Strain Fitness in Escherichia fergusonii Becca around EFB2_02025

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,180,647	-		EFB2_02023	0.52	+2.7
2,180,647	-		EFB2_02023	0.52	-0.1
2,180,656	+		EFB2_02023	0.53	-1.7
2,180,692	+		EFB2_02023	0.58	+3.0
2,180,692	+		EFB2_02023	0.58	+0.5
2,180,693	-		EFB2_02023	0.58	-1.0
2,180,693	-		EFB2_02023	0.58	-2.3
2,180,711	+		EFB2_02023	0.60	+0.6
2,180,712	-		EFB2_02023	0.61	-1.7
2,180,712	-		EFB2_02023	0.61	+2.8
2,180,712	-		EFB2_02023	0.61	-1.9
2,180,712	-		EFB2_02023	0.61	+2.4
2,180,756	-		EFB2_02023	0.67	+1.4
2,180,756	-		EFB2_02023	0.67	+2.8
2,180,785	-		EFB2_02023	0.71	-0.1
2,180,803	+		EFB2_02023	0.73	-1.9
2,180,803	+		EFB2_02023	0.73	+0.3
2,180,862	+		EFB2_02023	0.81	-0.4
2,180,862	+		EFB2_02023	0.81	-2.1
2,180,862	+		EFB2_02023	0.81	-1.3
2,180,866	-		EFB2_02023	0.82	-0.9
2,180,866	-		EFB2_02023	0.82	-0.9
2,180,866	-		EFB2_02023	0.82	-0.3
2,180,873	+		EFB2_02023	0.83	+3.3
2,180,873	+		EFB2_02023	0.83	-1.3
2,180,873	+		EFB2_02023	0.83	-0.4
2,180,873	+		EFB2_02023	0.83	-0.3
2,180,873	+		EFB2_02023	0.83	-2.0
2,180,873	+		EFB2_02023	0.83	+1.3
2,180,873	+		EFB2_02023	0.83	-0.7
2,180,874	-		EFB2_02023	0.83	-0.5
2,180,874	-		EFB2_02023	0.83	-0.7
2,180,874	-		EFB2_02023	0.83	+1.7
2,180,874	-		EFB2_02023	0.83	-0.9
2,180,874	-		EFB2_02023	0.83	-1.3
2,180,874	-		EFB2_02023	0.83	-0.4
2,180,876	+		EFB2_02023	0.83	+0.1
2,180,876	+		EFB2_02023	0.83	+0.9
2,180,876	+		EFB2_02023	0.83	-2.2
2,180,876	+		EFB2_02023	0.83	-0.6
2,180,946	+				-2.3
2,180,946	+				+1.5
2,180,946	+				-1.0
2,180,947	-				-2.3
2,180,959	+				+1.4
2,180,959	+				+2.3
2,180,959	+				-1.2
2,180,960	-				-0.7
2,180,960	-				-0.1
2,180,962	+				+0.8
2,180,963	-				-0.6
2,180,991	+				-1.0
2,180,991	+				-1.2
2,180,991	+				-2.4
2,180,991	+				-2.3
2,180,991	+				+0.9
2,180,991	+				-0.9
2,180,991	+				-1.7
2,180,991	+				-0.3
2,180,991	+				+2.1
2,180,991	+				-0.6
2,180,991	+				+0.3
2,180,991	+				-2.2
2,180,992	-				-0.7
2,180,992	-				-0.1
2,180,992	-				+0.7
2,180,992	-				+0.3
2,180,992	-				-0.2
2,180,992	-				-1.1
2,180,992	-				-1.9
2,180,992	-				-0.7
2,180,992	-				-0.6
2,180,992	-				+0.3
2,180,993	+				+0.6
2,180,993	+				+0.7
2,180,993	+				+0.8
2,180,993	+				-2.7
2,180,993	+				-0.3
2,180,993	+				-1.3
2,180,993	+				-1.7
2,180,994	-				+2.7
2,180,994	-				-1.7
2,180,994	-				+1.4
2,180,994	-				-1.2
2,180,994	-				+2.3
2,180,994	-				+0.3
2,181,002	+				-3.1
2,181,002	+				-0.9
2,181,002	+				-0.8
2,181,003	-				+1.5
2,181,016	+				-1.0
2,181,039	+				+0.9
2,181,039	+				-1.6
2,181,039	+				+2.0
2,181,039	+				-0.5
2,181,039	+				+3.3
2,181,039	+				+1.9
2,181,040	-				-0.7
2,181,040	-				-2.8
2,181,072	+				+0.6
2,181,072	+				-2.8
2,181,072	+				-0.3
2,181,072	+				+0.8
2,181,073	-				+5.6
2,181,080	+				-1.6
2,181,085	+				-2.7
2,181,094	+				-1.7
2,181,094	+				+2.7
2,181,095	-				-0.3
2,181,145	+		EFB2_02024	0.19	-0.6
2,181,145	+		EFB2_02024	0.19	-0.2
2,181,145	+		EFB2_02024	0.19	-0.9
2,181,146	-		EFB2_02024	0.19	-0.6
2,181,146	-		EFB2_02024	0.19	+2.4
2,181,146	-		EFB2_02024	0.19	-0.3
2,181,146	-		EFB2_02024	0.19	-1.2
2,181,150	+		EFB2_02024	0.20	-0.9
2,181,150	+		EFB2_02024	0.20	+0.9
2,181,150	+		EFB2_02024	0.20	+0.5
2,181,150	+		EFB2_02024	0.20	-1.6
2,181,150	+		EFB2_02024	0.20	-0.3
2,181,150	+		EFB2_02024	0.20	+1.9
2,181,150	+		EFB2_02024	0.20	+0.1
2,181,150	+		EFB2_02024	0.20	+0.3
2,181,150	+		EFB2_02024	0.20	-0.8
2,181,150	+		EFB2_02024	0.20	+0.6
2,181,151	-		EFB2_02024	0.20	-2.7
2,181,151	-		EFB2_02024	0.20	+2.9
2,181,151	-		EFB2_02024	0.20	-2.0
2,181,151	-		EFB2_02024	0.20	-0.9
2,181,151	-		EFB2_02024	0.20	+0.4
2,181,273	+		EFB2_02024	0.42	+0.6
2,181,273	+		EFB2_02024	0.42	-0.1
2,181,273	+		EFB2_02024	0.42	+0.5
2,181,273	+		EFB2_02024	0.42	-1.1
2,181,273	+		EFB2_02024	0.42	+0.7
2,181,274	-		EFB2_02024	0.42	-0.7
2,181,274	-		EFB2_02024	0.42	-0.6
2,181,274	-		EFB2_02024	0.42	+1.3
2,181,274	-		EFB2_02024	0.42	+0.7
2,181,274	-		EFB2_02024	0.42	-2.1
2,181,304	+		EFB2_02024	0.48	+0.9
2,181,316	+		EFB2_02024	0.50	+0.6
2,181,316	+		EFB2_02024	0.50	+0.5
2,181,355	+		EFB2_02024	0.57	-2.8
2,181,368	+		EFB2_02024	0.59	-1.4
2,181,368	+		EFB2_02024	0.59	-0.7
2,181,368	+		EFB2_02024	0.59	-2.6
2,181,368	+		EFB2_02024	0.59	+1.9
2,181,368	+		EFB2_02024	0.59	+1.9
2,181,368	+		EFB2_02024	0.59	+0.0
2,181,369	-		EFB2_02024	0.59	+1.5
2,181,369	-		EFB2_02024	0.59	-0.3
2,181,369	-		EFB2_02024	0.59	-1.9
2,181,369	-		EFB2_02024	0.59	-1.8
2,181,369	-		EFB2_02024	0.59	+1.4
2,181,369	-		EFB2_02024	0.59	+0.1
2,181,369	-		EFB2_02024	0.59	+0.8
2,181,369	-		EFB2_02024	0.59	+3.6
2,181,369	-		EFB2_02024	0.59	-0.3
2,181,369	-		EFB2_02024	0.59	-0.7
2,181,402	+		EFB2_02024	0.65	-0.9
2,181,402	+		EFB2_02024	0.65	-1.3
2,181,402	+		EFB2_02024	0.65	-1.6
2,181,402	+		EFB2_02024	0.65	+1.3
2,181,402	+		EFB2_02024	0.65	+2.0
2,181,402	+		EFB2_02024	0.65	-1.2
2,181,402	+		EFB2_02024	0.65	+2.3
2,181,402	+		EFB2_02024	0.65	+0.8
2,181,402	+		EFB2_02024	0.65	-2.1
2,181,403	-		EFB2_02024	0.66	+0.0
2,181,403	-		EFB2_02024	0.66	+3.3
2,181,403	-		EFB2_02024	0.66	+0.3
2,181,403	-		EFB2_02024	0.66	-2.1
2,181,403	-		EFB2_02024	0.66	-2.0
2,181,494	+		EFB2_02024	0.82	+3.5
2,181,494	+		EFB2_02024	0.82	+0.6
2,181,495	-		EFB2_02024	0.82	+0.4
2,181,515	+		EFB2_02024	0.86	+0.1
2,181,515	+		EFB2_02024	0.86	+0.4
2,181,515	+		EFB2_02024	0.86	+1.0
2,181,515	+		EFB2_02024	0.86	-0.1
2,181,515	+		EFB2_02024	0.86	-0.6
2,181,516	-		EFB2_02024	0.86	+0.7
2,181,516	-		EFB2_02024	0.86	-0.3
2,181,516	-		EFB2_02024	0.86	+0.1
2,181,516	-		EFB2_02024	0.86	+0.3
2,181,516	-		EFB2_02024	0.86	-1.2
2,181,524	+		EFB2_02024	0.88	+2.3
2,181,524	+		EFB2_02024	0.88	-0.4
2,181,525	-		EFB2_02024	0.88	+0.7
2,181,525	-		EFB2_02024	0.88	-1.1
2,181,525	-		EFB2_02024	0.88	-1.4
2,181,583	+				+0.4
2,181,583	+				-1.9
2,181,583	+				-3.3
2,181,583	+				+1.0
2,181,583	+				-2.5
2,181,583	+				+1.2
2,181,584	-				+1.4
2,181,584	-				-2.0
2,181,584	-				-0.3
2,181,585	+				+1.8
2,181,585	+				-2.3
2,181,585	+				+1.0
2,181,585	+				+1.8
2,181,585	+				+0.4
2,181,585	+				+1.6
2,181,585	+				+1.7
2,181,585	+				+0.7
2,181,585	+				+2.3
2,181,585	+				+1.6
2,181,585	+				+1.6
2,181,585	+				+0.9
2,181,585	+				-1.3
2,181,585	+				-1.6
2,181,585	+				+1.0
2,181,585	+				-2.4
2,181,585	+				-1.3
2,181,586	-				-1.0
2,181,586	-				-0.9
2,181,586	-				+0.4
2,181,586	-				-0.7
2,181,586	-				+1.4
2,181,586	-				-1.1
2,181,586	-				-0.2
2,181,586	-				-0.7
2,181,586	-				+3.3
2,181,586	-				-1.2
2,181,587	+				-0.3
2,181,587	+				-0.3
2,181,587	+				+1.0
2,181,587	+				-1.8
2,181,587	+				-2.5
2,181,587	+				-0.5
2,181,587	+				-1.3
2,181,587	+				-0.3
2,181,587	+				+0.4
2,181,587	+				+1.4
2,181,587	+				-0.5
2,181,587	+				-0.0
2,181,587	+				-2.5
2,181,587	+				+0.9
2,181,587	+				-0.5
2,181,588	-				+0.3
2,181,588	-				+0.1
2,181,588	-				-1.9
2,181,588	-				+0.1
2,181,588	-				+0.1
2,181,588	-				+0.3
2,181,588	-				+0.7
2,181,588	-				-0.3
2,181,588	-				-1.3
2,181,588	-				+1.8
2,181,588	-				+0.3
2,181,588	-				+0.8
2,181,588	-				-0.6
2,181,590	+				+2.1
2,181,590	+				+0.5
2,181,590	+				+0.3
2,181,591	-				+1.3
2,181,591	-				+0.9
2,181,591	-				+2.0
2,181,591	-				+1.8
2,181,591	-				-0.2
2,181,591	-				-1.0
2,181,591	-				-0.7
2,181,591	-				+0.0
2,181,591	-				-1.1
2,181,591	-				+1.3
2,181,594	+				+0.5
2,181,594	+				-1.0
2,181,595	-				-2.4
2,181,600	+				-0.9
2,181,600	+				+0.9
2,181,600	+				+0.4
2,181,600	+				+1.0
2,181,600	+				-2.3
2,181,600	+				-1.4
2,181,601	-				+1.7
2,181,601	-				-0.6
2,181,601	-				-2.3
2,181,607	+				+0.7
2,181,643	+				+0.0
2,181,643	+				+0.9
2,181,643	+				+0.7
2,181,643	+				+0.7
2,181,643	+				-1.6
2,181,644	-				-1.3
2,181,644	-				-1.2
2,181,660	+				-2.2
2,181,660	+				+0.5
2,181,660	+				-0.7
2,181,660	+				-0.2
2,181,660	+				+1.7
2,181,660	+				+2.0
2,181,660	+				-0.1
2,181,660	+				+0.1
2,181,660	+				+1.1
2,181,660	+				+1.3
2,181,660	+				-0.3
2,181,660	+				-0.1
2,181,661	-				+0.8
2,181,661	-				+1.7
2,181,661	-				-0.7
2,181,661	-				+0.0
2,181,661	-				+1.8
2,181,661	-				-0.5
2,181,661	-				-0.7
2,181,661	-				-0.3
2,181,661	-				-0.1
2,181,687	+				-0.0
2,181,687	+				-0.7
2,181,687	+				-0.2
2,181,687	+				+1.0
2,181,688	-				-1.2
2,181,688	-				-2.4
2,181,688	-				-1.6
2,181,688	-				+0.3
2,181,688	-				-0.9
2,181,754	+		EFB2_02025	0.15	+1.7
2,181,754	+		EFB2_02025	0.15	+1.1
2,181,755	-		EFB2_02025	0.15	+0.7
2,181,784	+		EFB2_02025	0.19	-1.5
2,181,784	+		EFB2_02025	0.19	-1.9
2,181,784	+		EFB2_02025	0.19	-1.2
2,181,785	-		EFB2_02025	0.19	-1.2
2,181,813	+		EFB2_02025	0.22	-0.7
2,181,830	+		EFB2_02025	0.24	-0.9
2,181,931	-		EFB2_02025	0.36	+2.3
2,181,941	-		EFB2_02025	0.37	-2.1
2,181,952	+		EFB2_02025	0.38	+0.8
2,181,952	+		EFB2_02025	0.38	+1.3
2,181,952	+		EFB2_02025	0.38	-1.6
2,181,952	+		EFB2_02025	0.38	+1.2
2,181,952	+		EFB2_02025	0.38	+1.4
2,181,952	+		EFB2_02025	0.38	+5.3
2,181,952	+		EFB2_02025	0.38	-0.4
2,181,952	+		EFB2_02025	0.38	+5.6
2,181,953	-		EFB2_02025	0.38	-2.4
2,181,953	-		EFB2_02025	0.38	+0.9
2,181,953	-		EFB2_02025	0.38	+0.8
2,181,953	-		EFB2_02025	0.38	+1.1
2,181,973	+		EFB2_02025	0.41	-0.1
2,181,973	+		EFB2_02025	0.41	-0.7
2,181,973	+		EFB2_02025	0.41	-0.9
2,181,974	-		EFB2_02025	0.41	-0.1
2,181,974	-		EFB2_02025	0.41	-0.7
2,181,994	+		EFB2_02025	0.43	+0.2
2,181,994	+		EFB2_02025	0.43	+2.4
2,182,049	+		EFB2_02025	0.50	+0.5
2,182,049	+		EFB2_02025	0.50	-0.6
2,182,049	+		EFB2_02025	0.50	-2.5
2,182,050	-		EFB2_02025	0.50	+0.0
2,182,102	+		EFB2_02025	0.56	-0.8
2,182,102	+		EFB2_02025	0.56	-2.8
2,182,102	+		EFB2_02025	0.56	+0.7
2,182,102	+		EFB2_02025	0.56	+0.3
2,182,103	-		EFB2_02025	0.56	-1.7
2,182,157	+		EFB2_02025	0.62	+1.4
2,182,157	+		EFB2_02025	0.62	+1.7
2,182,157	+		EFB2_02025	0.62	+0.9
2,182,157	+		EFB2_02025	0.62	-0.1
2,182,157	+		EFB2_02025	0.62	-2.6
2,182,157	+		EFB2_02025	0.62	+1.1
2,182,157	+		EFB2_02025	0.62	+1.1
2,182,158	-		EFB2_02025	0.62	+3.1
2,182,158	-		EFB2_02025	0.62	+2.3
2,182,158	-		EFB2_02025	0.62	+0.8
2,182,158	-		EFB2_02025	0.62	+1.6
2,182,158	-		EFB2_02025	0.62	+0.5
2,182,158	-		EFB2_02025	0.62	+0.0
2,182,158	-		EFB2_02025	0.62	-1.9
2,182,158	-		EFB2_02025	0.62	+0.4
2,182,158	-		EFB2_02025	0.62	-0.1
2,182,201	+		EFB2_02025	0.67	+0.5
2,182,201	+		EFB2_02025	0.67	+0.0
2,182,201	+		EFB2_02025	0.67	-0.4
2,182,201	+		EFB2_02025	0.67	+1.3
2,182,201	+		EFB2_02025	0.67	+0.3
2,182,201	+		EFB2_02025	0.67	-0.9
2,182,202	-		EFB2_02025	0.67	-0.4
2,182,205	+		EFB2_02025	0.68	-3.1
2,182,205	+		EFB2_02025	0.68	-1.1
2,182,205	+		EFB2_02025	0.68	+0.0
2,182,205	+		EFB2_02025	0.68	-0.1
2,182,205	+		EFB2_02025	0.68	+0.4
2,182,205	+		EFB2_02025	0.68	-0.5
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