Strain Fitness in Escherichia fergusonii Becca around EFB2_01591

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,665,223	-		EFB2_01590	0.33	+1.7
1,665,240	+		EFB2_01590	0.34	+0.8
1,665,240	+		EFB2_01590	0.34	+2.2
1,665,240	+		EFB2_01590	0.34	-1.8
1,665,241	-		EFB2_01590	0.34	+2.1
1,665,260	+		EFB2_01590	0.36	+0.2
1,665,260	+		EFB2_01590	0.36	+0.2
1,665,261	-		EFB2_01590	0.36	-0.2
1,665,261	-		EFB2_01590	0.36	-0.8
1,665,261	-		EFB2_01590	0.36	-1.1
1,665,266	+		EFB2_01590	0.36	+1.6
1,665,266	+		EFB2_01590	0.36	-1.6
1,665,266	+		EFB2_01590	0.36	-1.7
1,665,266	+		EFB2_01590	0.36	-2.0
1,665,266	+		EFB2_01590	0.36	-0.8
1,665,317	+		EFB2_01590	0.40	-2.4
1,665,318	-		EFB2_01590	0.40	-0.2
1,665,466	+		EFB2_01590	0.52	+0.4
1,665,466	+		EFB2_01590	0.52	+1.2
1,665,466	+		EFB2_01590	0.52	-3.1
1,665,466	+		EFB2_01590	0.52	+1.1
1,665,467	-		EFB2_01590	0.52	+2.5
1,665,467	-		EFB2_01590	0.52	-3.1
1,665,467	-		EFB2_01590	0.52	+1.3
1,665,467	-		EFB2_01590	0.52	-1.1
1,665,467	-		EFB2_01590	0.52	+0.1
1,665,467	-		EFB2_01590	0.52	-1.0
1,665,570	-		EFB2_01590	0.60	+0.5
1,665,588	+		EFB2_01590	0.61	-3.8
1,665,588	+		EFB2_01590	0.61	+0.8
1,665,605	+		EFB2_01590	0.63	-1.0
1,665,605	+		EFB2_01590	0.63	-1.5
1,665,606	-		EFB2_01590	0.63	-1.7
1,665,606	-		EFB2_01590	0.63	-2.0
1,665,606	-		EFB2_01590	0.63	-0.2
1,665,606	-		EFB2_01590	0.63	+0.7
1,665,630	+		EFB2_01590	0.65	-1.0
1,665,631	-		EFB2_01590	0.65	+1.1
1,665,666	+		EFB2_01590	0.67	-0.8
1,665,666	+		EFB2_01590	0.67	+0.8
1,665,666	+		EFB2_01590	0.67	-0.2
1,665,666	+		EFB2_01590	0.67	-1.6
1,665,666	+		EFB2_01590	0.67	-0.3
1,665,666	+		EFB2_01590	0.67	+1.1
1,665,666	+		EFB2_01590	0.67	-1.0
1,665,666	+		EFB2_01590	0.67	+0.9
1,665,666	+		EFB2_01590	0.67	-0.7
1,665,666	+		EFB2_01590	0.67	+0.8
1,665,667	-		EFB2_01590	0.67	-2.4
1,665,667	-		EFB2_01590	0.67	-2.6
1,665,667	-		EFB2_01590	0.67	-0.6
1,665,667	-		EFB2_01590	0.67	+0.2
1,665,667	-		EFB2_01590	0.67	+0.3
1,665,667	-		EFB2_01590	0.67	-0.6
1,665,710	+		EFB2_01590	0.71	+0.1
1,665,710	+		EFB2_01590	0.71	-3.0
1,665,722	+		EFB2_01590	0.72	-3.1
1,665,722	+		EFB2_01590	0.72	-1.1
1,665,723	-		EFB2_01590	0.72	-3.2
1,665,723	-		EFB2_01590	0.72	-1.8
1,665,723	-		EFB2_01590	0.72	+0.9
1,665,723	-		EFB2_01590	0.72	+1.9
1,665,732	-		EFB2_01590	0.72	-1.8
1,665,735	+		EFB2_01590	0.73	-0.2
1,665,735	+		EFB2_01590	0.73	+1.1
1,665,735	+		EFB2_01590	0.73	+1.5
1,665,736	-		EFB2_01590	0.73	+1.3
1,665,736	-		EFB2_01590	0.73	+0.7
1,665,736	-		EFB2_01590	0.73	+3.7
1,665,736	-		EFB2_01590	0.73	+2.1
1,665,736	-		EFB2_01590	0.73	-0.8
1,665,740	+		EFB2_01590	0.73	-1.7
1,665,740	+		EFB2_01590	0.73	+0.1
1,665,740	+		EFB2_01590	0.73	-0.7
1,665,740	+		EFB2_01590	0.73	-0.9
1,665,740	+		EFB2_01590	0.73	-0.6
1,665,740	+		EFB2_01590	0.73	-0.4
1,665,740	+		EFB2_01590	0.73	-2.7
1,665,741	-		EFB2_01590	0.73	-1.8
1,665,741	-		EFB2_01590	0.73	+0.5
1,665,741	-		EFB2_01590	0.73	+1.7
1,665,741	-		EFB2_01590	0.73	-0.2
1,665,741	-		EFB2_01590	0.73	-2.4
1,665,741	-		EFB2_01590	0.73	+0.0
1,665,741	-		EFB2_01590	0.73	+2.0
1,665,741	-		EFB2_01590	0.73	-2.0
1,665,800	+		EFB2_01590	0.78	+1.2
1,665,800	+		EFB2_01590	0.78	+1.1
1,665,800	+		EFB2_01590	0.78	+1.0
1,665,800	+		EFB2_01590	0.78	-0.5
1,665,801	-		EFB2_01590	0.78	-0.6
1,665,801	-		EFB2_01590	0.78	+0.5
1,665,836	+		EFB2_01590	0.80	-0.6
1,665,837	-		EFB2_01590	0.80	+2.8
1,665,837	-		EFB2_01590	0.80	-0.3
1,665,861	+		EFB2_01590	0.82	+2.9
1,665,895	+		EFB2_01590	0.85	-2.9
1,665,895	+		EFB2_01590	0.85	-3.0
1,665,913	+		EFB2_01590	0.86	-1.2
1,665,913	+		EFB2_01590	0.86	+0.3
1,665,914	-		EFB2_01590	0.86	+1.1
1,665,914	-		EFB2_01590	0.86	-0.0
1,665,914	-		EFB2_01590	0.86	-1.8
1,665,923	+		EFB2_01590	0.87	-0.4
1,665,924	-		EFB2_01590	0.87	-0.5
1,665,924	-		EFB2_01590	0.87	+0.2
1,665,986	+				-1.8
1,665,986	+				-0.2
1,665,986	+				+1.8
1,665,986	+				-1.9
1,665,986	+				+0.2
1,665,986	+				+0.1
1,665,986	+				-0.1
1,665,986	+				-2.9
1,665,986	+				+1.5
1,665,986	+				+0.1
1,665,987	-				-1.3
1,665,987	-				-2.1
1,665,987	-				+0.7
1,665,987	-				+0.6
1,665,987	-				-0.7
1,665,987	-				+0.9
1,665,987	-				-1.1
1,665,987	-				-0.2
1,665,987	-				+2.2
1,665,987	-				-1.7
1,665,987	-				-0.7
1,665,987	-				+1.1
1,665,988	+				+1.5
1,665,988	+				-2.6
1,665,988	+				-2.2
1,665,988	+				+1.0
1,665,988	+				-0.1
1,665,988	+				-1.3
1,665,988	+				-1.5
1,665,988	+				-0.1
1,665,989	-				+4.0
1,665,989	-				-1.7
1,665,989	-				-3.0
1,665,989	-				-3.7
1,666,068	+				+1.1
1,666,068	+				+2.1
1,666,068	+				-0.6
1,666,068	+				+1.5
1,666,069	-				-2.3
1,666,073	+				+0.6
1,666,073	+				-0.5
1,666,073	+				+1.5
1,666,073	+				+1.5
1,666,074	-				-1.5
1,666,074	-				+0.7
1,666,074	-				+0.9
1,666,076	+				-2.4
1,666,077	-				-0.4
1,666,077	-				-0.6
1,666,077	-				+0.9
1,666,087	+				-0.3
1,666,087	+				-0.1
1,666,087	+				-0.0
1,666,088	-				-0.1
1,666,090	+				-0.2
1,666,090	+				+1.5
1,666,090	+				+2.6
1,666,091	-				+2.1
1,666,091	-				+1.0
1,666,091	-				-1.1
1,666,091	-				+1.3
1,666,091	-				+0.2
1,666,091	-				-0.5
1,666,116	+				+1.1
1,666,117	-				-2.5
1,666,117	-				-1.2
1,666,117	-				-0.1
1,666,122	+				-0.2
1,666,122	+				-0.5
1,666,122	+				+1.1
1,666,122	+				+1.8
1,666,123	-				-1.1
1,666,128	-				-1.7
1,666,128	-				+0.3
1,666,135	+				-1.2
1,666,136	-				-0.2
1,666,143	+				-0.1
1,666,143	+				-1.2
1,666,143	+				+0.5
1,666,143	+				+0.5
1,666,143	+				-0.2
1,666,143	+				+0.1
1,666,143	+				-1.0
1,666,143	+				+0.6
1,666,143	+				+0.3
1,666,144	-				-1.9
1,666,144	-				-1.9
1,666,144	-				-0.8
1,666,144	-				-1.1
1,666,144	-				-1.3
1,666,144	-				+1.5
1,666,144	-				-1.8
1,666,145	+				+0.9
1,666,145	+				-2.0
1,666,145	+				-0.6
1,666,145	+				-1.3
1,666,145	+				-1.5
1,666,145	+				+0.8
1,666,145	+				-0.5
1,666,145	+				-3.9
1,666,145	+				-1.8
1,666,145	+				+1.6
1,666,145	+				-3.7
1,666,145	+				-0.8
1,666,145	+				+1.5
1,666,145	+				+0.5
1,666,145	+				-0.1
1,666,146	-				-1.4
1,666,146	-				+1.6
1,666,146	-				-0.2
1,666,146	-				-3.3
1,666,146	-				+0.7
1,666,146	-				+2.2
1,666,146	-				-1.0
1,666,146	-				+0.3
1,666,146	-				+0.9
1,666,146	-				+1.0
1,666,146	-				-0.7
1,666,146	-				-0.3
1,666,146	-				-0.9
1,666,146	-				+1.4
1,666,146	-				-2.5
1,666,146	-				+0.2
1,666,146	-				+1.1
1,666,146	-				+0.1
1,666,149	+				+0.4
1,666,149	+				-1.7
1,666,150	-				-0.2
1,666,159	-				+0.4
1,666,159	-				+2.9
1,666,159	-				+0.3
1,666,165	-				-2.6
1,666,185	+				-2.6
1,666,185	+				-0.1
1,666,186	-				-0.4
1,666,196	-				-0.6
1,666,279	+				-2.9
1,666,279	+				-2.1
1,666,279	+				+1.7
1,666,279	+				+1.6
1,666,280	-				+1.2
1,666,280	-				-1.4
1,666,576	+		EFB2_01591	0.24	+0.8
1,666,576	+		EFB2_01591	0.24	-1.3
1,666,576	+		EFB2_01591	0.24	-0.3
1,666,576	+		EFB2_01591	0.24	-0.1
1,666,576	+		EFB2_01591	0.24	-1.5
1,666,576	+		EFB2_01591	0.24	-2.6
1,666,577	-		EFB2_01591	0.24	-0.2
1,666,577	-		EFB2_01591	0.24	-1.1
1,666,577	-		EFB2_01591	0.24	+0.1
1,666,577	-		EFB2_01591	0.24	-1.3
1,666,577	-		EFB2_01591	0.24	-1.5
1,666,628	-		EFB2_01591	0.27	-0.9
1,666,628	-		EFB2_01591	0.27	-1.7
1,666,628	-		EFB2_01591	0.27	+0.9
1,666,673	-		EFB2_01591	0.30	+0.3
1,666,673	-		EFB2_01591	0.30	-1.3
1,666,673	-		EFB2_01591	0.30	-2.3
1,666,700	+		EFB2_01591	0.31	+0.4
1,666,700	+		EFB2_01591	0.31	-0.9
1,666,701	-		EFB2_01591	0.31	-1.1
1,666,701	-		EFB2_01591	0.31	+0.4
1,666,701	-		EFB2_01591	0.31	+0.7
1,666,726	+		EFB2_01591	0.33	-0.6
1,666,726	+		EFB2_01591	0.33	-1.8
1,666,726	+		EFB2_01591	0.33	-2.3
1,666,727	-		EFB2_01591	0.33	-1.3
1,667,019	+		EFB2_01591	0.50	+0.5
1,667,019	+		EFB2_01591	0.50	-3.2
1,667,019	+		EFB2_01591	0.50	+0.8
1,667,019	+		EFB2_01591	0.50	+1.9
1,667,019	+		EFB2_01591	0.50	-0.3
1,667,019	+		EFB2_01591	0.50	-2.3
1,667,020	-		EFB2_01591	0.50	-0.0
1,667,020	-		EFB2_01591	0.50	+0.3
1,667,020	-		EFB2_01591	0.50	-0.9
1,667,093	+		EFB2_01591	0.55	-0.9
1,667,093	+		EFB2_01591	0.55	+2.3
1,667,093	+		EFB2_01591	0.55	+2.3
1,667,094	-		EFB2_01591	0.55	+1.2
1,667,154	+		EFB2_01591	0.58	+1.6
1,667,154	+		EFB2_01591	0.58	-1.1
1,667,154	+		EFB2_01591	0.58	-1.4
1,667,154	+		EFB2_01591	0.58	+0.0
1,667,154	+		EFB2_01591	0.58	+0.6
1,667,154	+		EFB2_01591	0.58	-0.6
1,667,154	+		EFB2_01591	0.58	-3.0
1,667,155	-		EFB2_01591	0.58	-1.9
1,667,155	-		EFB2_01591	0.58	+0.7
1,667,155	-		EFB2_01591	0.58	-1.1
1,667,312	+		EFB2_01591	0.68	-0.2
1,667,312	+		EFB2_01591	0.68	-0.5
1,667,312	+		EFB2_01591	0.68	-1.3
1,667,313	-		EFB2_01591	0.68	-2.3
1,667,313	-		EFB2_01591	0.68	-0.7
1,667,313	-		EFB2_01591	0.68	-0.4
1,667,313	-		EFB2_01591	0.68	-1.9
1,667,313	-		EFB2_01591	0.68	-0.2
1,667,344	+		EFB2_01591	0.70	+1.1
1,667,344	+		EFB2_01591	0.70	-0.2
1,667,345	-		EFB2_01591	0.70	-1.7
1,667,406	-		EFB2_01591	0.73	+1.0
1,667,516	+		EFB2_01591	0.80	-0.8
1,667,517	-		EFB2_01591	0.80	-0.0
1,667,517	-		EFB2_01591	0.80	+0.1
1,667,568	+		EFB2_01591	0.83	+3.0
1,667,568	+		EFB2_01591	0.83	+0.4
1,667,568	+		EFB2_01591	0.83	+0.5
1,667,568	+		EFB2_01591	0.83	+0.1
1,667,568	+		EFB2_01591	0.83	-0.9
1,667,568	+		EFB2_01591	0.83	-0.5
1,667,568	+		EFB2_01591	0.83	-3.2
1,667,568	+		EFB2_01591	0.83	-1.2
1,667,568	+		EFB2_01591	0.83	-2.7
1,667,569	-		EFB2_01591	0.83	-1.8
1,667,569	-		EFB2_01591	0.83	+1.5
1,667,569	-		EFB2_01591	0.83	+0.2
1,667,569	-		EFB2_01591	0.83	+1.1
1,667,569	-		EFB2_01591	0.83	-1.2
1,667,569	-		EFB2_01591	0.83	-2.1
1,667,642	+		EFB2_01591	0.88	-2.3
1,667,642	+		EFB2_01591	0.88	+1.1
1,667,643	-		EFB2_01591	0.88	-0.2
1,667,699	+				-0.3
1,667,699	+				+0.0
1,667,699	+				-0.3
1,667,699	+				+0.8
1,667,700	-				+0.7
1,667,700	-				-2.0
1,667,700	-				+1.0
1,667,700	-				-0.2
1,667,739	+				+0.1
1,667,739	+				-1.7
1,667,740	-				+0.5
1,667,740	-				-1.7
1,667,835	+				+1.4
1,667,835	+				-0.5
1,667,835	+				+0.8
1,667,835	+				-0.1
1,667,835	+				-0.2
1,667,836	-				+0.6
1,667,836	-				-0.5
1,667,844	+				-0.8
1,667,844	+				-2.3
1,667,844	+				+0.2
1,667,844	+				+1.4
1,667,844	+				-1.7
1,667,844	+				+0.1
1,667,844	+				-3.1
1,667,844	+				-2.9
1,667,844	+				-1.2
1,667,844	+				-2.9
1,667,844	+				+1.0
1,667,844	+				-1.8
1,667,845	-				+0.2
1,667,845	-				-1.6
1,667,845	-				-0.5
1,667,845	-				-0.7
1,667,845	-				+0.2
1,667,845	-				-3.3
1,667,845	-				-0.5
1,667,845	-				-0.4
1,667,845	-				-0.1
1,667,845	-				+2.0
1,667,962	+		EFB2_01592	0.15	-0.1
1,667,974	+		EFB2_01592	0.17	-0.4
1,667,974	+		EFB2_01592	0.17	+0.8
1,667,974	+		EFB2_01592	0.17	+1.2
1,667,974	+		EFB2_01592	0.17	+0.1
1,667,974	+		EFB2_01592	0.17	+1.1
1,667,974	+		EFB2_01592	0.17	+0.0
1,667,974	+		EFB2_01592	0.17	+0.1
1,667,974	+		EFB2_01592	0.17	+1.7
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1,668,540	+				-0.8
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