Strain Fitness in Escherichia fergusonii Becca around EFB2_02050

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,200,917	+		EFB2_02049	0.33	-2.0
2,200,917	+		EFB2_02049	0.33	+2.9
2,200,917	+		EFB2_02049	0.33	-0.5
2,200,918	-		EFB2_02049	0.33	+0.3
2,200,918	-		EFB2_02049	0.33	+1.6
2,200,918	-		EFB2_02049	0.33	+2.3
2,200,918	-		EFB2_02049	0.33	-2.2
2,200,918	-		EFB2_02049	0.33	+3.3
2,200,918	-		EFB2_02049	0.33	-0.9
2,200,960	+		EFB2_02049	0.36	+0.7
2,200,960	+		EFB2_02049	0.36	+3.5
2,200,960	+		EFB2_02049	0.36	+1.6
2,200,960	+		EFB2_02049	0.36	-0.4
2,200,960	+		EFB2_02049	0.36	-1.3
2,200,960	+		EFB2_02049	0.36	+1.1
2,200,960	+		EFB2_02049	0.36	-0.0
2,200,960	+		EFB2_02049	0.36	-0.0
2,200,960	+		EFB2_02049	0.36	+0.0
2,200,960	+		EFB2_02049	0.36	+0.4
2,200,960	+		EFB2_02049	0.36	-1.2
2,200,961	-		EFB2_02049	0.36	+2.6
2,200,961	-		EFB2_02049	0.36	-1.6
2,200,961	-		EFB2_02049	0.36	+2.3
2,200,961	-		EFB2_02049	0.36	-0.9
2,200,961	-		EFB2_02049	0.36	+1.5
2,200,961	-		EFB2_02049	0.36	-0.6
2,200,961	-		EFB2_02049	0.36	-3.2
2,200,961	-		EFB2_02049	0.36	-1.1
2,200,961	-		EFB2_02049	0.36	+1.0
2,200,961	-		EFB2_02049	0.36	+2.7
2,200,961	-		EFB2_02049	0.36	+1.1
2,200,961	-		EFB2_02049	0.36	+1.2
2,200,961	-		EFB2_02049	0.36	-1.0
2,200,961	-		EFB2_02049	0.36	+1.0
2,200,961	-		EFB2_02049	0.36	-0.0
2,200,961	-		EFB2_02049	0.36	+0.5
2,200,961	-		EFB2_02049	0.36	+0.1
2,200,961	-		EFB2_02049	0.36	+0.8
2,200,961	-		EFB2_02049	0.36	+1.6
2,200,990	+		EFB2_02049	0.38	+1.7
2,200,990	+		EFB2_02049	0.38	+0.4
2,200,991	-		EFB2_02049	0.38	+0.9
2,200,991	-		EFB2_02049	0.38	-0.6
2,200,991	-		EFB2_02049	0.38	-1.5
2,200,991	-		EFB2_02049	0.38	+1.1
2,201,050	-		EFB2_02049	0.42	+1.0
2,201,073	+		EFB2_02049	0.44	+1.3
2,201,074	-		EFB2_02049	0.44	+0.3
2,201,074	-		EFB2_02049	0.44	-0.5
2,201,223	+		EFB2_02049	0.54	+1.5
2,201,224	-		EFB2_02049	0.54	+0.2
2,201,224	-		EFB2_02049	0.54	-1.3
2,201,249	-		EFB2_02049	0.56	+3.3
2,201,281	+		EFB2_02049	0.58	+1.5
2,201,282	-		EFB2_02049	0.58	+1.0
2,201,291	+		EFB2_02049	0.59	-1.0
2,201,319	+		EFB2_02049	0.61	+3.4
2,201,320	-		EFB2_02049	0.61	+1.6
2,201,330	-		EFB2_02049	0.62	+1.1
2,201,331	+		EFB2_02049	0.62	-0.5
2,201,331	+		EFB2_02049	0.62	+1.4
2,201,331	+		EFB2_02049	0.62	+0.8
2,201,332	-		EFB2_02049	0.62	-1.3
2,201,332	-		EFB2_02049	0.62	-0.8
2,201,371	+		EFB2_02049	0.64	-2.7
2,201,371	+		EFB2_02049	0.64	-0.2
2,201,371	+		EFB2_02049	0.64	-2.5
2,201,371	+		EFB2_02049	0.64	-0.2
2,201,372	-		EFB2_02049	0.64	-1.5
2,201,372	-		EFB2_02049	0.64	-0.3
2,201,416	-		EFB2_02049	0.68	+0.4
2,201,421	+		EFB2_02049	0.68	-0.4
2,201,421	+		EFB2_02049	0.68	-1.3
2,201,421	+		EFB2_02049	0.68	-1.8
2,201,421	+		EFB2_02049	0.68	+1.3
2,201,422	-		EFB2_02049	0.68	-1.0
2,201,425	+		EFB2_02049	0.68	+0.5
2,201,425	+		EFB2_02049	0.68	+0.8
2,201,425	+		EFB2_02049	0.68	-1.0
2,201,426	-		EFB2_02049	0.68	-2.1
2,201,435	+		EFB2_02049	0.69	+1.0
2,201,436	-		EFB2_02049	0.69	+2.9
2,201,455	+		EFB2_02049	0.70	-1.9
2,201,455	+		EFB2_02049	0.70	+0.1
2,201,455	+		EFB2_02049	0.70	+1.3
2,201,456	-		EFB2_02049	0.70	-0.0
2,201,478	+		EFB2_02049	0.72	-1.9
2,201,484	-		EFB2_02049	0.72	+0.6
2,201,484	-		EFB2_02049	0.72	+0.5
2,201,503	+		EFB2_02049	0.74	+0.2
2,201,504	-		EFB2_02049	0.74	-0.5
2,201,520	-		EFB2_02049	0.75	-0.1
2,201,563	+		EFB2_02049	0.78	+0.1
2,201,563	+		EFB2_02049	0.78	+0.4
2,201,563	+		EFB2_02049	0.78	+0.6
2,201,563	+		EFB2_02049	0.78	+0.1
2,201,563	+		EFB2_02049	0.78	+1.3
2,201,563	+		EFB2_02049	0.78	-0.5
2,201,563	+		EFB2_02049	0.78	-0.7
2,201,563	+		EFB2_02049	0.78	-0.2
2,201,563	+		EFB2_02049	0.78	-1.5
2,201,563	+		EFB2_02049	0.78	+1.0
2,201,563	+		EFB2_02049	0.78	-0.3
2,201,563	+		EFB2_02049	0.78	-0.8
2,201,564	-		EFB2_02049	0.78	+0.7
2,201,564	-		EFB2_02049	0.78	+0.8
2,201,564	-		EFB2_02049	0.78	+2.6
2,201,564	-		EFB2_02049	0.78	+0.3
2,201,564	-		EFB2_02049	0.78	-0.3
2,201,564	-		EFB2_02049	0.78	-1.5
2,201,564	-		EFB2_02049	0.78	-1.0
2,201,564	-		EFB2_02049	0.78	-0.6
2,201,564	-		EFB2_02049	0.78	-0.0
2,201,637	-		EFB2_02049	0.83	-1.6
2,201,649	-		EFB2_02049	0.84	+0.8
2,201,656	-		EFB2_02049	0.84	+1.1
2,201,662	+		EFB2_02049	0.85	+1.3
2,201,663	-		EFB2_02049	0.85	-2.4
2,201,706	+		EFB2_02049	0.88	-2.0
2,201,706	+		EFB2_02049	0.88	-2.3
2,201,706	+		EFB2_02049	0.88	-2.3
2,201,706	+		EFB2_02049	0.88	+1.3
2,201,706	+		EFB2_02049	0.88	-0.4
2,201,706	+		EFB2_02049	0.88	+4.9
2,201,706	+		EFB2_02049	0.88	-0.4
2,201,706	+		EFB2_02049	0.88	+0.3
2,201,706	+		EFB2_02049	0.88	-0.0
2,201,706	+		EFB2_02049	0.88	-0.3
2,201,706	+		EFB2_02049	0.88	+1.0
2,201,707	-		EFB2_02049	0.88	+1.6
2,201,707	-		EFB2_02049	0.88	+3.3
2,201,707	-		EFB2_02049	0.88	+1.8
2,201,707	-		EFB2_02049	0.88	-0.4
2,201,707	-		EFB2_02049	0.88	-0.3
2,201,707	-		EFB2_02049	0.88	-0.5
2,201,707	-		EFB2_02049	0.88	+0.6
2,201,724	+		EFB2_02049	0.89	-3.0
2,201,724	+		EFB2_02049	0.89	+2.3
2,201,724	+		EFB2_02049	0.89	-2.0
2,201,724	+		EFB2_02049	0.89	+2.7
2,201,724	+		EFB2_02049	0.89	-0.3
2,201,724	+		EFB2_02049	0.89	-2.1
2,201,724	+		EFB2_02049	0.89	+1.3
2,201,724	+		EFB2_02049	0.89	+0.6
2,201,724	+		EFB2_02049	0.89	+1.1
2,201,725	-		EFB2_02049	0.89	-3.0
2,201,725	-		EFB2_02049	0.89	+0.2
2,201,725	-		EFB2_02049	0.89	+1.2
2,201,725	-		EFB2_02049	0.89	-2.1
2,201,725	-		EFB2_02049	0.89	+1.1
2,201,725	-		EFB2_02049	0.89	-1.7
2,201,769	+				+0.4
2,201,769	+				+0.7
2,201,773	-				+0.2
2,201,797	-				+1.0
2,201,804	+				-1.2
2,201,804	+				-0.3
2,201,805	-				-1.7
2,201,805	-				+1.4
2,201,805	-				-1.6
2,201,805	-				+1.3
2,201,813	+				-2.2
2,201,813	+				-0.3
2,201,813	+				+1.0
2,201,814	-				-1.8
2,201,814	-				-2.2
2,201,856	+				+0.6
2,201,857	-				+2.9
2,201,865	+				+1.2
2,201,865	+				-1.1
2,201,865	+				-0.0
2,201,875	+				-0.1
2,201,875	+				-1.5
2,201,875	+				-3.4
2,201,875	+				+0.3
2,201,876	-				-0.8
2,201,876	-				+0.7
2,201,876	-				+1.0
2,201,876	-				-0.6
2,201,876	-				+0.9
2,201,896	-				-0.9
2,201,905	+				+0.4
2,201,905	+				+0.9
2,201,905	+				-0.6
2,201,906	-				+2.0
2,201,906	-				-0.7
2,201,906	-				+1.2
2,201,906	-				+1.2
2,201,931	+		EFB2_02050	0.11	-1.7
2,201,931	+		EFB2_02050	0.11	-1.4
2,201,931	+		EFB2_02050	0.11	-1.8
2,201,932	-		EFB2_02050	0.11	+0.3
2,201,932	-		EFB2_02050	0.11	+0.4
2,202,033	+		EFB2_02050	0.35	+2.3
2,202,033	+		EFB2_02050	0.35	+0.8
2,202,034	-		EFB2_02050	0.35	-0.1
2,202,034	-		EFB2_02050	0.35	-1.6
2,202,034	-		EFB2_02050	0.35	-2.5
2,202,034	-		EFB2_02050	0.35	+1.2
2,202,034	-		EFB2_02050	0.35	-1.2
2,202,034	-		EFB2_02050	0.35	-0.1
2,202,034	-		EFB2_02050	0.35	+0.7
2,202,044	-		EFB2_02050	0.37	-0.1
2,202,044	-		EFB2_02050	0.37	+1.8
2,202,061	-		EFB2_02050	0.41	+0.4
2,202,097	+		EFB2_02050	0.50	-1.8
2,202,097	+		EFB2_02050	0.50	-0.5
2,202,098	-		EFB2_02050	0.50	+1.2
2,202,098	-		EFB2_02050	0.50	+0.3
2,202,098	-		EFB2_02050	0.50	-2.2
2,202,098	-		EFB2_02050	0.50	+1.7
2,202,098	-		EFB2_02050	0.50	+0.8
2,202,102	+		EFB2_02050	0.51	-0.9
2,202,102	+		EFB2_02050	0.51	-0.5
2,202,102	+		EFB2_02050	0.51	-1.4
2,202,103	-		EFB2_02050	0.51	+1.9
2,202,103	-		EFB2_02050	0.51	-0.0
2,202,103	-		EFB2_02050	0.51	+1.2
2,202,103	-		EFB2_02050	0.51	+2.1
2,202,142	+		EFB2_02050	0.60	-0.9
2,202,142	+		EFB2_02050	0.60	-0.4
2,202,166	+		EFB2_02050	0.66	-0.5
2,202,166	+		EFB2_02050	0.66	+1.7
2,202,166	+		EFB2_02050	0.66	-0.5
2,202,167	-		EFB2_02050	0.66	+0.3
2,202,167	-		EFB2_02050	0.66	-2.2
2,202,167	-		EFB2_02050	0.66	+0.7
2,202,167	-		EFB2_02050	0.66	-0.0
2,202,167	-		EFB2_02050	0.66	+2.6
2,202,176	+		EFB2_02050	0.68	+0.1
2,202,176	+		EFB2_02050	0.68	+0.3
2,202,176	+		EFB2_02050	0.68	-0.5
2,202,176	+		EFB2_02050	0.68	-2.7
2,202,177	-		EFB2_02050	0.68	-0.2
2,202,201	+		EFB2_02050	0.74	+0.9
2,202,201	+		EFB2_02050	0.74	+2.3
2,202,201	+		EFB2_02050	0.74	-1.3
2,202,202	-		EFB2_02050	0.74	-1.1
2,202,205	+		EFB2_02050	0.75	+0.5
2,202,206	-		EFB2_02050	0.75	-1.3
2,202,206	-		EFB2_02050	0.75	+0.6
2,202,206	-		EFB2_02050	0.75	-1.4
2,202,224	-		EFB2_02050	0.79	+0.2
2,202,237	+		EFB2_02050	0.82	-1.4
2,202,237	+		EFB2_02050	0.82	+2.3
2,202,237	+		EFB2_02050	0.82	-1.7
2,202,238	-		EFB2_02050	0.83	-1.9
2,202,238	-		EFB2_02050	0.83	-1.2
2,202,238	-		EFB2_02050	0.83	-1.5
2,202,238	-		EFB2_02050	0.83	-0.5
2,202,238	-		EFB2_02050	0.83	+1.8
2,202,238	-		EFB2_02050	0.83	-0.0
2,202,238	-		EFB2_02050	0.83	-0.6
2,202,238	-		EFB2_02050	0.83	+2.3
2,202,242	-		EFB2_02050	0.83	+0.3
2,202,277	-				+3.1
2,202,297	+				-0.9
2,202,297	+				+3.9
2,202,297	+				+0.8
2,202,298	-				-0.0
2,202,303	+				+2.3
2,202,303	+				+0.4
2,202,303	+				-0.1
2,202,303	+				-0.5
2,202,304	-				+1.1
2,202,304	-				-1.2
2,202,304	-				+0.6
2,202,304	-				-1.4
2,202,304	-				+0.7
2,202,304	-				-2.0
2,202,304	-				+0.9
2,202,304	-				-2.1
2,202,305	+				+0.0
2,202,305	+				-0.1
2,202,305	+				-1.5
2,202,305	+				-1.0
2,202,305	+				+0.6
2,202,305	+				+0.6
2,202,305	+				-1.3
2,202,305	+				-1.3
2,202,305	+				+2.0
2,202,305	+				+0.7
2,202,305	+				-0.9
2,202,305	+				-2.4
2,202,305	+				+3.0
2,202,306	-				+1.6
2,202,306	-				-0.7
2,202,306	-				+1.4
2,202,306	-				-1.3
2,202,306	-				-0.3
2,202,306	-				+0.4
2,202,306	-				+1.3
2,202,306	-				-0.0
2,202,306	-				+0.5
2,202,306	-				-1.8
2,202,306	-				-0.0
2,202,306	-				-1.2
2,202,306	-				+1.3
2,202,306	-				-0.1
2,202,306	-				+0.8
2,202,306	-				+0.7
2,202,306	-				-0.1
2,202,306	-				+0.5
2,202,312	+				-0.7
2,202,325	-				-1.2
2,202,348	+				-2.3
2,202,349	-				+0.5
2,202,357	-				-0.3
2,202,363	-				-0.5
2,202,363	-				+0.5
2,202,470	+				-1.5
2,202,474	+				-0.2
2,202,485	-				+1.5
2,202,573	+				-0.7
2,202,573	+				-1.9
2,202,661	-				-0.0
2,202,670	+				-1.3
2,202,670	+				+0.7
2,202,760	-				-1.4
2,202,791	+				+0.9
2,202,791	+				+0.3
2,202,791	+				-2.6
2,202,791	+				-0.5
2,202,791	+				-1.0
2,202,792	-				+0.3
2,202,792	-				-1.7
2,202,800	+				-2.6
2,202,862	+				+1.7
2,202,862	+				-1.9
2,202,862	+				+0.4
2,202,862	+				+1.6
2,202,862	+				+0.8
2,202,862	+				+0.7
2,202,862	+				+0.6
2,202,862	+				+1.2
2,202,862	+				-1.4
2,202,862	+				-0.2
2,202,862	+				+1.3
2,202,862	+				+1.6
2,202,863	-				+1.6
2,202,863	-				+1.7
2,202,863	-				-0.7
2,202,863	-				-0.9
2,202,863	-				+0.7
2,202,863	-				-1.3
2,202,863	-				+1.7
2,202,863	-				-0.7
2,202,863	-				-0.9
2,202,872	+				+1.0
2,202,873	-				-1.3
2,202,882	+				-1.0
2,202,883	-				-1.9
2,202,883	-				+1.7
2,202,883	-				-2.2
2,202,914	+				+0.1
2,202,914	+				+0.7
2,202,914	+				-1.4
2,202,914	+				+0.6
2,202,914	+				-1.1
2,202,914	+				-0.2
2,202,914	+				-1.2
2,202,915	-				+0.7
2,202,915	-				-0.3
2,202,915	-				-1.4
2,202,915	-				+0.1
2,202,915	-				-0.9
2,202,915	-				+2.0
2,202,915	-				-0.7
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