Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02587

Experiment: MRS 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02585 and BACOVA_02586 are separated by 28 nucleotidesBACOVA_02586 and BACOVA_02587 are separated by 27 nucleotidesBACOVA_02587 and BACOVA_02588 are separated by 81 nucleotides BACOVA_02585: BACOVA_02585 - efflux ABC transporter, permease protein, at 352,256 to 354,652 _02585 BACOVA_02586: BACOVA_02586 - putative bacteriocin export ABC transporter, lactococcin 972 group, at 354,681 to 355,355 _02586 BACOVA_02587: BACOVA_02587 - efflux ABC transporter, permease protein, at 355,383 to 357,704 _02587 BACOVA_02588: BACOVA_02588 - putative 8-amino-7-oxononanoate synthase, at 357,786 to 358,970 _02588 Position (kb) 355 356 357 358Strain fitness (log2 ratio) -2 -1 0 1 2at 354.402 kb on + strand, within BACOVA_02585at 354.513 kb on - strandat 354.513 kb on - strandat 354.574 kb on - strandat 354.574 kb on - strandat 354.592 kb on + strandat 354.599 kb on - strandat 354.637 kb on - strandat 354.674 kb on + strandat 354.680 kb on + strandat 354.687 kb on - strandat 354.687 kb on - strandat 354.912 kb on - strand, within BACOVA_02586at 355.008 kb on + strand, within BACOVA_02586at 355.011 kb on - strand, within BACOVA_02586at 355.017 kb on - strand, within BACOVA_02586at 355.055 kb on + strand, within BACOVA_02586at 355.055 kb on + strand, within BACOVA_02586at 355.346 kb on + strandat 355.349 kb on + strandat 355.365 kb on - strandat 355.379 kb on + strandat 355.423 kb on + strandat 355.423 kb on + strandat 355.424 kb on - strandat 355.428 kb on + strandat 355.448 kb on + strandat 355.449 kb on - strandat 355.449 kb on - strandat 355.449 kb on - strandat 355.451 kb on + strandat 355.452 kb on - strandat 355.495 kb on + strandat 355.522 kb on - strandat 355.555 kb on - strandat 355.601 kb on + strandat 355.627 kb on - strand, within BACOVA_02587at 355.660 kb on + strand, within BACOVA_02587at 355.739 kb on - strand, within BACOVA_02587at 355.739 kb on - strand, within BACOVA_02587at 355.774 kb on + strand, within BACOVA_02587at 355.821 kb on - strand, within BACOVA_02587at 355.871 kb on + strand, within BACOVA_02587at 355.895 kb on + strand, within BACOVA_02587at 355.924 kb on + strand, within BACOVA_02587at 355.925 kb on - strand, within BACOVA_02587at 355.961 kb on + strand, within BACOVA_02587at 355.961 kb on + strand, within BACOVA_02587at 355.963 kb on + strand, within BACOVA_02587at 355.963 kb on + strand, within BACOVA_02587at 355.964 kb on - strand, within BACOVA_02587at 355.964 kb on - strand, within BACOVA_02587at 355.983 kb on - strand, within BACOVA_02587at 355.983 kb on - strand, within BACOVA_02587at 356.027 kb on + strand, within BACOVA_02587at 356.045 kb on + strand, within BACOVA_02587at 356.046 kb on - strand, within BACOVA_02587at 356.048 kb on - strand, within BACOVA_02587at 356.048 kb on - strand, within BACOVA_02587at 356.048 kb on - strand, within BACOVA_02587at 356.099 kb on + strand, within BACOVA_02587at 356.100 kb on - strand, within BACOVA_02587at 356.187 kb on - strand, within BACOVA_02587at 356.205 kb on - strand, within BACOVA_02587at 356.205 kb on - strand, within BACOVA_02587at 356.205 kb on - strand, within BACOVA_02587at 356.233 kb on + strand, within BACOVA_02587at 356.246 kb on - strand, within BACOVA_02587at 356.343 kb on - strand, within BACOVA_02587at 356.359 kb on + strand, within BACOVA_02587at 356.389 kb on + strand, within BACOVA_02587at 356.395 kb on + strand, within BACOVA_02587at 356.396 kb on - strand, within BACOVA_02587at 356.468 kb on - strand, within BACOVA_02587at 356.477 kb on + strand, within BACOVA_02587at 356.478 kb on - strand, within BACOVA_02587at 356.479 kb on + strand, within BACOVA_02587at 356.480 kb on - strand, within BACOVA_02587at 356.480 kb on - strand, within BACOVA_02587at 356.482 kb on + strand, within BACOVA_02587at 356.483 kb on - strand, within BACOVA_02587at 356.522 kb on + strand, within BACOVA_02587at 356.524 kb on + strand, within BACOVA_02587at 356.524 kb on + strand, within BACOVA_02587at 356.529 kb on + strand, within BACOVA_02587at 356.529 kb on + strand, within BACOVA_02587at 356.534 kb on + strand, within BACOVA_02587at 356.534 kb on + strand, within BACOVA_02587at 356.535 kb on - strand, within BACOVA_02587at 356.601 kb on - strand, within BACOVA_02587at 356.633 kb on + strand, within BACOVA_02587at 356.634 kb on - strand, within BACOVA_02587at 356.635 kb on + strand, within BACOVA_02587at 356.675 kb on + strand, within BACOVA_02587at 356.676 kb on - strand, within BACOVA_02587at 356.717 kb on + strand, within BACOVA_02587at 356.736 kb on + strand, within BACOVA_02587at 356.736 kb on + strand, within BACOVA_02587at 356.768 kb on - strand, within BACOVA_02587at 356.820 kb on - strand, within BACOVA_02587at 356.890 kb on - strand, within BACOVA_02587at 356.892 kb on - strand, within BACOVA_02587at 356.926 kb on - strand, within BACOVA_02587at 356.991 kb on - strand, within BACOVA_02587at 357.001 kb on + strand, within BACOVA_02587at 357.002 kb on - strand, within BACOVA_02587at 357.002 kb on - strand, within BACOVA_02587at 357.064 kb on + strand, within BACOVA_02587at 357.075 kb on + strand, within BACOVA_02587at 357.076 kb on - strand, within BACOVA_02587at 357.078 kb on - strand, within BACOVA_02587at 357.080 kb on - strand, within BACOVA_02587at 357.108 kb on + strand, within BACOVA_02587at 357.141 kb on - strand, within BACOVA_02587at 357.177 kb on - strand, within BACOVA_02587at 357.177 kb on - strand, within BACOVA_02587at 357.179 kb on + strand, within BACOVA_02587at 357.180 kb on - strand, within BACOVA_02587at 357.180 kb on - strand, within BACOVA_02587at 357.243 kb on - strand, within BACOVA_02587at 357.300 kb on + strand, within BACOVA_02587at 357.300 kb on + strand, within BACOVA_02587at 357.301 kb on - strand, within BACOVA_02587at 357.303 kb on - strand, within BACOVA_02587at 357.341 kb on - strand, within BACOVA_02587at 357.352 kb on + strand, within BACOVA_02587at 357.353 kb on - strand, within BACOVA_02587at 357.356 kb on + strand, within BACOVA_02587at 357.356 kb on + strand, within BACOVA_02587at 357.359 kb on - strand, within BACOVA_02587at 357.428 kb on + strand, within BACOVA_02587at 357.430 kb on + strand, within BACOVA_02587at 357.430 kb on + strand, within BACOVA_02587at 357.431 kb on - strand, within BACOVA_02587at 357.454 kb on + strand, within BACOVA_02587at 357.454 kb on + strand, within BACOVA_02587at 357.460 kb on + strand, within BACOVA_02587at 357.473 kb on - strandat 357.497 kb on - strandat 357.535 kb on - strandat 357.535 kb on - strandat 357.566 kb on + strandat 357.583 kb on + strandat 357.607 kb on + strandat 357.607 kb on + strandat 357.607 kb on + strandat 357.608 kb on - strandat 357.614 kb on - strandat 357.707 kb on + strandat 357.752 kb on - strandat 357.774 kb on - strandat 357.774 kb on - strandat 357.788 kb on - strandat 357.807 kb on - strandat 357.807 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MRS 1 x (C) complex media
remove
354,402 + BACOVA_02585 0.90 +1.2
354,513 - -1.5
354,513 - -0.3
354,574 - -0.3
354,574 - -0.2
354,592 + -1.4
354,599 - +1.0
354,637 - -0.8
354,674 + -0.2
354,680 + +0.2
354,687 - -0.5
354,687 - +0.5
354,912 - BACOVA_02586 0.34 +0.2
355,008 + BACOVA_02586 0.48 +0.6
355,011 - BACOVA_02586 0.49 +2.5
355,017 - BACOVA_02586 0.50 -0.5
355,055 + BACOVA_02586 0.55 +1.3
355,055 + BACOVA_02586 0.55 +1.3
355,346 + -1.2
355,349 + -0.4
355,365 - +0.9
355,379 + +0.6
355,423 + +1.1
355,423 + +0.7
355,424 - -0.2
355,428 + -0.4
355,448 + +0.4
355,449 - +1.3
355,449 - -0.2
355,449 - -0.4
355,451 + -0.7
355,452 - -2.0
355,495 + +0.6
355,522 - -1.0
355,555 - +0.6
355,601 + +0.3
355,627 - BACOVA_02587 0.11 +0.7
355,660 + BACOVA_02587 0.12 -0.4
355,739 - BACOVA_02587 0.15 -2.0
355,739 - BACOVA_02587 0.15 +0.1
355,774 + BACOVA_02587 0.17 -0.7
355,821 - BACOVA_02587 0.19 -0.7
355,871 + BACOVA_02587 0.21 +1.8
355,895 + BACOVA_02587 0.22 -0.1
355,924 + BACOVA_02587 0.23 +0.5
355,925 - BACOVA_02587 0.23 +0.5
355,961 + BACOVA_02587 0.25 -0.8
355,961 + BACOVA_02587 0.25 +1.0
355,963 + BACOVA_02587 0.25 +0.3
355,963 + BACOVA_02587 0.25 +0.1
355,964 - BACOVA_02587 0.25 -1.7
355,964 - BACOVA_02587 0.25 -0.9
355,983 - BACOVA_02587 0.26 -0.3
355,983 - BACOVA_02587 0.26 +0.6
356,027 + BACOVA_02587 0.28 +0.6
356,045 + BACOVA_02587 0.29 +0.2
356,046 - BACOVA_02587 0.29 -0.5
356,048 - BACOVA_02587 0.29 -0.4
356,048 - BACOVA_02587 0.29 +0.4
356,048 - BACOVA_02587 0.29 -0.0
356,099 + BACOVA_02587 0.31 +0.6
356,100 - BACOVA_02587 0.31 +0.8
356,187 - BACOVA_02587 0.35 +0.4
356,205 - BACOVA_02587 0.35 -0.3
356,205 - BACOVA_02587 0.35 -0.6
356,205 - BACOVA_02587 0.35 +0.0
356,233 + BACOVA_02587 0.37 +1.2
356,246 - BACOVA_02587 0.37 +0.7
356,343 - BACOVA_02587 0.41 +0.3
356,359 + BACOVA_02587 0.42 -1.0
356,389 + BACOVA_02587 0.43 +0.9
356,395 + BACOVA_02587 0.44 -1.4
356,396 - BACOVA_02587 0.44 -1.2
356,468 - BACOVA_02587 0.47 +0.8
356,477 + BACOVA_02587 0.47 +0.1
356,478 - BACOVA_02587 0.47 -0.5
356,479 + BACOVA_02587 0.47 +0.4
356,480 - BACOVA_02587 0.47 +0.5
356,480 - BACOVA_02587 0.47 +0.2
356,482 + BACOVA_02587 0.47 +0.4
356,483 - BACOVA_02587 0.47 +0.5
356,522 + BACOVA_02587 0.49 +0.2
356,524 + BACOVA_02587 0.49 -1.4
356,524 + BACOVA_02587 0.49 -1.7
356,529 + BACOVA_02587 0.49 -1.9
356,529 + BACOVA_02587 0.49 +0.4
356,534 + BACOVA_02587 0.50 -0.4
356,534 + BACOVA_02587 0.50 -0.8
356,535 - BACOVA_02587 0.50 +0.2
356,601 - BACOVA_02587 0.52 +0.2
356,633 + BACOVA_02587 0.54 -0.0
356,634 - BACOVA_02587 0.54 -0.5
356,635 + BACOVA_02587 0.54 -0.3
356,675 + BACOVA_02587 0.56 +1.0
356,676 - BACOVA_02587 0.56 +0.1
356,717 + BACOVA_02587 0.57 +1.5
356,736 + BACOVA_02587 0.58 -0.2
356,736 + BACOVA_02587 0.58 +0.0
356,768 - BACOVA_02587 0.60 -1.0
356,820 - BACOVA_02587 0.62 +0.0
356,890 - BACOVA_02587 0.65 +2.1
356,892 - BACOVA_02587 0.65 +1.3
356,926 - BACOVA_02587 0.66 +0.4
356,991 - BACOVA_02587 0.69 +1.0
357,001 + BACOVA_02587 0.70 -1.0
357,002 - BACOVA_02587 0.70 +0.3
357,002 - BACOVA_02587 0.70 +1.1
357,064 + BACOVA_02587 0.72 -0.1
357,075 + BACOVA_02587 0.73 +0.5
357,076 - BACOVA_02587 0.73 +0.3
357,078 - BACOVA_02587 0.73 +1.0
357,080 - BACOVA_02587 0.73 -0.0
357,108 + BACOVA_02587 0.74 -0.3
357,141 - BACOVA_02587 0.76 +0.7
357,177 - BACOVA_02587 0.77 +0.8
357,177 - BACOVA_02587 0.77 +1.1
357,179 + BACOVA_02587 0.77 -1.7
357,180 - BACOVA_02587 0.77 +0.1
357,180 - BACOVA_02587 0.77 -0.7
357,243 - BACOVA_02587 0.80 -0.4
357,300 + BACOVA_02587 0.83 +0.9
357,300 + BACOVA_02587 0.83 +0.2
357,301 - BACOVA_02587 0.83 -0.0
357,303 - BACOVA_02587 0.83 -1.6
357,341 - BACOVA_02587 0.84 +0.3
357,352 + BACOVA_02587 0.85 -0.6
357,353 - BACOVA_02587 0.85 -0.4
357,356 + BACOVA_02587 0.85 +0.8
357,356 + BACOVA_02587 0.85 +0.7
357,359 - BACOVA_02587 0.85 +1.1
357,428 + BACOVA_02587 0.88 +0.1
357,430 + BACOVA_02587 0.88 +0.5
357,430 + BACOVA_02587 0.88 -0.7
357,431 - BACOVA_02587 0.88 +0.5
357,454 + BACOVA_02587 0.89 +0.6
357,454 + BACOVA_02587 0.89 -0.9
357,460 + BACOVA_02587 0.89 +0.8
357,473 - +0.5
357,497 - -0.3
357,535 - +0.1
357,535 - -1.4
357,566 + -0.2
357,583 + -0.4
357,607 + +0.4
357,607 + +0.1
357,607 + -0.4
357,608 - -2.0
357,614 - -0.5
357,707 + +0.7
357,752 - +1.0
357,774 - +1.0
357,774 - -1.2
357,788 - +0.0
357,807 - +1.5
357,807 - -0.2

Or see this region's nucleotide sequence