Strain Fitness in Escherichia fergusonii Becca around EFB2_01950

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,114,014	+		EFB2_01948	0.88	+0.7
2,114,042	+				-2.4
2,114,045	+				-0.6
2,114,045	+				-0.1
2,114,045	+				+1.3
2,114,045	+				-3.1
2,114,045	+				-1.1
2,114,045	+				+0.2
2,114,045	+				-0.1
2,114,045	+				-2.5
2,114,045	+				+0.2
2,114,046	-				-1.1
2,114,046	-				-2.4
2,114,046	-				+0.9
2,114,046	-				+0.5
2,114,046	-				+2.0
2,114,046	-				+0.2
2,114,046	-				+3.2
2,114,046	-				-0.1
2,114,046	-				+1.7
2,114,046	-				-0.4
2,114,046	-				-3.1
2,114,046	-				+0.4
2,114,046	-				+2.1
2,114,055	+				-0.4
2,114,120	+				+1.0
2,114,121	-				+0.2
2,114,121	-				-2.9
2,114,124	+				+0.8
2,114,124	+				+1.6
2,114,155	+				+1.7
2,114,155	+				+0.4
2,114,156	-				+1.3
2,114,162	-				-3.0
2,114,277	-		EFB2_01949	0.19	+0.2
2,114,277	-		EFB2_01949	0.19	+1.2
2,114,310	+		EFB2_01949	0.23	+1.2
2,114,310	+		EFB2_01949	0.23	+0.2
2,114,310	+		EFB2_01949	0.23	-1.5
2,114,310	+		EFB2_01949	0.23	+2.0
2,114,310	+		EFB2_01949	0.23	-1.3
2,114,310	+		EFB2_01949	0.23	+1.2
2,114,310	+		EFB2_01949	0.23	+1.0
2,114,311	-		EFB2_01949	0.24	-1.4
2,114,311	-		EFB2_01949	0.24	+3.4
2,114,311	-		EFB2_01949	0.24	-0.0
2,114,311	-		EFB2_01949	0.24	+0.4
2,114,342	+		EFB2_01949	0.27	+0.9
2,114,342	+		EFB2_01949	0.27	+1.8
2,114,342	+		EFB2_01949	0.27	-0.6
2,114,342	+		EFB2_01949	0.27	+1.1
2,114,342	+		EFB2_01949	0.27	+0.7
2,114,343	-		EFB2_01949	0.28	+0.2
2,114,343	-		EFB2_01949	0.28	+0.6
2,114,343	-		EFB2_01949	0.28	+1.0
2,114,343	-		EFB2_01949	0.28	-0.6
2,114,343	-		EFB2_01949	0.28	-2.2
2,114,419	+		EFB2_01949	0.37	-1.6
2,114,420	-		EFB2_01949	0.37	-1.9
2,114,464	+		EFB2_01949	0.43	-2.3
2,114,464	+		EFB2_01949	0.43	-2.4
2,114,464	+		EFB2_01949	0.43	-2.1
2,114,465	-		EFB2_01949	0.43	-2.0
2,114,465	-		EFB2_01949	0.43	+1.1
2,114,482	+		EFB2_01949	0.45	-1.2
2,114,519	+		EFB2_01949	0.50	-0.8
2,114,519	+		EFB2_01949	0.50	-1.1
2,114,519	+		EFB2_01949	0.50	-0.6
2,114,519	+		EFB2_01949	0.50	+2.2
2,114,519	+		EFB2_01949	0.50	-0.1
2,114,519	+		EFB2_01949	0.50	+0.2
2,114,520	-		EFB2_01949	0.50	-3.4
2,114,520	-		EFB2_01949	0.50	-3.7
2,114,520	-		EFB2_01949	0.50	+1.2
2,114,520	-		EFB2_01949	0.50	+0.4
2,114,520	-		EFB2_01949	0.50	+2.2
2,114,520	-		EFB2_01949	0.50	-2.5
2,114,521	+		EFB2_01949	0.50	-1.1
2,114,521	+		EFB2_01949	0.50	-0.1
2,114,542	+		EFB2_01949	0.53	+1.0
2,114,542	+		EFB2_01949	0.53	+1.3
2,114,578	+		EFB2_01949	0.57	-2.6
2,114,578	+		EFB2_01949	0.57	+0.4
2,114,578	+		EFB2_01949	0.57	-1.6
2,114,578	+		EFB2_01949	0.57	-0.9
2,114,578	+		EFB2_01949	0.57	-0.2
2,114,578	+		EFB2_01949	0.57	+0.8
2,114,578	+		EFB2_01949	0.57	-2.2
2,114,578	+		EFB2_01949	0.57	+1.3
2,114,578	+		EFB2_01949	0.57	+0.5
2,114,578	+		EFB2_01949	0.57	+2.2
2,114,578	+		EFB2_01949	0.57	+0.6
2,114,578	+		EFB2_01949	0.57	-2.1
2,114,578	+		EFB2_01949	0.57	+1.2
2,114,578	+		EFB2_01949	0.57	+1.1
2,114,579	-		EFB2_01949	0.57	+1.4
2,114,579	-		EFB2_01949	0.57	-2.4
2,114,579	-		EFB2_01949	0.57	-1.0
2,114,579	-		EFB2_01949	0.57	+1.4
2,114,579	-		EFB2_01949	0.57	-0.8
2,114,579	-		EFB2_01949	0.57	-1.0
2,114,579	-		EFB2_01949	0.57	-2.1
2,114,579	-		EFB2_01949	0.57	+2.8
2,114,579	-		EFB2_01949	0.57	-1.4
2,114,579	-		EFB2_01949	0.57	+0.5
2,114,644	-		EFB2_01949	0.65	+0.8
2,114,649	-		EFB2_01949	0.66	-1.6
2,114,649	-		EFB2_01949	0.66	-2.0
2,114,684	+		EFB2_01949	0.70	-0.6
2,114,684	+		EFB2_01949	0.70	+2.4
2,114,685	-		EFB2_01949	0.70	+1.9
2,114,685	-		EFB2_01949	0.70	+1.1
2,114,685	-		EFB2_01949	0.70	-1.9
2,114,685	-		EFB2_01949	0.70	-0.8
2,114,685	-		EFB2_01949	0.70	+0.3
2,114,708	+		EFB2_01949	0.73	+0.6
2,114,708	+		EFB2_01949	0.73	-1.5
2,114,708	+		EFB2_01949	0.73	-0.1
2,114,708	+		EFB2_01949	0.73	+0.0
2,114,709	-		EFB2_01949	0.73	+1.4
2,114,709	-		EFB2_01949	0.73	-2.0
2,114,709	-		EFB2_01949	0.73	-1.6
2,114,709	-		EFB2_01949	0.73	+2.2
2,114,709	-		EFB2_01949	0.73	-1.5
2,114,709	-		EFB2_01949	0.73	+1.7
2,114,709	-		EFB2_01949	0.73	+1.5
2,114,709	-		EFB2_01949	0.73	-0.1
2,114,717	+		EFB2_01949	0.74	-2.8
2,114,756	+		EFB2_01949	0.79	+0.6
2,114,837	+		EFB2_01949	0.89	-0.4
2,114,837	+		EFB2_01949	0.89	-0.8
2,114,837	+		EFB2_01949	0.89	-0.1
2,114,837	+		EFB2_01949	0.89	-0.8
2,114,837	+		EFB2_01949	0.89	-1.1
2,114,838	-		EFB2_01949	0.90	-2.0
2,114,838	-		EFB2_01949	0.90	+0.8
2,114,838	-		EFB2_01949	0.90	+0.9
2,114,838	-		EFB2_01949	0.90	-0.9
2,114,852	+				+0.1
2,114,853	-				-0.8
2,114,897	+				-0.3
2,114,898	-				-2.1
2,114,914	+				-0.1
2,114,914	+				+0.4
2,114,914	+				+1.4
2,114,914	+				-0.8
2,114,914	+				-1.4
2,114,914	+				-0.1
2,114,914	+				+0.6
2,114,914	+				+0.9
2,114,914	+				+0.4
2,114,914	+				+2.3
2,114,914	+				-2.0
2,114,914	+				-1.3
2,114,914	+				+0.2
2,114,914	+				+0.8
2,114,915	-				-0.8
2,114,915	-				-0.5
2,114,915	-				+0.7
2,114,915	-				+0.7
2,114,915	-				-1.0
2,114,973	+				+0.5
2,114,974	-				-0.2
2,114,974	-				+1.8
2,114,974	-				-2.1
2,115,156	-				+2.5
2,115,169	-				+1.1
2,115,201	+				-1.5
2,115,201	+				-1.0
2,115,202	-				+0.2
2,115,202	-				+0.7
2,115,202	-				-2.5
2,115,202	-				+1.0
2,115,202	-				+0.6
2,115,249	+				+0.2
2,115,249	+				+0.0
2,115,249	+				-0.4
2,115,250	-				-2.1
2,115,271	+				-1.4
2,115,271	+				-0.4
2,115,282	+				+2.0
2,115,283	-				-0.1
2,115,283	-				-1.0
2,115,350	+				-0.3
2,115,350	+				-0.1
2,115,350	+				+2.6
2,115,350	+				-0.8
2,115,350	+				-0.9
2,115,350	+				-3.0
2,115,350	+				-0.5
2,115,350	+				-0.5
2,115,350	+				-2.8
2,115,350	+				-2.4
2,115,350	+				+1.3
2,115,350	+				+1.4
2,115,350	+				-2.1
2,115,350	+				+1.6
2,115,351	-				+1.0
2,115,351	-				+1.4
2,115,351	-				-1.3
2,115,351	-				-0.7
2,115,351	-				+0.5
2,115,351	-				-0.7
2,115,351	-				+1.6
2,115,351	-				+1.4
2,115,351	-				+0.8
2,115,351	-				+0.3
2,115,351	-				-2.4
2,115,351	-				-0.7
2,115,351	-				+0.6
2,115,352	+				-1.6
2,115,352	+				+1.0
2,115,352	+				-1.5
2,115,352	+				-0.2
2,115,352	+				-0.3
2,115,352	+				-3.2
2,115,352	+				+0.6
2,115,352	+				+0.5
2,115,352	+				+0.2
2,115,352	+				+0.6
2,115,352	+				+0.4
2,115,352	+				+0.6
2,115,352	+				+1.2
2,115,353	-				+1.4
2,115,353	-				+2.5
2,115,353	-				+0.0
2,115,353	-				-2.4
2,115,353	-				-0.8
2,115,353	-				-0.4
2,115,353	-				+0.7
2,115,353	-				-3.1
2,115,437	-				-0.4
2,115,447	-				-0.6
2,115,461	+				+1.2
2,115,461	+				-1.5
2,115,461	+				+3.7
2,115,462	-				-0.4
2,115,462	-				+1.0
2,115,462	-				-1.0
2,115,462	-				-0.1
2,115,462	-				-1.0
2,115,462	-				-0.8
2,115,462	-				+2.2
2,115,462	-				+0.5
2,115,472	+		EFB2_01951	0.11	-0.2
2,115,472	+		EFB2_01951	0.11	-1.9
2,115,502	+		EFB2_01951	0.14	-0.8
2,115,530	+		EFB2_01951	0.18	-0.4
2,115,530	+		EFB2_01951	0.18	-1.6
2,115,530	+		EFB2_01951	0.18	+0.0
2,115,530	+		EFB2_01951	0.18	+1.3
2,115,530	+		EFB2_01951	0.18	+0.6
2,115,531	-		EFB2_01951	0.18	+0.1
2,115,531	-		EFB2_01951	0.18	-1.5
2,115,531	-		EFB2_01951	0.18	+1.2
2,115,531	-		EFB2_01951	0.18	-1.5
2,115,531	-		EFB2_01951	0.18	+0.8
2,115,531	-		EFB2_01951	0.18	-1.8
2,115,531	-		EFB2_01951	0.18	-0.2
2,115,531	-		EFB2_01951	0.18	-0.3
2,115,531	-		EFB2_01951	0.18	+0.2
2,115,531	-		EFB2_01951	0.18	+0.2
2,115,531	-		EFB2_01951	0.18	-2.1
2,115,531	-		EFB2_01951	0.18	+0.6
2,115,531	-		EFB2_01951	0.18	+1.1
2,115,534	+		EFB2_01951	0.18	+0.7
2,115,534	+		EFB2_01951	0.18	+2.5
2,115,534	+		EFB2_01951	0.18	-0.0
2,115,534	+		EFB2_01951	0.18	+0.2
2,115,534	+		EFB2_01951	0.18	-1.7
2,115,534	+		EFB2_01951	0.18	+0.2
2,115,534	+		EFB2_01951	0.18	+0.5
2,115,534	+		EFB2_01951	0.18	+0.1
2,115,535	-		EFB2_01951	0.18	+0.4
2,115,535	-		EFB2_01951	0.18	-0.8
2,115,535	-		EFB2_01951	0.18	+0.2
2,115,535	-		EFB2_01951	0.18	-1.3
2,115,535	-		EFB2_01951	0.18	+1.4
2,115,535	-		EFB2_01951	0.18	+1.7
2,115,540	+		EFB2_01951	0.19	+0.1
2,115,549	-		EFB2_01951	0.20	+0.2
2,115,562	+		EFB2_01951	0.22	+0.9
2,115,606	+		EFB2_01951	0.27	-0.6
2,115,612	+		EFB2_01951	0.27	+2.2
2,115,640	+		EFB2_01951	0.31	-0.1
2,115,640	+		EFB2_01951	0.31	-1.6
2,115,640	+		EFB2_01951	0.31	+1.5
2,115,641	-		EFB2_01951	0.31	-0.8
2,115,641	-		EFB2_01951	0.31	+0.7
2,115,641	-		EFB2_01951	0.31	-0.0
2,115,641	-		EFB2_01951	0.31	+1.3
2,115,641	-		EFB2_01951	0.31	+2.8
2,115,641	-		EFB2_01951	0.31	-3.1
2,115,641	-		EFB2_01951	0.31	+0.9
2,115,641	-		EFB2_01951	0.31	+1.2
2,115,641	-		EFB2_01951	0.31	+2.6
2,115,641	-		EFB2_01951	0.31	+0.9
2,115,641	-		EFB2_01951	0.31	-1.1
2,115,648	-		EFB2_01951	0.32	-2.7
2,115,654	+		EFB2_01951	0.32	+2.0
2,115,655	-		EFB2_01951	0.33	+1.6
2,115,754	+		EFB2_01951	0.44	-2.6
2,115,775	-		EFB2_01951	0.47	+0.6
2,115,777	+		EFB2_01951	0.47	+2.5
2,115,789	+		EFB2_01951	0.49	+1.2
2,115,789	+		EFB2_01951	0.49	+0.3
2,115,789	+		EFB2_01951	0.49	+1.9
2,115,789	+		EFB2_01951	0.49	-1.0
2,115,789	+		EFB2_01951	0.49	-1.1
2,115,789	+		EFB2_01951	0.49	-1.3
2,115,789	+		EFB2_01951	0.49	+1.2
2,115,789	+		EFB2_01951	0.49	+1.6
2,115,789	+		EFB2_01951	0.49	+0.1
2,115,789	+		EFB2_01951	0.49	-0.9
2,115,789	+		EFB2_01951	0.49	-1.3
2,115,789	+		EFB2_01951	0.49	-2.2
2,115,789	+		EFB2_01951	0.49	+1.4
2,115,789	+		EFB2_01951	0.49	+1.6
2,115,789	+		EFB2_01951	0.49	+0.5
2,115,790	-		EFB2_01951	0.49	-0.3
2,115,790	-		EFB2_01951	0.49	-1.9
2,115,790	-		EFB2_01951	0.49	+4.2
2,115,790	-		EFB2_01951	0.49	+2.3
2,115,790	-		EFB2_01951	0.49	+0.9
2,115,790	-		EFB2_01951	0.49	+0.5
2,115,790	-		EFB2_01951	0.49	+2.1
2,115,790	-		EFB2_01951	0.49	+1.7
2,115,790	-		EFB2_01951	0.49	+0.5
2,115,790	-		EFB2_01951	0.49	+0.8
2,115,790	-		EFB2_01951	0.49	-0.4
2,115,790	-		EFB2_01951	0.49	-0.0
2,115,790	-		EFB2_01951	0.49	-1.3
2,115,790	-		EFB2_01951	0.49	-0.6
2,115,790	-		EFB2_01951	0.49	+1.1
2,115,792	+		EFB2_01951	0.49	-0.8
2,115,792	+		EFB2_01951	0.49	-2.2
2,115,792	+		EFB2_01951	0.49	+0.2
2,115,793	-		EFB2_01951	0.49	+0.8
2,115,793	-		EFB2_01951	0.49	-0.8
2,115,793	-		EFB2_01951	0.49	-0.2
2,115,793	-		EFB2_01951	0.49	+0.1
2,115,793	-		EFB2_01951	0.49	-3.3
2,115,793	-		EFB2_01951	0.49	-2.9
2,115,793	-		EFB2_01951	0.49	-1.5
2,115,802	-		EFB2_01951	0.50	-0.7
2,115,879	+		EFB2_01951	0.59	-1.4
2,115,879	+		EFB2_01951	0.59	+1.3
2,115,879	+		EFB2_01951	0.59	+1.6
2,115,879	+		EFB2_01951	0.59	-0.9
2,115,879	+		EFB2_01951	0.59	-1.0
2,115,879	+		EFB2_01951	0.59	-2.5
2,115,879	+		EFB2_01951	0.59	-1.6
2,115,879	+		EFB2_01951	0.59	-0.6
2,115,879	+		EFB2_01951	0.59	-1.0
2,115,879	+		EFB2_01951	0.59	+0.2
2,115,880	-		EFB2_01951	0.59	-2.1
2,115,880	-		EFB2_01951	0.59	+1.3
2,115,880	-		EFB2_01951	0.59	-2.2
2,115,880	-		EFB2_01951	0.59	-1.7
2,115,880	-		EFB2_01951	0.59	-0.3
2,115,880	-		EFB2_01951	0.59	+0.0
2,115,880	-		EFB2_01951	0.59	+0.4
2,115,880	-		EFB2_01951	0.59	+0.3
2,115,880	-		EFB2_01951	0.59	-1.3
2,115,908	-		EFB2_01951	0.63	-0.6
2,115,908	-		EFB2_01951	0.63	-2.5
2,115,954	+		EFB2_01951	0.68	+0.2
2,115,990	+		EFB2_01951	0.73	-0.5
2,115,999	+		EFB2_01951	0.74	+1.2
2,116,071	-		EFB2_01951	0.82	+0.8
2,116,071	-		EFB2_01951	0.82	-2.6
2,116,071	-		EFB2_01951	0.82	+0.7
2,116,091	+		EFB2_01951	0.85	+1.4