1.2
2,406,161	+		EFB2_02270	0.34	-1.7
2,406,161	+		EFB2_02270	0.34	+0.8
2,406,161	+		EFB2_02270	0.34	+1.0
2,406,161	+		EFB2_02270	0.34	+1.4
2,406,161	+		EFB2_02270	0.34	-2.1
2,406,161	+		EFB2_02270	0.34	-0.2
2,406,161	+		EFB2_02270	0.34	+2.0
2,406,161	+		EFB2_02270	0.34	+0.5
2,406,161	+		EFB2_02270	0.34	-2.8
2,406,161	+		EFB2_02270	0.34	-2.0
2,406,162	-		EFB2_02270	0.34	-0.7
2,406,162	-		EFB2_02270	0.34	+1.5
2,406,162	-		EFB2_02270	0.34	-1.2
2,406,170	+		EFB2_02270	0.35	+0.2
2,406,170	+		EFB2_02270	0.35	+1.1
2,406,170	+		EFB2_02270	0.35	-1.7
2,406,170	+		EFB2_02270	0.35	-1.8
2,406,170	+		EFB2_02270	0.35	+1.7
2,406,170	+		EFB2_02270	0.35	+0.2
2,406,170	+		EFB2_02270	0.35	-0.9
2,406,171	-		EFB2_02270	0.35	-0.7
2,406,171	-		EFB2_02270	0.35	+0.7
2,406,171	-		EFB2_02270	0.35	+0.4
2,406,195	+		EFB2_02270	0.38	-3.3
2,406,212	+		EFB2_02270	0.41	+0.6
2,406,234	+		EFB2_02270	0.43	+0.6
2,406,235	-		EFB2_02270	0.44	+0.1
2,406,235	-		EFB2_02270	0.44	-0.4
2,406,235	-		EFB2_02270	0.44	-1.0
2,406,241	-		EFB2_02270	0.44	+0.5
2,406,244	+		EFB2_02270	0.45	+0.6
2,406,244	+		EFB2_02270	0.45	-1.3
2,406,245	-		EFB2_02270	0.45	-0.9
2,406,276	+		EFB2_02270	0.49	+1.3
2,406,276	+		EFB2_02270	0.49	+0.4
2,406,276	+		EFB2_02270	0.49	-2.1
2,406,276	+		EFB2_02270	0.49	+2.4
2,406,277	-		EFB2_02270	0.49	-0.6
2,406,277	-		EFB2_02270	0.49	+0.1
2,406,278	+		EFB2_02270	0.49	+1.1
2,406,278	+		EFB2_02270	0.49	-1.0
2,406,344	-		EFB2_02270	0.58	+2.6
2,406,344	-		EFB2_02270	0.58	+0.6
2,406,390	+		EFB2_02270	0.64	-1.3
2,406,390	+		EFB2_02270	0.64	+0.4
2,406,390	+		EFB2_02270	0.64	+0.7
2,406,390	+		EFB2_02270	0.64	+1.2
2,406,390	+		EFB2_02270	0.64	-0.3
2,406,390	+		EFB2_02270	0.64	-0.2
2,406,390	+		EFB2_02270	0.64	-1.3
2,406,390	+		EFB2_02270	0.64	+1.8
2,406,390	+		EFB2_02270	0.64	+2.7
2,406,390	+		EFB2_02270	0.64	-0.7
2,406,390	+		EFB2_02270	0.64	-0.4
2,406,390	+		EFB2_02270	0.64	-0.6
2,406,390	+		EFB2_02270	0.64	+1.2
2,406,390	+		EFB2_02270	0.64	+1.4
2,406,391	-		EFB2_02270	0.64	-0.4
2,406,391	-		EFB2_02270	0.64	-2.9
2,406,391	-		EFB2_02270	0.64	+4.6
2,406,393	-		EFB2_02270	0.64	+1.4
2,406,426	+		EFB2_02270	0.69	+1.9
2,406,426	+		EFB2_02270	0.69	+1.0
2,406,426	+		EFB2_02270	0.69	-1.3
2,406,441	+		EFB2_02270	0.71	+0.3
2,406,441	+		EFB2_02270	0.71	-1.7
2,406,441	+		EFB2_02270	0.71	+0.3
2,406,441	+		EFB2_02270	0.71	-0.2
2,406,441	+		EFB2_02270	0.71	+0.9
2,406,441	+		EFB2_02270	0.71	+0.4
2,406,441	+		EFB2_02270	0.71	+0.6
2,406,441	+		EFB2_02270	0.71	-1.0
2,406,441	+		EFB2_02270	0.71	+0.3
2,406,441	+		EFB2_02270	0.71	-0.5
2,406,441	+		EFB2_02270	0.71	+0.7
2,406,442	-		EFB2_02270	0.71	+2.4
2,406,442	-		EFB2_02270	0.71	+2.0
2,406,442	-		EFB2_02270	0.71	+0.4
2,406,442	-		EFB2_02270	0.71	-0.7
2,406,442	-		EFB2_02270	0.71	-1.3
2,406,442	-		EFB2_02270	0.71	+0.1
2,406,442	-		EFB2_02270	0.71	-0.0
2,406,442	-		EFB2_02270	0.71	+1.4
2,406,473	+		EFB2_02270	0.75	+1.0
2,406,532	+		EFB2_02270	0.83	-0.0
2,406,532	+		EFB2_02270	0.83	-0.8
2,406,542	+		EFB2_02270	0.84	+0.5
2,406,542	+		EFB2_02270	0.84	-0.1
2,406,542	+		EFB2_02270	0.84	-1.7
2,406,542	+		EFB2_02270	0.84	+0.2
2,406,542	+		EFB2_02270	0.84	-1.4
2,406,543	-		EFB2_02270	0.84	+2.1
2,406,543	-		EFB2_02270	0.84	+2.4
2,406,543	-		EFB2_02270	0.84	+1.3
2,406,545	+		EFB2_02270	0.84	-0.4
2,406,545	+		EFB2_02270	0.84	-0.5
2,406,546	-		EFB2_02270	0.85	-1.3
2,406,546	-		EFB2_02270	0.85	+1.1
2,406,546	-		EFB2_02270	0.85	-1.2
2,406,573	+		EFB2_02270	0.88	+0.3
2,406,573	+		EFB2_02270	0.88	+1.4
2,406,573	+		EFB2_02270	0.88	-2.1
2,406,573	+		EFB2_02270	0.88	+1.2
2,406,573	+		EFB2_02270	0.88	-0.7
2,406,620	+				+0.3
2,406,620	+				+2.0
2,406,620	+				+0.4
2,406,621	-				+0.6
2,406,640	+				-0.2
2,406,640	+				-1.3
2,406,651	+				+0.5
2,406,651	+				+1.9
2,406,660	+				+0.0
2,406,660	+				+0.5
2,406,660	+				+0.8
2,406,660	+				-2.2
2,406,660	+				-0.2
2,406,660	+				+0.2
2,406,660	+				-2.4
2,406,660	+				+1.1
2,406,683	+				+0.1
2,406,683	+				-1.2
2,406,684	-				+0.6
2,406,742	+		EFB2_02271	0.25	+0.2
2,406,742	+		EFB2_02271	0.25	-0.6
2,406,742	+		EFB2_02271	0.25	-1.3
2,406,742	+		EFB2_02271	0.25	+0.1
2,406,742	+		EFB2_02271	0.25	+1.2
2,406,742	+		EFB2_02271	0.25	-1.3
2,406,742	+		EFB2_02271	0.25	+0.7
2,406,742	+		EFB2_02271	0.25	+1.3
2,406,743	-		EFB2_02271	0.26	+1.3
2,406,743	-		EFB2_02271	0.26	-1.3
2,406,743	-		EFB2_02271	0.26	+1.4
2,406,743	-		EFB2_02271	0.26	-0.2
2,406,743	-		EFB2_02271	0.26	+1.6
2,406,743	-		EFB2_02271	0.26	+1.0
2,406,743	-		EFB2_02271	0.26	-2.4
2,406,753	+		EFB2_02271	0.35	-0.9
2,406,753	+		EFB2_02271	0.35	+0.0
2,406,753	+		EFB2_02271	0.35	+1.8
2,406,753	+		EFB2_02271	0.35	+1.6
2,406,753	+		EFB2_02271	0.35	-0.4
2,406,754	-		EFB2_02271	0.36	-2.2
2,406,754	-		EFB2_02271	0.36	+0.4
2,406,822	+				-0.2
2,406,822	+				-1.0
2,406,823	-				-0.0
2,406,823	-				-2.0
2,406,837	+				-0.9
2,406,837	+				-0.3
2,406,837	+				-1.0
2,406,838	-				-0.6
2,406,838	-				-0.2
2,406,838	-				-0.8
2,406,838	-				+0.2
2,406,838	-				-1.5
2,406,838	-				+1.4
2,406,838	-				-1.9
2,406,838	-				-2.6
2,406,838	-				+1.7
2,406,900	+				+0.4
2,406,900	+				+0.2
2,406,900	+				-2.0
2,406,900	+				-0.9
2,406,901	-				+1.3
2,406,901	-				-0.4
2,406,901	-				-0.6
2,406,901	-				-0.3
2,406,922	-				+4.7
2,406,922	-				+2.7
2,406,922	-				-1.5
2,406,922	-				-2.2
2,406,922	-				+1.0
2,406,960	-				+0.8
2,406,963	+				+1.9
2,406,977	+				-1.0
2,406,978	-				+0.3
2,406,982	+				+0.8
2,407,000	+				-0.3
2,407,001	-				+2.4
2,407,008	+				+1.8
2,407,009	-				+0.8
2,407,050	+				-1.5
2,407,051	-				-0.2
2,407,051	-				+1.8
2,407,060	+				+0.6
2,407,063	+				+0.7
2,407,063	+				-1.6
2,407,063	+				+0.8
2,407,089	-				-1.6
2,407,102	-				-0.2
2,407,152	+				-0.2
2,407,153	-				-0.0
2,407,203	-				-1.9
2,407,204	+				-0.2
2,407,205	-				+0.1
2,407,206	+				+0.9
2,407,207	-				-0.4
2,407,250	+				-2.9
2,407,251	-				+0.5
2,407,251	-				+1.4
2,407,253	-				-1.7
2,407,270	+				+0.2
2,407,373	+				+0.3
2,407,373	+				-1.6
2,407,374	-				+0.3
2,407,374	-				-1.0
2,407,374	-				+1.4
2,407,374	-				+2.2
2,407,418	+				+0.1
2,407,438	-				+0.7
2,407,438	-				+1.4
2,407,492	-				-2.2
2,407,551	+				+2.4
2,407,551	+				+0.9
2,407,552	-				-0.4
2,407,552	-				+0.8
2,407,552	-				+0.1
2,407,564	+				+0.6
2,407,591	-				-0.2